Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 C 1.52993 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47035 * 54.99957 * 4 3 2 6 6 O 1.42899 * 109.47133 * 295.00198 * 4 3 2 7 7 C 1.52998 * 109.47171 * 174.99605 * 4 3 2 8 8 N 1.46503 * 109.47244 * 184.99628 * 7 4 3 9 9 C 1.34780 * 120.00144 * 180.02562 * 8 7 4 10 10 O 1.21584 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.47641 * 119.99823 * 180.02562 * 9 8 7 12 12 C 1.40006 * 119.89855 * 359.72656 * 11 9 8 13 13 C 1.36314 * 120.10894 * 179.71825 * 12 11 9 14 14 C 1.40888 * 119.88879 * 0.57787 * 13 12 11 15 15 C 1.41115 * 120.10243 * 179.67339 * 14 13 12 16 16 H 1.07999 * 119.99589 * 204.64325 * 15 14 13 17 17 C 1.40224 * 119.99986 * 24.64930 * 15 14 13 18 18 N 1.30641 * 120.00106 * 17.87010 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 197.87326 * 17 15 14 20 20 H 1.48497 * 109.47193 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46646 * 119.99918 * 19 17 15 22 22 H 1.48500 * 109.46883 * 239.99786 * 19 17 15 23 23 C 1.40889 * 119.79378 * 359.69984 * 14 13 12 24 24 C 1.36311 * 119.89198 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46897 * 60.00364 * 1 2 3 26 26 H 1.08998 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47196 * 299.99948 * 1 2 3 28 28 H 1.09001 * 109.46925 * 120.00191 * 2 1 3 29 29 H 1.08999 * 109.47196 * 240.00052 * 2 1 3 30 30 H 1.09007 * 109.46709 * 300.00023 * 3 2 1 31 31 H 1.08999 * 109.47041 * 59.99957 * 3 2 1 32 32 H 0.96703 * 113.99827 * 299.99494 * 6 4 3 33 33 H 1.08997 * 109.47349 * 305.00251 * 7 4 3 34 34 H 1.08998 * 109.47037 * 65.00107 * 7 4 3 35 35 H 0.97003 * 120.00080 * 0.02562 * 8 7 4 36 36 H 1.08004 * 119.94792 * 0.02562 * 12 11 9 37 37 H 1.07996 * 120.05803 * 180.25030 * 13 12 11 38 38 H 0.97001 * 120.00492 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.05216 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.95241 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8795 -0.1265 8 7 5.5399 2.8708 -0.2471 9 6 6.2130 4.0321 -0.3699 10 8 5.6084 5.0869 -0.3801 11 6 7.6843 4.0232 -0.4920 12 6 8.3787 2.8076 -0.4742 13 6 9.7366 2.7940 -0.5924 14 6 10.4424 4.0067 -0.7204 15 6 11.8488 3.9983 -0.8361 16 1 12.4200 4.8661 -0.5411 17 6 12.5045 2.8633 -1.3341 18 7 11.8358 1.9652 -2.0072 19 14 14.3343 2.6353 -1.0350 20 1 14.8547 3.7845 -0.2516 21 1 14.5590 1.3780 -0.2773 22 1 15.0434 2.5618 -2.3376 23 6 9.7397 5.2278 -0.7319 24 6 8.3812 5.2309 -0.6198 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 3.7619 1.3473 2.0131 33 1 3.6449 3.3432 -1.0118 34 1 3.7919 3.4461 0.7591 35 1 6.0223 2.0293 -0.2386 36 1 7.8372 1.8788 -0.3717 37 1 10.2711 1.8557 -0.5826 38 1 12.2894 1.1803 -2.3520 39 1 10.2765 6.1598 -0.8293 40 1 7.8415 6.1663 -0.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270432486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = -117.575823 kcal Electronic energy + Delta-G solvation = -20543.378277 eV Core-core repulsion = 17320.661465 eV Total energy + Delta-G solvation = -3222.716812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85592 -39.29693 -38.62483 -35.67522 -35.33703 -34.98611 -32.24907 -31.31377 -30.68854 -28.08270 -26.61484 -23.77261 -23.01756 -22.59803 -22.18147 -21.10914 -19.37445 -18.64822 -17.46774 -17.32561 -17.16666 -16.47111 -15.93290 -15.76210 -15.45980 -15.11048 -15.09565 -14.77407 -14.45253 -14.15968 -13.87307 -13.69712 -13.53058 -13.18357 -12.85683 -12.74903 -12.65667 -12.61477 -12.38021 -12.20213 -11.76906 -11.70469 -11.50954 -11.37997 -11.14527 -11.05259 -10.62084 -10.08543 -9.58135 -9.41060 -8.79850 -6.48631 0.43309 1.14412 1.38535 1.42319 1.55699 2.11475 2.17840 2.36029 2.78002 3.46708 3.62704 3.68866 3.97380 4.05144 4.23542 4.26985 4.31425 4.38106 4.44021 4.63619 4.66607 4.77030 4.92007 4.93607 4.99508 5.02937 5.08132 5.15455 5.26632 5.29535 5.38709 5.48859 5.54745 5.59485 5.81760 5.94036 5.99220 6.22008 6.53607 6.68267 6.76650 6.80026 6.88450 7.42768 8.15611 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.003150 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.545719 B = 8886.091620 C = 9648.262695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.107 3.893 5 H 0.103 0.897 6 O -0.569 6.569 7 C 0.090 3.910 8 N -0.721 5.721 9 C 0.570 3.430 10 O -0.608 6.608 11 C -0.295 4.295 12 C -0.053 4.053 13 C -0.199 4.199 14 C 0.101 3.899 15 C -0.472 4.472 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.798 5.798 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.260 1.260 22 H -0.263 1.263 23 C -0.253 4.253 24 C -0.033 4.033 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.387 0.613 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 -7.186 3.327 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.180 4.180 4 C 0.047 3.953 5 H 0.121 0.879 6 O -0.376 6.376 7 C -0.034 4.034 8 N -0.373 5.373 9 C 0.363 3.637 10 O -0.493 6.493 11 C -0.299 4.299 12 C -0.072 4.072 13 C -0.218 4.218 14 C 0.097 3.903 15 C -0.499 4.499 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.421 5.421 19 Si 0.808 3.192 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.273 4.273 24 C -0.052 4.052 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.222 -7.124 2.773 15.273 hybrid contribution 0.712 0.196 0.201 0.765 sum -12.510 -6.928 2.973 14.606 Atomic orbital electron populations 1.21776 0.95152 1.01974 1.02030 1.21431 0.96177 0.95761 1.02300 1.22197 0.93416 0.98446 1.03958 1.22121 0.94185 0.90769 0.88194 0.87904 1.86573 1.77527 1.57287 1.16231 1.22160 0.80040 0.98985 1.02242 1.45704 1.07725 1.08593 1.75282 1.18414 0.87625 0.83245 0.74397 1.90605 1.71067 1.32571 1.55019 1.19190 0.91449 0.94589 1.24718 1.20711 0.94336 0.95723 0.96436 1.21012 0.93621 0.98394 1.08764 1.18153 0.94127 0.91871 0.86110 1.20138 0.92248 1.01124 1.36379 0.89624 1.26950 1.06237 0.93729 0.91313 1.69765 1.41130 1.09134 1.22089 0.85056 0.75041 0.79710 0.79386 1.18026 1.18445 1.18792 1.20861 0.93658 0.97562 1.15188 1.20516 0.93863 0.96449 0.94398 0.92571 0.92393 0.92450 0.91822 0.92264 0.90226 0.90364 0.76313 0.91463 0.91747 0.75542 0.86172 0.86847 0.89159 0.87702 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.65 5.83 30.60 0.18 -1.47 16 3 C -0.14 -2.01 4.89 30.59 0.15 -1.86 16 4 C 0.11 1.99 3.00 30.59 0.09 2.08 16 5 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 6 O -0.57 -11.21 12.82 -148.98 -1.91 -13.12 16 7 C 0.09 2.26 5.31 86.38 0.46 2.72 16 8 N -0.72 -23.46 5.45 -466.16 -2.54 -26.00 16 9 C 0.57 24.31 7.76 86.73 0.67 24.99 16 10 O -0.61 -29.15 16.32 -3.98 -0.06 -29.21 16 11 C -0.30 -13.72 5.89 -19.93 -0.12 -13.84 16 12 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 13 C -0.20 -9.98 8.64 22.47 0.19 -9.78 16 14 C 0.10 5.29 5.58 -21.28 -0.12 5.17 16 15 C -0.47 -24.00 9.04 23.46 0.21 -23.78 16 16 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.71 5.14 85.35 0.44 2.15 16 18 N -0.80 -38.36 10.95 21.87 0.24 -38.12 16 19 Si 0.99 34.92 29.60 68.60 2.03 36.95 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 21 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 22 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 23 C -0.25 -12.73 9.73 22.47 0.22 -12.51 16 24 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.39 5.38 9.05 -74.06 -0.67 4.71 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 12.23 6.47 -92.71 -0.60 11.63 16 36 H 0.12 4.51 6.37 -2.91 -0.02 4.49 16 37 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 38 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 40 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -62.57 337.22 1.05 -61.51 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.22 Total: 38.78 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.52 Total: -30.80 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -2.30 Total: -64.13 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.98 Total: -42.33 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -62.57 1.05 -61.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270432486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.062 kcal (2) G-P(sol) polarization free energy of solvation -62.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds