Wall clock time and date at job start Mon Mar 30 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47016 * 2 1 4 4 C 1.52999 * 109.47201 * 119.99826 * 2 1 3 5 5 H 1.09001 * 109.46889 * 300.00008 * 4 2 1 6 6 O 1.42904 * 109.47089 * 180.02562 * 4 2 1 7 7 C 1.52993 * 109.47371 * 60.00265 * 4 2 1 8 8 N 1.46498 * 109.47424 * 185.00301 * 7 4 2 9 9 C 1.34775 * 119.99836 * 180.02562 * 8 7 4 10 10 O 1.21586 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.47643 * 119.99749 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.89589 * 359.72373 * 11 9 8 13 13 C 1.36320 * 120.10847 * 179.76060 * 12 11 9 14 14 C 1.40892 * 119.88730 * 0.50807 * 13 12 11 15 15 C 1.41104 * 120.10126 * 179.71860 * 14 13 12 16 16 H 1.08002 * 120.00066 * 204.65564 * 15 14 13 17 17 C 1.40226 * 120.00296 * 24.65571 * 15 14 13 18 18 N 1.30655 * 119.99884 * 17.86301 * 17 15 14 19 19 Si 1.86797 * 120.00404 * 197.86681 * 17 15 14 20 20 H 1.48499 * 109.47483 * 59.99382 * 19 17 15 21 21 H 1.48503 * 109.47480 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46763 * 299.99712 * 19 17 15 23 23 C 1.40883 * 119.79711 * 359.74606 * 14 13 12 24 24 C 1.36324 * 119.89071 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47101 * 299.99816 * 1 2 3 27 27 H 1.08993 * 109.47329 * 60.00150 * 1 2 3 28 28 H 1.08995 * 109.47771 * 240.00295 * 2 1 3 29 29 H 1.08997 * 109.47380 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47201 * 300.00192 * 3 2 1 31 31 H 1.09001 * 109.47427 * 59.99776 * 3 2 1 32 32 H 0.96698 * 113.99413 * 299.99515 * 6 4 2 33 33 H 1.09003 * 109.46740 * 305.00294 * 7 4 2 34 34 H 1.09004 * 109.47112 * 64.99990 * 7 4 2 35 35 H 0.96999 * 119.99827 * 359.97438 * 8 7 4 36 36 H 1.07999 * 119.94779 * 0.02562 * 12 11 9 37 37 H 1.07996 * 120.06013 * 180.23119 * 13 12 11 38 38 H 0.96990 * 120.00024 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05871 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.94760 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 8 3.4691 -0.7207 1.2495 7 6 1.5301 -2.1637 1.2493 8 7 1.9177 -2.8186 2.5011 9 6 1.5746 -4.1027 2.7241 10 8 0.9431 -4.7175 1.8865 11 6 1.9656 -4.7629 3.9855 12 6 2.6978 -4.0547 4.9460 13 6 3.0569 -4.6585 6.1142 14 6 2.6993 -6.0008 6.3497 15 6 3.0738 -6.6320 7.5548 16 1 3.1702 -7.7070 7.5940 17 6 3.3209 -5.8637 8.7015 18 7 2.8812 -4.6353 8.7719 19 14 4.2785 -6.5961 10.1282 20 1 5.6320 -6.9933 9.6640 21 1 4.4022 -5.5876 11.2112 22 1 3.5621 -7.7903 10.6441 23 6 1.9671 -6.7110 5.3779 24 6 1.6076 -6.0969 4.2151 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8626 -1.1622 0.4845 33 1 0.4438 -2.1650 1.1597 34 1 1.9648 -2.7027 0.4075 35 1 2.4218 -2.3282 3.1692 36 1 2.9749 -3.0270 4.7630 37 1 3.6185 -4.1103 6.8562 38 1 3.0524 -4.1037 9.5649 39 1 1.6911 -7.7402 5.5538 40 1 1.0467 -6.6406 3.4694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270422007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:54 Heat of formation + Delta-G solvation = -113.437177 kcal Electronic energy + Delta-G solvation = -20837.691512 eV Core-core repulsion = 17615.154165 eV Total energy + Delta-G solvation = -3222.537347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89624 -39.48912 -38.69907 -35.67228 -35.26507 -35.13085 -32.16041 -31.30620 -29.65725 -27.88888 -27.39657 -24.52991 -23.31343 -22.71308 -21.75066 -20.93915 -19.37122 -18.66930 -17.62043 -17.29064 -16.98670 -16.38467 -15.85833 -15.75045 -15.46471 -15.23157 -14.95039 -14.79144 -14.42048 -13.92221 -13.72817 -13.60354 -13.39980 -13.16137 -13.09030 -12.85489 -12.83039 -12.63289 -12.37400 -12.30856 -11.82987 -11.79420 -11.51460 -11.37003 -11.12998 -11.00747 -10.60404 -10.06587 -9.58025 -9.40911 -8.79488 -6.48676 0.43839 1.14473 1.39047 1.44757 1.52573 2.11669 2.18044 2.35913 2.78343 3.43764 3.62090 3.68900 3.86214 3.99449 4.23525 4.27672 4.31292 4.39200 4.44058 4.63012 4.74550 4.82752 4.89360 4.92000 4.99630 5.02637 5.07446 5.15398 5.21495 5.29526 5.41679 5.43638 5.55594 5.59743 5.81789 5.94040 5.99031 6.22112 6.53423 6.68042 6.76595 6.78387 6.88541 7.42821 8.15647 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.003386 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.170017 B = 8266.469195 C = 8926.717784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.139 4.139 4 C 0.110 3.890 5 H 0.102 0.898 6 O -0.567 6.567 7 C 0.088 3.912 8 N -0.721 5.721 9 C 0.570 3.430 10 O -0.607 6.607 11 C -0.296 4.296 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.474 4.474 16 H 0.086 0.914 17 C 0.038 3.962 18 N -0.798 5.798 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.032 4.032 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.388 0.612 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.407 0.593 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 11.079 -9.551 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.196 4.196 4 C 0.051 3.949 5 H 0.119 0.881 6 O -0.374 6.374 7 C -0.036 4.036 8 N -0.373 5.373 9 C 0.363 3.637 10 O -0.492 6.492 11 C -0.300 4.300 12 C -0.072 4.072 13 C -0.218 4.218 14 C 0.099 3.901 15 C -0.501 4.501 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.421 5.421 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.273 4.273 24 C -0.051 4.051 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.237 0.763 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.402 11.238 -9.446 14.686 hybrid contribution 0.343 -0.580 0.419 0.793 sum 0.745 10.659 -9.027 13.987 Atomic orbital electron populations 1.21918 0.94246 1.02072 1.02838 1.21689 0.96842 0.97630 0.97442 1.21724 1.01430 0.94414 1.02066 1.22163 0.80987 0.91924 0.99866 0.88064 1.86575 1.18831 1.81130 1.50880 1.22238 1.00871 0.94125 0.86383 1.45703 1.58337 1.12040 1.21202 1.18408 0.77563 0.81549 0.86134 1.90604 1.44052 1.65991 1.48582 1.19197 1.16746 0.96613 0.97464 1.20713 0.95554 0.98078 0.92899 1.21013 1.06466 0.96771 0.97517 1.18129 0.86960 0.92614 0.92420 1.20106 1.39680 0.95843 0.94463 0.89568 1.26946 0.93761 0.94713 1.02741 1.69760 1.32067 1.09993 1.30285 0.85145 0.79085 0.79161 0.75800 1.18231 1.18769 1.18236 1.20866 1.08417 1.00694 0.97352 1.20509 0.95544 0.93586 0.95505 0.92853 0.92331 0.91066 0.89822 0.92276 0.91584 0.92928 0.76314 0.91053 0.91899 0.75595 0.86209 0.86856 0.89146 0.87690 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.85 71.98 0.64 -1.63 16 2 C -0.12 -1.72 2.69 -10.79 -0.03 -1.75 16 3 C -0.14 -1.88 9.05 71.98 0.65 -1.23 16 4 C 0.11 2.12 2.58 30.59 0.08 2.20 16 5 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 6 O -0.57 -11.31 12.61 -148.98 -1.88 -13.19 16 7 C 0.09 2.25 5.10 86.38 0.44 2.69 16 8 N -0.72 -23.66 5.45 -466.17 -2.54 -26.20 16 9 C 0.57 24.40 7.76 86.73 0.67 25.07 16 10 O -0.61 -29.17 16.32 -3.99 -0.07 -29.24 16 11 C -0.30 -13.79 5.89 -19.93 -0.12 -13.91 16 12 C -0.05 -2.41 9.47 22.25 0.21 -2.20 16 13 C -0.20 -9.97 8.64 22.47 0.19 -9.78 16 14 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 15 C -0.47 -24.10 9.04 23.46 0.21 -23.89 16 16 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.75 5.14 85.35 0.44 2.19 16 18 N -0.80 -38.39 10.95 21.87 0.24 -38.15 16 19 Si 0.99 34.90 29.60 68.60 2.03 36.93 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 23 C -0.25 -12.76 9.73 22.47 0.22 -12.55 16 24 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 25 H 0.05 0.90 6.32 -2.39 -0.02 0.89 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 0.85 7.68 -2.39 -0.02 0.83 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.39 5.46 9.05 -74.06 -0.67 4.79 16 33 H 0.07 1.91 6.17 -2.39 -0.01 1.89 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.41 12.35 6.47 -92.71 -0.60 11.75 16 36 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 37 H 0.11 5.77 6.15 -2.91 -0.02 5.75 16 38 H 0.30 12.73 8.29 -92.72 -0.77 11.96 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -62.35 332.39 1.28 -61.07 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -0.21 Total: 39.70 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.70 Total: -30.91 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -2.30 Total: -64.35 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.94 Total: -42.43 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -62.35 1.28 -61.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270422007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.371 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds