Wall clock time and date at job start Mon Mar 30 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47331 * 2 1 4 4 H 1.08996 * 109.46926 * 306.35579 * 3 2 1 5 5 C 1.50701 * 109.46946 * 66.34957 * 3 2 1 6 6 O 1.21299 * 119.99711 * 34.99211 * 5 3 2 7 7 N 1.34771 * 120.00383 * 214.98953 * 5 3 2 8 8 C 1.46503 * 119.99488 * 355.49250 * 7 5 3 9 9 C 1.37091 * 120.00319 * 175.49186 * 7 5 3 10 10 H 1.08005 * 120.00214 * 6.95122 * 9 7 5 11 11 C 1.38949 * 120.00086 * 186.95339 * 9 7 5 12 12 N 1.31414 * 120.00011 * 32.08355 * 11 9 7 13 13 Si 1.86798 * 119.99978 * 212.08095 * 11 9 7 14 14 H 1.48504 * 109.47189 * 95.00227 * 13 11 9 15 15 H 1.48506 * 109.47068 * 215.00041 * 13 11 9 16 16 H 1.48493 * 109.47302 * 334.99672 * 13 11 9 17 17 C 1.50693 * 109.46976 * 186.35261 * 3 2 1 18 18 C 1.38269 * 119.94428 * 120.00461 * 17 3 2 19 19 C 1.38145 * 120.05536 * 179.97438 * 18 17 3 20 20 C 1.38729 * 119.94721 * 359.97438 * 19 18 17 21 21 O 1.35893 * 120.05872 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00160 * 179.97438 * 21 20 19 23 23 C 1.38739 * 119.88895 * 359.97438 * 20 19 18 24 24 C 1.38151 * 119.93851 * 0.02562 * 23 20 19 25 25 H 1.08994 * 109.47233 * 184.81783 * 1 2 3 26 26 H 1.09000 * 109.46732 * 304.81659 * 1 2 3 27 27 H 1.08998 * 109.47496 * 64.81108 * 1 2 3 28 28 H 1.09001 * 109.46955 * 240.00396 * 2 1 3 29 29 H 1.08999 * 109.47199 * 120.00632 * 2 1 3 30 30 H 1.08991 * 109.47395 * 94.87986 * 8 7 5 31 31 H 1.09011 * 109.46564 * 214.87815 * 8 7 5 32 32 H 1.09002 * 109.47457 * 334.86973 * 8 7 5 33 33 H 0.97001 * 119.99954 * 180.02562 * 12 11 9 34 34 H 1.08003 * 119.97067 * 0.27253 * 18 17 3 35 35 H 1.08003 * 120.02375 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47348 * 300.00321 * 22 21 20 37 37 H 1.09002 * 109.47265 * 60.00266 * 22 21 20 38 38 H 1.08999 * 109.47188 * 179.97438 * 22 21 20 39 39 H 1.07989 * 120.03107 * 179.97438 * 23 20 19 40 40 H 1.08004 * 119.96735 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5868 1.9881 -0.8276 5 6 1.6701 2.1061 1.3015 6 8 1.6625 1.4625 2.3297 7 7 1.3478 3.4145 1.3231 8 6 1.4522 4.2148 0.1005 9 6 0.9222 3.9965 2.4891 10 1 0.9516 3.4384 3.4134 11 6 0.4530 5.3043 2.4820 12 7 -0.1716 5.7725 1.4248 13 14 0.7099 6.3970 3.9751 14 1 1.9373 7.2116 3.7870 15 1 -0.4607 7.2961 4.1379 16 1 0.8574 5.5522 5.1873 17 6 3.5388 1.4453 -0.1572 18 6 4.1181 2.0836 -1.2383 19 6 5.4918 2.0881 -1.3844 20 6 6.2902 1.4519 -0.4450 21 8 7.6417 1.4544 -0.5868 22 6 8.4008 0.7802 0.4188 23 6 5.7066 0.8130 0.6394 24 6 4.3323 0.8115 0.7810 25 1 -0.3633 -1.0240 0.0863 26 1 -0.3633 0.5868 0.8437 27 1 -0.3634 0.4374 -0.9299 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.4821 4.2491 -0.3953 31 1 1.7663 5.2273 0.3547 32 1 2.1860 3.7638 -0.5675 33 1 -0.4988 6.6857 1.4196 34 1 3.4964 2.5832 -1.9665 35 1 5.9439 2.5872 -2.2288 36 1 8.2072 1.2384 1.3887 37 1 8.1116 -0.2704 0.4491 38 1 9.4627 0.8576 0.1854 39 1 6.3258 0.3168 1.3718 40 1 3.8774 0.3139 1.6248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271695013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:15 Heat of formation + Delta-G solvation = -45.732565 kcal Electronic energy + Delta-G solvation = -21965.751718 eV Core-core repulsion = 18746.150264 eV Total energy + Delta-G solvation = -3219.601454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13522 -38.91244 -37.11516 -34.89112 -33.71527 -31.64776 -30.85034 -30.23839 -27.70101 -26.54841 -25.73549 -24.27414 -22.64434 -21.61275 -21.17026 -18.33322 -17.99510 -16.89337 -16.46411 -15.87102 -15.69137 -15.24903 -14.66523 -14.35824 -14.14137 -13.72876 -13.59281 -13.23842 -13.05160 -12.88338 -12.55663 -12.15326 -11.96057 -11.78260 -11.55810 -11.40414 -11.39407 -11.03064 -10.91801 -10.75361 -10.57188 -10.43784 -10.35842 -10.24028 -10.05185 -8.90447 -8.75722 -8.42704 -7.79985 -7.69736 -6.42253 -3.71052 1.57905 1.66199 3.16373 3.28523 3.33228 3.34254 3.86052 4.02364 4.17373 4.82967 4.94391 5.03711 5.05721 5.09464 5.18322 5.26481 5.38238 5.50667 5.56512 5.64130 5.66976 5.77655 5.90043 6.00116 6.11938 6.26969 6.29486 6.30742 6.42072 6.51029 6.61656 6.68890 6.79751 6.83298 6.96464 6.99567 7.12385 7.51812 7.58959 8.12800 8.50229 9.21770 9.48479 10.04781 10.63820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.005558 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.376729 B = 5036.134074 C = 5859.602950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.061 4.061 4 H 0.085 0.915 5 C 0.453 3.547 6 O -0.591 6.591 7 N -0.441 5.441 8 C 0.105 3.895 9 C -0.319 4.319 10 H 0.105 0.895 11 C 0.038 3.962 12 N -0.858 5.858 13 Si 0.906 3.094 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.268 1.268 17 C -0.095 4.095 18 C -0.078 4.078 19 C -0.153 4.153 20 C 0.114 3.886 21 O -0.322 6.322 22 C 0.029 3.971 23 C -0.207 4.207 24 C -0.061 4.061 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 -7.301 -6.939 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.082 4.082 4 H 0.103 0.897 5 C 0.241 3.759 6 O -0.477 6.477 7 N -0.158 5.158 8 C -0.039 4.039 9 C -0.446 4.446 10 H 0.123 0.877 11 C -0.167 4.167 12 N -0.496 5.496 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.171 4.171 20 C 0.069 3.931 21 O -0.236 6.236 22 C -0.067 4.067 23 C -0.225 4.225 24 C -0.079 4.079 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.317 -7.315 -6.644 14.286 hybrid contribution 0.057 0.765 0.809 1.115 sum 10.374 -6.550 -5.835 13.586 Atomic orbital electron populations 1.21752 0.95699 1.01183 1.02118 1.21333 0.95979 0.94333 1.01848 1.20284 0.91509 0.97834 0.98621 0.89665 1.19598 0.84688 0.82090 0.89527 1.90478 1.59220 1.63507 1.34449 1.43653 1.55781 1.06798 1.09584 1.21572 0.99665 0.96177 0.86504 1.19633 1.41424 0.96051 0.87443 0.87712 1.25123 0.95265 0.98048 0.98233 1.70218 1.31232 1.16929 1.31229 0.86229 0.77967 0.80003 0.82515 1.20433 1.21169 1.19240 1.19610 0.94897 0.99594 0.95449 1.20890 0.93609 0.97798 0.97336 1.20299 0.92723 1.03994 1.00125 1.18994 0.82188 0.96842 0.95069 1.86021 1.15649 1.72986 1.48949 1.22999 0.95672 0.96594 0.91397 1.21193 0.96137 1.05860 0.99358 1.20980 0.92254 0.96674 0.97983 0.93201 0.91734 0.93281 0.92350 0.90906 0.92747 0.91423 0.94692 0.92233 0.85355 0.85525 0.92685 0.92822 0.88612 0.85822 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.81 37.16 0.36 -2.12 16 2 C -0.10 -1.62 4.90 -26.73 -0.13 -1.76 16 3 C -0.06 -1.13 1.56 -92.92 -0.15 -1.28 16 4 H 0.09 1.49 6.20 -51.93 -0.32 1.17 16 5 C 0.45 10.86 5.27 -10.99 -0.06 10.80 16 6 O -0.59 -15.92 15.12 5.54 0.08 -15.83 16 7 N -0.44 -11.32 3.02 -122.19 -0.37 -11.69 16 8 C 0.10 2.36 8.26 59.85 0.49 2.85 16 9 C -0.32 -8.96 9.38 -14.94 -0.14 -9.10 16 10 H 0.11 3.13 7.35 -52.48 -0.39 2.74 16 11 C 0.04 1.02 4.73 -17.47 -0.08 0.94 16 12 N -0.86 -22.80 11.10 55.50 0.62 -22.18 16 13 Si 0.91 20.75 29.65 -169.99 -5.04 15.71 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.09 -1.64 4.61 -104.60 -0.48 -2.12 16 18 C -0.08 -1.19 8.88 -39.60 -0.35 -1.54 16 19 C -0.15 -2.23 9.99 -39.43 -0.39 -2.62 16 20 C 0.11 1.70 6.69 -39.21 -0.26 1.43 16 21 O -0.32 -4.34 10.50 -19.41 -0.20 -4.55 16 22 C 0.03 0.27 9.81 101.05 0.99 1.26 16 23 C -0.21 -3.13 9.04 -39.43 -0.36 -3.48 16 24 C -0.06 -1.05 8.85 -39.60 -0.35 -1.40 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.28 7.22 -51.93 -0.37 0.91 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 30 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 31 H 0.07 1.61 6.78 -51.92 -0.35 1.26 16 32 H 0.03 0.66 5.07 -51.93 -0.26 0.39 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.13 1.68 7.61 -52.48 -0.40 1.28 16 35 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 40 H 0.13 2.42 7.16 -52.48 -0.38 2.04 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -31.19 325.32 -6.54 -37.73 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.62 Total: 4.02 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.90 Total: -8.12 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.25 Total: -33.86 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.12 Total: -20.38 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.04 Total: 15.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.19 -6.54 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271695013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.002 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds