Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47016 * 2 1 4 4 C 1.52999 * 109.47201 * 119.99826 * 2 1 3 5 5 H 1.09001 * 109.46889 * 300.00008 * 4 2 1 6 6 O 1.42904 * 109.47089 * 180.02562 * 4 2 1 7 7 C 1.52993 * 109.47371 * 60.00265 * 4 2 1 8 8 N 1.46498 * 109.47424 * 185.00301 * 7 4 2 9 9 C 1.34775 * 119.99836 * 180.02562 * 8 7 4 10 10 O 1.21586 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.47643 * 119.99749 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.89589 * 359.72373 * 11 9 8 13 13 C 1.36320 * 120.10847 * 179.76060 * 12 11 9 14 14 C 1.40892 * 119.88730 * 0.50807 * 13 12 11 15 15 C 1.41104 * 120.10126 * 179.71860 * 14 13 12 16 16 H 1.08002 * 120.00066 * 204.65564 * 15 14 13 17 17 C 1.40226 * 120.00296 * 24.65571 * 15 14 13 18 18 N 1.30655 * 119.99884 * 17.86301 * 17 15 14 19 19 Si 1.86797 * 120.00404 * 197.86681 * 17 15 14 20 20 H 1.48499 * 109.47483 * 59.99382 * 19 17 15 21 21 H 1.48503 * 109.47480 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46763 * 299.99712 * 19 17 15 23 23 C 1.40883 * 119.79711 * 359.74606 * 14 13 12 24 24 C 1.36324 * 119.89071 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47101 * 299.99816 * 1 2 3 27 27 H 1.08993 * 109.47329 * 60.00150 * 1 2 3 28 28 H 1.08995 * 109.47771 * 240.00295 * 2 1 3 29 29 H 1.08997 * 109.47380 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47201 * 300.00192 * 3 2 1 31 31 H 1.09001 * 109.47427 * 59.99776 * 3 2 1 32 32 H 0.96698 * 113.99413 * 299.99515 * 6 4 2 33 33 H 1.09003 * 109.46740 * 305.00294 * 7 4 2 34 34 H 1.09004 * 109.47112 * 64.99990 * 7 4 2 35 35 H 0.96999 * 119.99827 * 359.97438 * 8 7 4 36 36 H 1.07999 * 119.94779 * 0.02562 * 12 11 9 37 37 H 1.07996 * 120.06013 * 180.23119 * 13 12 11 38 38 H 0.96990 * 120.00024 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05871 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.94760 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 8 3.4691 -0.7207 1.2495 7 6 1.5301 -2.1637 1.2493 8 7 1.9177 -2.8186 2.5011 9 6 1.5746 -4.1027 2.7241 10 8 0.9431 -4.7175 1.8865 11 6 1.9656 -4.7629 3.9855 12 6 2.6978 -4.0547 4.9460 13 6 3.0569 -4.6585 6.1142 14 6 2.6993 -6.0008 6.3497 15 6 3.0738 -6.6320 7.5548 16 1 3.1702 -7.7070 7.5940 17 6 3.3209 -5.8637 8.7015 18 7 2.8812 -4.6353 8.7719 19 14 4.2785 -6.5961 10.1282 20 1 5.6320 -6.9933 9.6640 21 1 4.4022 -5.5876 11.2112 22 1 3.5621 -7.7903 10.6441 23 6 1.9671 -6.7110 5.3779 24 6 1.6076 -6.0969 4.2151 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8626 -1.1622 0.4845 33 1 0.4438 -2.1650 1.1597 34 1 1.9648 -2.7027 0.4075 35 1 2.4218 -2.3282 3.1692 36 1 2.9749 -3.0270 4.7630 37 1 3.6185 -4.1103 6.8562 38 1 3.0524 -4.1037 9.5649 39 1 1.6911 -7.7402 5.5538 40 1 1.0467 -6.6406 3.4694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270422007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -94.445984 kcal Electronic energy + Delta-G solvation = -20836.867992 eV Core-core repulsion = 17615.154165 eV Total energy + Delta-G solvation = -3221.713827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40615 -38.27740 -36.98642 -34.37937 -33.86024 -33.79863 -30.40228 -29.43153 -28.45879 -27.09512 -25.77223 -23.32458 -21.69456 -20.88846 -20.79390 -19.44716 -17.52321 -17.19424 -16.60840 -15.87039 -15.51411 -15.05256 -14.60566 -14.51256 -13.97836 -13.83905 -13.57220 -13.18563 -12.99354 -12.66953 -12.43271 -12.31201 -12.08268 -12.05195 -11.88939 -11.54592 -11.32597 -11.25349 -11.16386 -10.98119 -10.73516 -10.63277 -10.06563 -10.03430 -9.54232 -9.33163 -8.94977 -8.57628 -7.70349 -7.52857 -7.02352 -4.59137 2.25194 2.93226 2.95077 2.99310 3.05333 3.70865 3.74694 3.88302 4.25981 4.50686 4.58408 4.65630 4.77463 5.09720 5.18012 5.38038 5.42049 5.58385 5.59911 5.63890 5.73673 5.79353 5.89386 6.06986 6.07840 6.12982 6.15941 6.33262 6.78358 6.83893 6.94374 7.07262 7.15126 7.44969 7.49156 7.67076 7.81172 7.87319 8.08451 8.26966 8.41216 8.64267 8.76833 9.09252 9.89685 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.003386 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.170017 B = 8266.469195 C = 8926.717784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.099 3.901 5 H 0.104 0.896 6 O -0.556 6.556 7 C 0.090 3.910 8 N -0.737 5.737 9 C 0.571 3.429 10 O -0.579 6.579 11 C -0.285 4.285 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.443 4.443 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.022 4.022 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.375 0.625 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 9.794 -9.499 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.199 4.199 4 C 0.039 3.961 5 H 0.122 0.878 6 O -0.361 6.361 7 C -0.035 4.035 8 N -0.390 5.390 9 C 0.366 3.634 10 O -0.462 6.462 11 C -0.289 4.289 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.126 3.874 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.250 9.913 -9.369 13.642 hybrid contribution 0.580 -0.238 0.483 0.791 sum 0.330 9.675 -8.886 13.141 Atomic orbital electron populations 1.21912 0.94397 1.02567 1.02151 1.21743 0.96820 0.97398 0.98341 1.21751 1.01664 0.94960 1.01566 1.22259 0.81058 0.94026 0.98727 0.87829 1.86599 1.18770 1.80928 1.49785 1.21981 1.00752 0.92498 0.88225 1.45813 1.59731 1.13541 1.19956 1.18608 0.77582 0.80243 0.87004 1.90623 1.42648 1.64930 1.47962 1.18898 1.16998 0.96589 0.96447 1.20493 0.96752 0.96861 0.93987 1.20979 1.05390 0.96704 0.96690 1.17780 0.86258 0.91793 0.91598 1.19818 1.38271 0.95350 0.93663 0.89753 1.26101 0.93552 0.94489 1.00547 1.69738 1.31846 1.08889 1.29004 0.86258 0.80899 0.79823 0.79264 1.18473 1.20054 1.18678 1.20715 1.07993 1.00158 0.97064 1.20357 0.95353 0.92863 0.95549 0.91810 0.92307 0.92373 0.90755 0.91970 0.92830 0.92640 0.77802 0.90908 0.92009 0.76341 0.89249 0.86190 0.90176 0.88398 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.85 37.16 0.33 -0.95 16 2 C -0.12 -1.05 2.69 -90.62 -0.24 -1.30 16 3 C -0.14 -1.14 9.05 37.16 0.34 -0.80 16 4 C 0.10 1.05 2.58 -26.73 -0.07 0.98 16 5 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 6 O -0.56 -6.15 12.61 -35.23 -0.44 -6.59 16 7 C 0.09 1.22 5.10 -4.05 -0.02 1.20 16 8 N -0.74 -12.57 5.45 -61.32 -0.33 -12.91 16 9 C 0.57 12.36 7.76 -12.42 -0.10 12.27 16 10 O -0.58 -13.95 16.32 5.29 0.09 -13.87 16 11 C -0.28 -6.64 5.89 -104.73 -0.62 -7.25 16 12 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 14 C 0.13 3.32 5.58 -106.81 -0.60 2.72 16 15 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 18 N -0.77 -18.60 10.95 55.56 0.61 -18.00 16 19 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 24 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 25 H 0.06 0.58 6.32 -51.93 -0.33 0.26 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.37 3.06 9.05 45.56 0.41 3.47 16 33 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 6.43 6.47 -40.82 -0.26 6.17 16 36 H 0.09 1.75 6.37 -52.49 -0.33 1.42 16 37 H 0.12 3.01 6.15 -52.49 -0.32 2.69 16 38 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -29.11 332.39 -7.88 -36.99 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.89 Total: 13.67 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.88 Total: -16.63 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.27 Total: -30.90 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.36 Total: -20.46 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.11 -7.88 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270422007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.456 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds