Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 C 1.53003 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47132 * 305.00842 * 4 3 2 6 6 O 1.42905 * 109.46801 * 65.00443 * 4 3 2 7 7 C 1.53002 * 109.47324 * 185.00030 * 4 3 2 8 8 N 1.46501 * 109.46981 * 180.02562 * 7 4 3 9 9 C 1.34771 * 119.99636 * 180.02562 * 8 7 4 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 7 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47050 * 299.99376 * 1 2 3 27 27 H 1.09001 * 109.47792 * 59.99605 * 1 2 3 28 28 H 1.09006 * 109.47050 * 240.00624 * 2 1 3 29 29 H 1.08996 * 109.47340 * 120.00398 * 2 1 3 30 30 H 1.09006 * 109.46741 * 60.00435 * 3 2 1 31 31 H 1.08996 * 109.47431 * 300.00342 * 3 2 1 32 32 H 0.96706 * 113.99825 * 59.99771 * 6 4 3 33 33 H 1.09003 * 109.46589 * 60.00610 * 7 4 3 34 34 H 1.08998 * 109.47214 * 300.00317 * 7 4 3 35 35 H 0.96994 * 120.00230 * 0.02562 * 8 7 4 36 36 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 38 38 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8426 6 8 4.0467 0.8731 -1.2202 7 6 4.0798 2.8797 0.1264 8 7 5.5448 2.8797 0.1264 9 6 6.2186 4.0424 0.2286 10 8 5.6106 5.0914 0.3204 11 6 7.6950 4.0427 0.2281 12 6 8.3930 2.8331 0.1272 13 6 9.7561 2.8287 0.1204 14 6 10.4627 4.0429 0.2272 15 6 11.8738 4.0430 0.2272 16 1 12.4137 4.8557 0.6902 17 6 12.5750 2.9879 -0.3741 18 7 11.9690 2.2004 -1.2223 19 14 14.3754 2.7085 0.0377 20 1 14.5158 2.4491 1.4931 21 1 14.8817 1.5386 -0.7241 22 1 15.1599 3.9151 -0.3280 23 6 9.7560 5.2570 0.3343 24 6 8.3928 5.2518 0.3348 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6765 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7616 1.3475 -2.0132 33 1 3.7161 3.3140 1.0576 34 1 3.7168 3.4690 -0.7156 35 1 6.0299 2.0430 0.0528 36 1 7.8504 1.9025 0.0496 37 1 10.2936 1.8955 0.0385 38 1 12.4540 1.4704 -1.6380 39 1 10.2933 6.1902 0.4168 40 1 7.8502 6.1819 0.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270432484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = -117.470485 kcal Electronic energy + Delta-G solvation = -20556.531360 eV Core-core repulsion = 17333.819116 eV Total energy + Delta-G solvation = -3222.712244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85497 -39.29636 -38.61989 -35.67253 -35.32946 -34.97512 -32.24733 -31.31138 -30.69760 -28.08010 -26.61203 -23.77248 -23.00465 -22.58647 -22.17785 -21.10945 -19.36926 -18.64551 -17.48065 -17.31041 -17.16296 -16.48100 -15.92862 -15.75720 -15.45042 -15.12054 -15.09911 -14.77049 -14.44409 -14.15234 -13.86744 -13.70410 -13.51423 -13.18169 -12.85277 -12.74107 -12.67399 -12.61626 -12.36202 -12.19945 -11.79582 -11.70124 -11.50749 -11.37321 -11.13773 -11.04316 -10.62446 -10.08268 -9.57919 -9.40982 -8.79397 -6.48517 0.43889 1.14580 1.39009 1.44801 1.52560 2.11686 2.17986 2.35918 2.78444 3.48062 3.62734 3.69086 3.96802 4.05945 4.23931 4.27040 4.31756 4.38182 4.44199 4.64235 4.66499 4.77150 4.92181 4.93781 4.99739 5.02804 5.08186 5.15649 5.26754 5.29708 5.38968 5.48958 5.54827 5.59537 5.81986 5.94213 5.99168 6.22201 6.53537 6.68672 6.76651 6.79189 6.88646 7.43135 8.15677 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.003162 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.860691 B = 8851.889657 C = 9650.332279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.107 3.893 5 H 0.105 0.895 6 O -0.569 6.569 7 C 0.089 3.911 8 N -0.721 5.721 9 C 0.570 3.430 10 O -0.608 6.608 11 C -0.295 4.295 12 C -0.053 4.053 13 C -0.199 4.199 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.798 5.798 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.033 4.033 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.387 0.613 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 -7.486 0.741 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.180 4.180 4 C 0.047 3.953 5 H 0.123 0.877 6 O -0.376 6.376 7 C -0.035 4.035 8 N -0.372 5.372 9 C 0.363 3.637 10 O -0.493 6.493 11 C -0.300 4.300 12 C -0.072 4.072 13 C -0.218 4.218 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.421 5.421 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.273 4.273 24 C -0.052 4.052 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.245 0.755 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.342 -7.411 1.027 15.296 hybrid contribution 0.714 0.226 -0.368 0.834 sum -12.628 -7.186 0.659 14.544 Atomic orbital electron populations 1.21775 0.95168 1.01970 1.02023 1.21427 0.96161 0.95755 1.02308 1.22198 0.93442 0.98443 1.03937 1.22142 0.94182 0.90761 0.88190 0.87743 1.86571 1.77520 1.57277 1.16274 1.22152 0.79915 0.99005 1.02412 1.45679 1.07245 1.08874 1.75452 1.18416 0.87725 0.83177 0.74376 1.90607 1.71112 1.33026 1.54546 1.19189 0.91215 0.94791 1.24767 1.20713 0.94287 0.95827 0.96376 1.21014 0.93326 0.98154 1.09311 1.18144 0.94189 0.91635 0.86269 1.20099 0.91861 1.06714 1.31325 0.89562 1.26954 1.06062 0.93411 0.91802 1.69763 1.41207 1.13477 1.17659 0.85142 0.75070 0.79153 0.79814 1.18220 1.18778 1.18219 1.20861 0.93595 0.97269 1.15575 1.20515 0.93844 0.96418 0.94444 0.92392 0.92496 0.92544 0.91918 0.92147 0.90108 0.90526 0.76366 0.91345 0.91914 0.75491 0.86183 0.86848 0.89141 0.87693 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.64 5.83 30.59 0.18 -1.46 16 3 C -0.14 -2.01 4.89 30.60 0.15 -1.86 16 4 C 0.11 1.98 3.05 30.60 0.09 2.07 16 5 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 6 O -0.57 -11.46 12.62 -148.98 -1.88 -13.34 16 7 C 0.09 2.24 5.34 86.38 0.46 2.71 16 8 N -0.72 -23.44 5.40 -466.15 -2.52 -25.96 16 9 C 0.57 24.32 7.76 86.73 0.67 24.99 16 10 O -0.61 -29.17 16.32 -4.01 -0.07 -29.24 16 11 C -0.30 -13.74 5.89 -19.93 -0.12 -13.86 16 12 C -0.05 -2.39 9.47 22.25 0.21 -2.17 16 13 C -0.20 -9.99 8.63 22.47 0.19 -9.80 16 14 C 0.10 5.30 5.58 -21.28 -0.12 5.19 16 15 C -0.47 -24.04 9.04 23.46 0.21 -23.83 16 16 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.72 5.14 85.35 0.44 2.16 16 18 N -0.80 -38.46 10.95 21.87 0.24 -38.22 16 19 Si 0.99 34.90 29.60 68.60 2.03 36.93 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 21 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 22 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 23 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 24 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.95 7.82 -2.38 -0.02 0.94 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.39 5.73 9.05 -74.05 -0.67 5.06 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 12.28 6.35 -92.71 -0.59 11.69 16 36 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 37 H 0.11 5.77 6.16 -2.91 -0.02 5.76 16 38 H 0.30 12.76 8.29 -92.70 -0.77 11.99 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 40 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -62.44 336.92 1.12 -61.31 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.21 Total: 39.38 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.52 Total: -30.86 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -2.28 Total: -64.18 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.95 Total: -42.58 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -62.44 1.12 -61.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270432484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.158 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds