Wall clock time and date at job start Mon Mar 30 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 C 1.53003 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47132 * 305.00842 * 4 3 2 6 6 O 1.42905 * 109.46801 * 65.00443 * 4 3 2 7 7 C 1.53002 * 109.47324 * 185.00030 * 4 3 2 8 8 N 1.46501 * 109.46981 * 180.02562 * 7 4 3 9 9 C 1.34771 * 119.99636 * 180.02562 * 8 7 4 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 7 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47050 * 299.99376 * 1 2 3 27 27 H 1.09001 * 109.47792 * 59.99605 * 1 2 3 28 28 H 1.09006 * 109.47050 * 240.00624 * 2 1 3 29 29 H 1.08996 * 109.47340 * 120.00398 * 2 1 3 30 30 H 1.09006 * 109.46741 * 60.00435 * 3 2 1 31 31 H 1.08996 * 109.47431 * 300.00342 * 3 2 1 32 32 H 0.96706 * 113.99825 * 59.99771 * 6 4 3 33 33 H 1.09003 * 109.46589 * 60.00610 * 7 4 3 34 34 H 1.08998 * 109.47214 * 300.00317 * 7 4 3 35 35 H 0.96994 * 120.00230 * 0.02562 * 8 7 4 36 36 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 38 38 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8426 6 8 4.0467 0.8731 -1.2202 7 6 4.0798 2.8797 0.1264 8 7 5.5448 2.8797 0.1264 9 6 6.2186 4.0424 0.2286 10 8 5.6106 5.0914 0.3204 11 6 7.6950 4.0427 0.2281 12 6 8.3930 2.8331 0.1272 13 6 9.7561 2.8287 0.1204 14 6 10.4627 4.0429 0.2272 15 6 11.8738 4.0430 0.2272 16 1 12.4137 4.8557 0.6902 17 6 12.5750 2.9879 -0.3741 18 7 11.9690 2.2004 -1.2223 19 14 14.3754 2.7085 0.0377 20 1 14.5158 2.4491 1.4931 21 1 14.8817 1.5386 -0.7241 22 1 15.1599 3.9151 -0.3280 23 6 9.7560 5.2570 0.3343 24 6 8.3928 5.2518 0.3348 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6765 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7616 1.3475 -2.0132 33 1 3.7161 3.3140 1.0576 34 1 3.7168 3.4690 -0.7156 35 1 6.0299 2.0430 0.0528 36 1 7.8504 1.9025 0.0496 37 1 10.2936 1.8955 0.0385 38 1 12.4540 1.4704 -1.6380 39 1 10.2933 6.1902 0.4168 40 1 7.8502 6.1819 0.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270432484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:01 Heat of formation + Delta-G solvation = -98.754147 kcal Electronic energy + Delta-G solvation = -20555.719759 eV Core-core repulsion = 17333.819116 eV Total energy + Delta-G solvation = -3221.900643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.29856 -38.08622 -36.97354 -34.38608 -33.85783 -33.80673 -30.63003 -29.58640 -29.39831 -26.66339 -25.27130 -22.38687 -21.68095 -21.38203 -20.84893 -19.49485 -17.52080 -17.17645 -16.43984 -16.23039 -15.54245 -15.04158 -14.88580 -14.24471 -13.95256 -13.93283 -13.79005 -13.42038 -13.15491 -12.70234 -12.43239 -12.08369 -12.06108 -11.96732 -11.86703 -11.50632 -11.34166 -11.25326 -10.99157 -10.94170 -10.88935 -10.63023 -10.11437 -10.04837 -9.54186 -9.33133 -8.95367 -8.59258 -7.70294 -7.52902 -7.02185 -4.59037 2.25171 2.93210 2.95148 2.99189 3.05404 3.69264 3.74632 3.88319 4.32358 4.49839 4.58583 4.73276 4.76099 5.02840 5.06110 5.31552 5.39349 5.56691 5.59086 5.59629 5.70050 5.80413 5.84837 6.06231 6.08186 6.08455 6.15024 6.33304 6.78446 6.83979 6.94005 7.07155 7.15207 7.45040 7.50839 7.67196 7.81263 7.87391 8.08504 8.27237 8.41285 8.64295 8.76876 9.09150 9.89789 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.003162 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.860691 B = 8851.889657 C = 9650.332279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.095 3.905 5 H 0.104 0.896 6 O -0.556 6.556 7 C 0.092 3.908 8 N -0.737 5.737 9 C 0.570 3.430 10 O -0.579 6.579 11 C -0.285 4.285 12 C -0.062 4.062 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.771 5.771 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.022 4.022 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.376 0.624 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.402 0.598 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 -6.206 0.753 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.187 4.187 4 C 0.035 3.965 5 H 0.121 0.879 6 O -0.362 6.362 7 C -0.033 4.033 8 N -0.390 5.390 9 C 0.365 3.635 10 O -0.462 6.462 11 C -0.289 4.289 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.394 5.394 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.259 4.259 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.238 0.762 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.905 -6.103 1.054 14.314 hybrid contribution 0.690 -0.163 -0.335 0.784 sum -12.215 -6.267 0.719 13.748 Atomic orbital electron populations 1.21787 0.96001 1.01553 1.01705 1.21454 0.95458 0.96234 1.02688 1.22253 0.95318 0.97950 1.03175 1.22225 0.92881 0.93126 0.88252 0.87859 1.86592 1.77120 1.56890 1.15574 1.21885 0.82419 0.96605 1.02376 1.45793 1.05580 1.10137 1.77528 1.18617 0.88292 0.82337 0.74216 1.90626 1.70821 1.31752 1.52984 1.18891 0.89817 0.94858 1.25344 1.20495 0.94868 0.94735 0.97978 1.20978 0.92409 0.98649 1.07743 1.17788 0.93280 0.90943 0.85468 1.19816 0.91682 1.05359 1.30206 0.89753 1.26104 1.01614 0.94366 0.92644 1.69740 1.39173 1.13117 1.17400 0.86257 0.80998 0.78922 0.80065 1.18485 1.20053 1.18669 1.20713 0.93183 0.97068 1.14952 1.20359 0.93844 0.95702 0.94250 0.92799 0.92837 0.92831 0.91263 0.92007 0.90764 0.91336 0.77698 0.91356 0.91950 0.76229 0.89227 0.86185 0.90162 0.88395 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.69 16 2 C -0.12 -0.96 5.83 -26.73 -0.16 -1.11 16 3 C -0.15 -1.22 4.89 -26.73 -0.13 -1.35 16 4 C 0.09 0.98 3.05 -26.73 -0.08 0.90 16 5 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 6 O -0.56 -6.19 12.62 -35.23 -0.44 -6.64 16 7 C 0.09 1.24 5.34 -4.04 -0.02 1.22 16 8 N -0.74 -12.53 5.40 -61.31 -0.33 -12.86 16 9 C 0.57 12.36 7.76 -12.42 -0.10 12.26 16 10 O -0.58 -13.98 16.32 5.28 0.09 -13.90 16 11 C -0.28 -6.63 5.89 -104.73 -0.62 -7.25 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 16 14 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 15 C -0.44 -11.10 9.04 -37.74 -0.34 -11.44 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 18 N -0.77 -18.63 10.95 55.56 0.61 -18.02 16 19 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.38 3.17 9.05 45.56 0.41 3.58 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 6.44 6.35 -40.82 -0.26 6.18 16 36 H 0.09 1.75 6.37 -52.49 -0.33 1.42 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 38 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -29.17 336.92 -8.36 -37.53 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.09 Total: 13.29 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.23 Total: -16.82 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.28 Total: -30.88 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.36 Total: -20.54 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.17 -8.36 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270432484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.227 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds