Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47168 * 55.00056 * 3 2 1 5 5 O 1.42900 * 109.47045 * 294.99610 * 3 2 1 6 6 C 1.53003 * 109.46699 * 174.99844 * 3 2 1 7 7 C 1.53005 * 109.46853 * 184.99615 * 6 3 2 8 8 N 1.46496 * 109.46923 * 179.97438 * 7 6 3 9 9 C 1.34775 * 119.99930 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.47644 * 120.00436 * 180.02562 * 9 8 7 12 12 C 1.40011 * 119.89186 * 359.73173 * 11 9 8 13 13 C 1.36311 * 120.10837 * 179.71645 * 12 11 9 14 14 C 1.40888 * 119.89111 * 0.57416 * 13 12 11 15 15 C 1.41107 * 120.10772 * 179.67426 * 14 13 12 16 16 H 1.08001 * 120.00361 * 155.08176 * 15 14 13 17 17 C 1.40223 * 119.99920 * 335.08838 * 15 14 13 18 18 N 1.30648 * 120.00112 * 342.20183 * 17 15 14 19 19 Si 1.86799 * 119.99859 * 162.20408 * 17 15 14 20 20 H 1.48498 * 109.47259 * 94.66036 * 19 17 15 21 21 H 1.48510 * 109.46901 * 214.65535 * 19 17 15 22 22 H 1.48491 * 109.47615 * 334.65499 * 19 17 15 23 23 C 1.40895 * 119.78951 * 359.69846 * 14 13 12 24 24 C 1.36312 * 119.89282 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47576 * 299.99867 * 1 2 3 26 26 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47675 * 60.00216 * 1 2 3 28 28 H 1.09001 * 109.47016 * 120.00117 * 2 1 3 29 29 H 1.08999 * 109.46870 * 239.99889 * 2 1 3 30 30 H 0.96694 * 114.00495 * 300.00353 * 5 3 2 31 31 H 1.08992 * 109.47193 * 305.00072 * 6 3 2 32 32 H 1.09000 * 109.47181 * 65.00463 * 6 3 2 33 33 H 1.09000 * 109.47343 * 300.00433 * 7 6 3 34 34 H 1.09000 * 109.46535 * 60.00453 * 7 6 3 35 35 H 0.96998 * 120.00527 * 0.02562 * 8 7 6 36 36 H 1.08010 * 119.94810 * 359.97438 * 12 11 9 37 37 H 1.07999 * 120.05900 * 180.25231 * 13 12 11 38 38 H 0.96996 * 120.00451 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.04838 * 179.97438 * 23 14 13 40 40 H 1.08005 * 119.94579 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8851 0.2511 8 7 5.5243 2.8868 0.3721 9 6 6.1889 4.0527 0.4956 10 8 5.5767 5.1032 0.5070 11 6 7.6604 4.0546 0.6170 12 6 8.3627 2.8434 0.6093 13 6 9.7217 2.8403 0.7153 14 6 10.4186 4.0579 0.8450 15 6 11.8248 4.0596 0.9620 16 1 12.3904 4.9301 0.6642 17 6 12.4879 2.9309 1.4647 18 7 11.8244 2.0301 2.1393 19 14 14.3198 2.7155 1.1699 20 1 15.0743 3.2471 2.3333 21 1 14.6272 1.2728 0.9980 22 1 14.7144 3.4551 -0.0558 23 6 9.7069 5.2738 0.8580 24 6 8.3485 5.2672 0.7447 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.0140 1.6542 -2.0139 31 1 3.8569 0.8801 1.0113 32 1 4.0029 0.9836 -0.7596 33 1 3.7721 3.4493 -0.6345 34 1 3.6263 3.3457 1.1365 35 1 6.0128 2.0488 0.3634 36 1 7.8272 1.9102 0.5150 37 1 10.2629 1.9058 0.7051 38 1 12.2831 1.2495 2.4874 39 1 10.2369 6.2096 0.9577 40 1 7.8021 6.1988 0.7550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270384768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -117.512487 kcal Electronic energy + Delta-G solvation = -20404.083039 eV Core-core repulsion = 17181.368973 eV Total energy + Delta-G solvation = -3222.714065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80766 -39.25909 -38.75996 -35.94141 -35.67125 -33.74860 -32.51663 -31.35552 -31.16359 -27.98122 -26.41149 -23.81899 -23.00896 -22.53486 -22.33516 -21.19978 -19.37015 -18.47121 -17.41763 -17.25490 -16.87507 -16.83482 -16.05994 -15.75365 -15.63935 -15.21489 -14.94433 -14.69910 -14.43467 -13.98620 -13.88751 -13.68823 -13.44747 -13.21525 -12.89680 -12.83764 -12.66840 -12.49160 -12.37218 -12.20492 -11.80944 -11.79197 -11.64662 -11.37728 -11.12610 -10.98351 -10.59701 -10.07073 -9.57896 -9.40610 -8.79773 -6.48433 0.43622 1.14476 1.38928 1.42643 1.55291 2.11573 2.18378 2.37823 2.78337 3.49538 3.68615 3.76223 3.94033 4.09226 4.23375 4.27837 4.31851 4.38501 4.43946 4.57715 4.66389 4.76984 4.91696 4.94721 5.02712 5.04607 5.11037 5.13719 5.15819 5.29803 5.36040 5.42818 5.56009 5.59962 5.81923 5.94102 5.99058 6.22390 6.53454 6.71634 6.76806 6.88670 6.89303 7.44200 8.15736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.002967 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.910156 B = 9435.448795 C =10174.029503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.090 0.910 5 O -0.578 6.578 6 C -0.151 4.151 7 C 0.126 3.874 8 N -0.725 5.725 9 C 0.568 3.432 10 O -0.610 6.610 11 C -0.295 4.295 12 C -0.052 4.052 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.797 5.797 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.035 4.035 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.409 0.591 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 -10.408 -3.451 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.052 3.948 4 H 0.108 0.892 5 O -0.386 6.386 6 C -0.189 4.189 7 C 0.002 3.998 8 N -0.377 5.377 9 C 0.361 3.639 10 O -0.495 6.495 11 C -0.299 4.299 12 C -0.071 4.071 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.421 5.421 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.181 1.181 23 C -0.273 4.273 24 C -0.054 4.054 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.246 0.754 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.076 -9.537 -2.892 15.657 hybrid contribution 1.242 -0.449 -0.173 1.332 sum -10.834 -9.986 -3.064 15.049 Atomic orbital electron populations 1.21710 0.95331 1.01842 1.01872 1.22182 0.96872 0.95794 1.03844 1.21888 0.91687 0.93781 0.87458 0.89160 1.86579 1.77220 1.58217 1.16561 1.22481 0.97261 0.94349 1.04845 1.21248 0.79036 0.98649 1.00831 1.45779 1.07902 1.08513 1.75480 1.18476 0.87733 0.83293 0.74388 1.90616 1.70738 1.33244 1.54862 1.19189 0.91293 0.94695 1.24732 1.20726 0.94220 0.95763 0.96382 1.21021 0.93655 0.98308 1.08733 1.18152 0.94093 0.91915 0.86083 1.20108 0.92277 1.01269 1.36345 0.89709 1.26925 1.06205 0.93663 0.91312 1.69755 1.41155 1.09221 1.21947 0.85104 0.75120 0.79091 0.79984 1.18645 1.18460 1.18150 1.20860 0.93573 0.97667 1.15202 1.20517 0.93944 0.96458 0.94466 0.93145 0.91911 0.92865 0.90091 0.90422 0.76390 0.88973 0.89302 0.92852 0.93446 0.75416 0.85603 0.86669 0.89126 0.87830 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.17 16 2 C -0.15 -1.73 5.61 30.59 0.17 -1.56 16 3 C 0.11 1.76 2.97 30.60 0.09 1.85 16 4 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 5 O -0.58 -10.64 12.41 -148.98 -1.85 -12.49 16 6 C -0.15 -2.54 5.01 30.60 0.15 -2.38 16 7 C 0.13 3.42 5.57 86.38 0.48 3.90 16 8 N -0.72 -23.27 5.50 -466.16 -2.57 -25.84 16 9 C 0.57 24.50 7.76 86.73 0.67 25.17 16 10 O -0.61 -30.32 16.32 -3.99 -0.07 -30.39 16 11 C -0.29 -13.60 5.89 -19.93 -0.12 -13.72 16 12 C -0.05 -2.26 9.47 22.25 0.21 -2.05 16 13 C -0.20 -9.70 8.63 22.47 0.19 -9.50 16 14 C 0.10 5.24 5.57 -21.28 -0.12 5.13 16 15 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 16 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 17 C 0.04 1.75 5.13 85.35 0.44 2.19 16 18 N -0.80 -37.64 10.97 21.87 0.24 -37.40 16 19 Si 0.99 34.39 29.60 68.60 2.03 36.42 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 21 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 23 C -0.25 -12.73 9.73 22.47 0.22 -12.51 16 24 C -0.03 -1.70 9.52 22.25 0.21 -1.48 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.75 7.82 -2.38 -0.02 0.73 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.39 4.41 9.05 -74.06 -0.67 3.74 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 10.95 6.47 -92.71 -0.60 10.35 16 36 H 0.13 4.36 6.37 -2.91 -0.02 4.34 16 37 H 0.12 5.68 6.17 -2.91 -0.02 5.66 16 38 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 39 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -64.59 336.59 1.10 -63.49 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.22 Total: 35.97 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 3.53 Total: -29.76 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -2.33 Total: -63.24 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.91 Total: -42.88 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -64.59 1.10 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270384768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.026 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds