Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47631 * 2 1 4 4 C 1.53003 * 109.47340 * 120.00624 * 2 1 3 5 5 H 1.09001 * 109.47132 * 184.99996 * 4 2 1 6 6 O 1.42905 * 109.46801 * 304.99596 * 4 2 1 7 7 C 1.53002 * 109.47324 * 64.99184 * 4 2 1 8 8 N 1.46501 * 109.46981 * 180.02562 * 7 4 2 9 9 C 1.34771 * 119.99636 * 180.02562 * 8 7 4 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 7 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.47016 * 59.99326 * 1 2 3 26 26 H 1.08999 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46674 * 299.99900 * 1 2 3 28 28 H 1.09006 * 109.46983 * 240.00239 * 2 1 3 29 29 H 1.08996 * 109.47431 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46955 * 300.00291 * 3 2 1 31 31 H 1.09006 * 109.46741 * 60.00092 * 3 2 1 32 32 H 0.96706 * 113.99825 * 59.99771 * 6 4 2 33 33 H 1.09003 * 109.46589 * 60.00610 * 7 4 2 34 34 H 1.08998 * 109.47214 * 300.00317 * 7 4 2 35 35 H 0.96994 * 120.00230 * 0.02562 * 8 7 4 36 36 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 38 38 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 8 1.4703 -0.1190 2.4131 7 6 1.6352 -2.1956 1.1879 8 7 2.1231 -2.8861 2.3843 9 6 1.8829 -4.2021 2.5477 10 8 1.2609 -4.8162 1.7025 11 6 2.3741 -4.8980 3.7537 12 6 3.0943 -4.1898 4.7233 13 6 3.5448 -4.8267 5.8412 14 6 3.2950 -6.2024 6.0143 15 6 3.7649 -6.8676 7.1667 16 1 3.9398 -7.9330 7.1416 17 6 4.0048 -6.1452 8.3444 18 7 3.4815 -4.9584 8.5007 19 14 5.0724 -6.8798 9.6896 20 1 6.4300 -7.1502 9.1518 21 1 5.1704 -5.9235 10.8215 22 1 4.4663 -8.1495 10.1647 23 6 2.5748 -6.9121 5.0331 24 6 2.1237 -6.2653 3.9212 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8901 32 1 0.5042 -0.1509 2.4395 33 1 2.0698 -2.6551 0.3001 34 1 0.5489 -2.2724 1.1420 35 1 2.6189 -2.3962 3.0587 36 1 3.2889 -3.1362 4.5877 37 1 4.0968 -4.2787 6.5905 38 1 3.6477 -4.4585 9.3153 39 1 2.3813 -7.9667 5.1613 40 1 1.5719 -6.8085 3.1682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270422808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -112.516419 kcal Electronic energy + Delta-G solvation = -20881.418308 eV Core-core repulsion = 17658.920889 eV Total energy + Delta-G solvation = -3222.497420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91043 -39.59475 -38.73349 -35.67137 -35.29392 -34.72721 -32.16857 -31.30516 -29.67841 -28.11764 -27.52444 -24.58932 -23.30582 -22.71190 -21.52970 -20.75253 -19.36904 -18.67186 -17.62562 -17.24491 -16.98104 -16.62466 -15.98623 -15.74254 -15.52249 -15.17588 -14.98061 -14.69026 -14.41524 -13.93093 -13.72108 -13.64535 -13.40306 -13.16332 -12.97614 -12.88165 -12.84343 -12.62976 -12.36493 -12.22098 -11.80114 -11.78326 -11.54173 -11.36919 -11.13180 -11.02159 -10.61395 -10.07000 -9.57839 -9.40792 -8.79244 -6.48531 0.44051 1.14662 1.39111 1.44881 1.52634 2.11839 2.18111 2.35775 2.78544 3.46947 3.64211 3.69249 3.87021 3.96883 4.20034 4.26936 4.31718 4.40309 4.44249 4.65110 4.73766 4.80437 4.91991 4.92465 5.01099 5.02779 5.05261 5.15602 5.19488 5.29713 5.39851 5.45807 5.55462 5.59773 5.82031 5.94269 5.99219 6.22290 6.53604 6.67669 6.74380 6.76857 6.88722 7.43234 8.15814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.003398 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.490903 B = 8238.798735 C = 8963.180194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.109 3.891 5 H 0.106 0.894 6 O -0.566 6.566 7 C 0.088 3.912 8 N -0.720 5.720 9 C 0.570 3.430 10 O -0.608 6.608 11 C -0.296 4.296 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.474 4.474 16 H 0.086 0.914 17 C 0.038 3.962 18 N -0.798 5.798 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.032 4.032 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.383 0.617 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 11.787 -8.633 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.139 4.139 3 C -0.197 4.197 4 C 0.049 3.951 5 H 0.124 0.876 6 O -0.374 6.374 7 C -0.036 4.036 8 N -0.372 5.372 9 C 0.363 3.637 10 O -0.493 6.493 11 C -0.300 4.300 12 C -0.072 4.072 13 C -0.218 4.218 14 C 0.099 3.901 15 C -0.501 4.501 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.421 5.421 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.273 4.273 24 C -0.051 4.051 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.567 11.723 -8.932 14.748 hybrid contribution -0.157 -0.437 0.689 0.831 sum -0.724 11.286 -8.242 13.994 Atomic orbital electron populations 1.21941 0.94392 1.02058 1.03107 1.21685 0.97074 0.97587 0.97566 1.21733 1.01010 0.94697 1.02249 1.22182 0.98963 0.87817 0.86095 0.87587 1.86568 1.26598 1.81101 1.43102 1.22193 0.99823 0.93647 0.87917 1.45682 1.58540 1.08634 1.24379 1.18411 0.77838 0.81931 0.85491 1.90606 1.44720 1.67572 1.46362 1.19194 1.16627 0.95184 0.99000 1.20715 0.95393 0.98195 0.92925 1.21010 1.06598 0.95797 0.98358 1.18131 0.87076 0.92865 0.92053 1.20107 1.37747 0.96836 0.95412 0.89569 1.26945 0.94634 0.94668 1.01919 1.69763 1.32183 1.12245 1.27897 0.85144 0.78786 0.79206 0.76053 1.18233 1.18775 1.18231 1.20865 1.08284 0.99774 0.98413 1.20507 0.95534 0.93470 0.95639 0.91103 0.92851 0.91722 0.89570 0.92623 0.91619 0.92542 0.76693 0.91465 0.91673 0.75514 0.86196 0.86861 0.89145 0.87698 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.53 71.98 0.61 -1.53 16 2 C -0.12 -1.76 2.75 -10.79 -0.03 -1.79 16 3 C -0.14 -1.88 9.09 71.98 0.65 -1.22 16 4 C 0.11 2.09 2.80 30.60 0.09 2.17 16 5 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 6 O -0.57 -11.75 12.52 -148.98 -1.86 -13.61 16 7 C 0.09 2.26 5.09 86.38 0.44 2.70 16 8 N -0.72 -23.62 5.40 -466.15 -2.52 -26.13 16 9 C 0.57 24.39 7.76 86.73 0.67 25.06 16 10 O -0.61 -29.20 16.32 -4.01 -0.07 -29.27 16 11 C -0.30 -13.79 5.89 -19.93 -0.12 -13.90 16 12 C -0.05 -2.40 9.47 22.25 0.21 -2.19 16 13 C -0.20 -9.97 8.63 22.47 0.19 -9.78 16 14 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 15 C -0.47 -24.11 9.04 23.46 0.21 -23.90 16 16 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.75 5.14 85.35 0.44 2.19 16 18 N -0.80 -38.44 10.95 21.87 0.24 -38.20 16 19 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 23 C -0.25 -12.77 9.73 22.47 0.22 -12.55 16 24 C -0.03 -1.58 9.52 22.25 0.21 -1.36 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.83 6.56 -2.39 -0.02 0.81 16 27 H 0.06 0.80 6.72 -2.39 -0.02 0.78 16 28 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.84 7.82 -2.38 -0.02 0.82 16 32 H 0.38 6.30 7.19 -74.05 -0.53 5.77 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.72 6.56 -2.39 -0.02 1.70 16 35 H 0.41 12.37 6.35 -92.71 -0.59 11.78 16 36 H 0.12 4.53 6.37 -2.91 -0.02 4.51 16 37 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 38 H 0.30 12.75 8.29 -92.70 -0.77 11.99 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -62.04 329.62 1.45 -60.58 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.06 Total: 40.55 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.69 Total: -30.86 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -2.28 Total: -64.33 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.93 Total: -42.88 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -62.04 1.45 -60.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270422808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.936 kcal (2) G-P(sol) polarization free energy of solvation -62.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds