Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 C 1.52993 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47035 * 54.99957 * 4 3 2 6 6 O 1.42899 * 109.47133 * 295.00198 * 4 3 2 7 7 C 1.52998 * 109.47171 * 174.99605 * 4 3 2 8 8 N 1.46503 * 109.47244 * 184.99628 * 7 4 3 9 9 C 1.34780 * 120.00144 * 180.02562 * 8 7 4 10 10 O 1.21584 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.47641 * 119.99823 * 180.02562 * 9 8 7 12 12 C 1.40006 * 119.89855 * 359.72656 * 11 9 8 13 13 C 1.36314 * 120.10894 * 179.71825 * 12 11 9 14 14 C 1.40888 * 119.88879 * 0.57787 * 13 12 11 15 15 C 1.41115 * 120.10243 * 179.67339 * 14 13 12 16 16 H 1.07999 * 119.99589 * 204.64325 * 15 14 13 17 17 C 1.40224 * 119.99986 * 24.64930 * 15 14 13 18 18 N 1.30641 * 120.00106 * 17.87010 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 197.87326 * 17 15 14 20 20 H 1.48497 * 109.47193 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46646 * 119.99918 * 19 17 15 22 22 H 1.48500 * 109.46883 * 239.99786 * 19 17 15 23 23 C 1.40889 * 119.79378 * 359.69984 * 14 13 12 24 24 C 1.36311 * 119.89198 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46897 * 60.00364 * 1 2 3 26 26 H 1.08998 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47196 * 299.99948 * 1 2 3 28 28 H 1.09001 * 109.46925 * 120.00191 * 2 1 3 29 29 H 1.08999 * 109.47196 * 240.00052 * 2 1 3 30 30 H 1.09007 * 109.46709 * 300.00023 * 3 2 1 31 31 H 1.08999 * 109.47041 * 59.99957 * 3 2 1 32 32 H 0.96703 * 113.99827 * 299.99494 * 6 4 3 33 33 H 1.08997 * 109.47349 * 305.00251 * 7 4 3 34 34 H 1.08998 * 109.47037 * 65.00107 * 7 4 3 35 35 H 0.97003 * 120.00080 * 0.02562 * 8 7 4 36 36 H 1.08004 * 119.94792 * 0.02562 * 12 11 9 37 37 H 1.07996 * 120.05803 * 180.25030 * 13 12 11 38 38 H 0.97001 * 120.00492 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.05216 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.95241 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8795 -0.1265 8 7 5.5399 2.8708 -0.2471 9 6 6.2130 4.0321 -0.3699 10 8 5.6084 5.0869 -0.3801 11 6 7.6843 4.0232 -0.4920 12 6 8.3787 2.8076 -0.4742 13 6 9.7366 2.7940 -0.5924 14 6 10.4424 4.0067 -0.7204 15 6 11.8488 3.9983 -0.8361 16 1 12.4200 4.8661 -0.5411 17 6 12.5045 2.8633 -1.3341 18 7 11.8358 1.9652 -2.0072 19 14 14.3343 2.6353 -1.0350 20 1 14.8547 3.7845 -0.2516 21 1 14.5590 1.3780 -0.2773 22 1 15.0434 2.5618 -2.3376 23 6 9.7397 5.2278 -0.7319 24 6 8.3812 5.2309 -0.6198 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 3.7619 1.3473 2.0131 33 1 3.6449 3.3432 -1.0118 34 1 3.7919 3.4461 0.7591 35 1 6.0223 2.0293 -0.2386 36 1 7.8372 1.8788 -0.3717 37 1 10.2711 1.8557 -0.5826 38 1 12.2894 1.1803 -2.3520 39 1 10.2765 6.1598 -0.8293 40 1 7.8415 6.1663 -0.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270432486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -98.739203 kcal Electronic energy + Delta-G solvation = -20542.561460 eV Core-core repulsion = 17320.661465 eV Total energy + Delta-G solvation = -3221.899995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.29927 -38.09459 -36.97961 -34.38292 -33.86470 -33.83089 -30.62969 -29.58232 -29.40075 -26.66663 -25.27354 -22.39014 -21.70395 -21.38144 -20.85317 -19.49791 -17.52639 -17.18376 -16.43705 -16.23604 -15.54349 -15.05586 -14.87395 -14.24548 -13.95158 -13.94763 -13.78473 -13.42735 -13.15638 -12.71559 -12.43836 -12.09824 -12.05911 -11.95547 -11.87946 -11.50800 -11.35601 -11.26340 -10.96398 -10.93437 -10.89524 -10.64170 -10.12252 -10.02798 -9.55394 -9.33913 -8.95578 -8.59675 -7.70658 -7.53113 -7.02789 -4.59240 2.24157 2.91097 2.95804 3.01374 3.05149 3.69654 3.74765 3.87771 4.29737 4.49973 4.58300 4.73313 4.75953 5.02586 5.06359 5.31579 5.39116 5.56561 5.58867 5.59493 5.70016 5.80711 5.84434 6.05517 6.07934 6.08236 6.14872 6.33001 6.78135 6.83730 6.93600 7.06859 7.14810 7.44998 7.49653 7.66804 7.80916 7.87502 8.08210 8.26409 8.41287 8.64208 8.76569 9.08707 9.89248 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.003150 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.545719 B = 8886.091620 C = 9648.262695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.094 3.906 5 H 0.104 0.896 6 O -0.557 6.557 7 C 0.093 3.907 8 N -0.737 5.737 9 C 0.571 3.429 10 O -0.579 6.579 11 C -0.284 4.284 12 C -0.062 4.062 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.771 5.771 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.375 0.625 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.637 -5.903 3.046 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.187 4.187 4 C 0.035 3.965 5 H 0.122 0.878 6 O -0.362 6.362 7 C -0.032 4.032 8 N -0.391 5.391 9 C 0.366 3.634 10 O -0.462 6.462 11 C -0.289 4.289 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.394 5.394 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.259 4.259 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.222 0.778 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.777 -5.812 2.484 14.255 hybrid contribution 0.685 -0.188 0.293 0.768 sum -12.092 -6.000 2.777 13.782 Atomic orbital electron populations 1.21788 0.95996 1.01557 1.01704 1.21458 0.95464 0.96230 1.02693 1.22251 0.95294 0.97961 1.03181 1.22225 0.92892 0.93154 0.88228 0.87799 1.86595 1.77141 1.56913 1.15550 1.21893 0.82525 0.96584 1.02220 1.45813 1.06092 1.09825 1.77337 1.18615 0.88181 0.82416 0.74237 1.90624 1.70766 1.31298 1.53467 1.18892 0.90067 0.94652 1.25284 1.20490 0.94925 0.94630 0.98032 1.20978 0.92691 0.98894 1.07212 1.17801 0.93234 0.91166 0.85322 1.19876 0.92101 0.99876 1.35123 0.89679 1.26105 1.01631 0.94685 0.92310 1.69749 1.38989 1.08610 1.22102 0.86174 0.81178 0.79705 0.79302 1.18065 1.19377 1.19679 1.20713 0.93246 0.97362 1.14556 1.20360 0.93867 0.95730 0.94206 0.92828 0.92796 0.92836 0.91282 0.91982 0.90739 0.91345 0.77777 0.91344 0.91928 0.76303 0.89244 0.86180 0.90283 0.88387 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.96 5.83 -26.73 -0.16 -1.12 16 3 C -0.15 -1.22 4.89 -26.73 -0.13 -1.36 16 4 C 0.09 0.98 3.00 -26.74 -0.08 0.90 16 5 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 6 O -0.56 -6.10 12.82 -35.23 -0.45 -6.55 16 7 C 0.09 1.25 5.31 -4.04 -0.02 1.23 16 8 N -0.74 -12.54 5.45 -61.31 -0.33 -12.87 16 9 C 0.57 12.36 7.76 -12.42 -0.10 12.26 16 10 O -0.58 -13.97 16.32 5.29 0.09 -13.88 16 11 C -0.28 -6.62 5.89 -104.73 -0.62 -7.24 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 14 C 0.13 3.29 5.58 -106.80 -0.60 2.70 16 15 C -0.44 -11.07 9.04 -37.75 -0.34 -11.41 16 16 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.59 10.95 55.56 0.61 -17.98 16 19 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.24 -5.86 9.73 -39.27 -0.38 -6.25 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 7.82 -51.93 -0.41 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.37 3.03 9.05 45.56 0.41 3.44 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 6.41 6.47 -40.82 -0.26 6.14 16 36 H 0.09 1.75 6.37 -52.48 -0.33 1.41 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 38 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -29.23 337.22 -8.37 -37.60 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.09 Total: 13.07 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.23 Total: -16.79 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.27 Total: -30.85 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.37 Total: -20.43 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.23 -8.37 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270432486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.142 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds