Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47331 * 2 1 4 4 H 1.08996 * 109.46926 * 306.35579 * 3 2 1 5 5 C 1.50701 * 109.46946 * 66.34957 * 3 2 1 6 6 O 1.21299 * 119.99711 * 34.99211 * 5 3 2 7 7 N 1.34771 * 120.00383 * 214.98953 * 5 3 2 8 8 C 1.46503 * 119.99488 * 355.49250 * 7 5 3 9 9 C 1.37091 * 120.00319 * 175.49186 * 7 5 3 10 10 H 1.08005 * 120.00214 * 6.95122 * 9 7 5 11 11 C 1.38949 * 120.00086 * 186.95339 * 9 7 5 12 12 N 1.31414 * 120.00011 * 32.08355 * 11 9 7 13 13 Si 1.86798 * 119.99978 * 212.08095 * 11 9 7 14 14 H 1.48504 * 109.47189 * 95.00227 * 13 11 9 15 15 H 1.48506 * 109.47068 * 215.00041 * 13 11 9 16 16 H 1.48493 * 109.47302 * 334.99672 * 13 11 9 17 17 C 1.50693 * 109.46976 * 186.35261 * 3 2 1 18 18 C 1.38269 * 119.94428 * 120.00461 * 17 3 2 19 19 C 1.38145 * 120.05536 * 179.97438 * 18 17 3 20 20 C 1.38729 * 119.94721 * 359.97438 * 19 18 17 21 21 O 1.35893 * 120.05872 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00160 * 179.97438 * 21 20 19 23 23 C 1.38739 * 119.88895 * 359.97438 * 20 19 18 24 24 C 1.38151 * 119.93851 * 0.02562 * 23 20 19 25 25 H 1.08994 * 109.47233 * 184.81783 * 1 2 3 26 26 H 1.09000 * 109.46732 * 304.81659 * 1 2 3 27 27 H 1.08998 * 109.47496 * 64.81108 * 1 2 3 28 28 H 1.09001 * 109.46955 * 240.00396 * 2 1 3 29 29 H 1.08999 * 109.47199 * 120.00632 * 2 1 3 30 30 H 1.08991 * 109.47395 * 94.87986 * 8 7 5 31 31 H 1.09011 * 109.46564 * 214.87815 * 8 7 5 32 32 H 1.09002 * 109.47457 * 334.86973 * 8 7 5 33 33 H 0.97001 * 119.99954 * 180.02562 * 12 11 9 34 34 H 1.08003 * 119.97067 * 0.27253 * 18 17 3 35 35 H 1.08003 * 120.02375 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47348 * 300.00321 * 22 21 20 37 37 H 1.09002 * 109.47265 * 60.00266 * 22 21 20 38 38 H 1.08999 * 109.47188 * 179.97438 * 22 21 20 39 39 H 1.07989 * 120.03107 * 179.97438 * 23 20 19 40 40 H 1.08004 * 119.96735 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5868 1.9881 -0.8276 5 6 1.6701 2.1061 1.3015 6 8 1.6625 1.4625 2.3297 7 7 1.3478 3.4145 1.3231 8 6 1.4522 4.2148 0.1005 9 6 0.9222 3.9965 2.4891 10 1 0.9516 3.4384 3.4134 11 6 0.4530 5.3043 2.4820 12 7 -0.1716 5.7725 1.4248 13 14 0.7099 6.3970 3.9751 14 1 1.9373 7.2116 3.7870 15 1 -0.4607 7.2961 4.1379 16 1 0.8574 5.5522 5.1873 17 6 3.5388 1.4453 -0.1572 18 6 4.1181 2.0836 -1.2383 19 6 5.4918 2.0881 -1.3844 20 6 6.2902 1.4519 -0.4450 21 8 7.6417 1.4544 -0.5868 22 6 8.4008 0.7802 0.4188 23 6 5.7066 0.8130 0.6394 24 6 4.3323 0.8115 0.7810 25 1 -0.3633 -1.0240 0.0863 26 1 -0.3633 0.5868 0.8437 27 1 -0.3634 0.4374 -0.9299 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.4821 4.2491 -0.3953 31 1 1.7663 5.2273 0.3547 32 1 2.1860 3.7638 -0.5675 33 1 -0.4988 6.6857 1.4196 34 1 3.4964 2.5832 -1.9665 35 1 5.9439 2.5872 -2.2288 36 1 8.2072 1.2384 1.3887 37 1 8.1116 -0.2704 0.4491 38 1 9.4627 0.8576 0.1854 39 1 6.3258 0.3168 1.3718 40 1 3.8774 0.3139 1.6248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271695013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -64.138967 kcal Electronic energy + Delta-G solvation = -21966.549880 eV Core-core repulsion = 18746.150264 eV Total energy + Delta-G solvation = -3220.399616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41228 -40.43171 -38.42997 -36.76264 -35.25492 -33.64844 -32.02234 -31.49487 -28.82146 -28.21810 -27.22409 -26.06037 -23.86087 -23.01452 -22.51319 -19.99969 -19.08139 -18.88648 -18.10748 -17.17463 -16.70108 -16.62497 -16.44822 -15.98900 -15.66760 -15.24756 -14.78177 -14.65535 -14.47640 -14.38318 -13.71374 -13.60994 -13.40654 -13.26505 -13.24280 -13.14630 -12.77752 -12.65532 -12.34277 -12.19384 -12.11143 -11.98663 -11.84359 -11.71598 -11.51042 -10.91060 -10.27361 -9.92704 -9.76461 -9.00923 -8.44557 -5.81995 0.40140 0.43617 1.32371 1.40115 1.51665 2.04765 2.27457 2.39473 2.76574 3.00746 3.16203 3.82232 3.85297 3.95506 4.05559 4.13234 4.32663 4.35611 4.39216 4.46928 4.48649 4.54677 4.63972 4.71307 4.77574 4.77973 4.93968 4.98950 5.07860 5.11983 5.26084 5.31135 5.32475 5.40292 5.44010 5.49403 5.72795 5.80072 6.07677 6.45432 6.48971 7.19849 7.52841 8.10876 8.60459 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.005558 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.376729 B = 5036.134074 C = 5859.602950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.049 4.049 4 H 0.100 0.900 5 C 0.450 3.550 6 O -0.631 6.631 7 N -0.460 5.460 8 C 0.115 3.885 9 C -0.360 4.360 10 H 0.071 0.929 11 C 0.012 3.988 12 N -0.872 5.872 13 Si 0.968 3.032 14 H -0.268 1.268 15 H -0.272 1.272 16 H -0.277 1.277 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.154 4.154 20 C 0.114 3.886 21 O -0.330 6.330 22 C 0.018 3.982 23 C -0.210 4.210 24 C -0.079 4.079 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.276 0.724 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -6.904 -8.780 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.071 4.071 4 H 0.118 0.882 5 C 0.240 3.760 6 O -0.519 6.519 7 N -0.178 5.178 8 C -0.028 4.028 9 C -0.487 4.487 10 H 0.089 0.911 11 C -0.193 4.193 12 N -0.509 5.509 13 Si 0.792 3.208 14 H -0.194 1.194 15 H -0.197 1.197 16 H -0.202 1.202 17 C -0.116 4.116 18 C -0.092 4.092 19 C -0.172 4.172 20 C 0.069 3.931 21 O -0.244 6.244 22 C -0.076 4.076 23 C -0.228 4.228 24 C -0.097 4.097 25 H 0.090 0.910 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.847 -6.911 -8.508 16.140 hybrid contribution -0.335 0.574 1.387 1.538 sum 11.512 -6.337 -7.121 14.946 Atomic orbital electron populations 1.21728 0.95651 1.01959 1.01054 1.21354 0.95955 0.93342 1.02534 1.20209 0.93053 0.98344 0.95469 0.88154 1.20592 0.82815 0.81548 0.91084 1.90438 1.60360 1.64391 1.36701 1.43882 1.56197 1.07835 1.09859 1.21515 1.00216 0.95284 0.85765 1.19465 1.44244 0.97344 0.87667 0.91111 1.25775 0.94205 0.98206 1.01088 1.70235 1.30674 1.17465 1.32479 0.85319 0.78467 0.78102 0.78876 1.19372 1.19736 1.20235 1.19552 0.93760 1.01420 0.96897 1.21117 0.94301 0.96936 0.96881 1.20629 0.92509 1.03472 1.00629 1.19171 0.83140 0.96090 0.94689 1.86022 1.14831 1.73345 1.50228 1.23320 0.96694 0.96885 0.90714 1.21340 0.95394 1.05963 1.00119 1.20913 0.93404 0.97636 0.97781 0.90970 0.96165 0.91420 0.88888 0.92845 0.93509 0.93084 0.91034 0.91454 0.82915 0.83103 0.92613 0.91771 0.85833 0.84025 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 9.81 71.98 0.71 -4.08 16 2 C -0.09 -3.10 4.90 30.59 0.15 -2.95 16 3 C -0.05 -1.82 1.56 -12.29 -0.02 -1.84 16 4 H 0.10 3.34 6.20 -2.39 -0.01 3.32 16 5 C 0.45 22.28 5.27 87.66 0.46 22.74 16 6 O -0.63 -35.98 15.12 -3.09 -0.05 -36.02 16 7 N -0.46 -24.28 3.02 -658.88 -1.99 -26.27 16 8 C 0.12 5.16 8.26 127.77 1.06 6.22 16 9 C -0.36 -21.07 9.38 84.04 0.79 -20.28 16 10 H 0.07 4.52 7.35 -2.91 -0.02 4.50 16 11 C 0.01 0.63 4.73 84.93 0.40 1.03 16 12 N -0.87 -46.31 11.10 21.66 0.24 -46.06 16 13 Si 0.97 42.99 29.65 68.60 2.03 45.02 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 17 C -0.12 -3.88 4.61 -19.85 -0.09 -3.97 16 18 C -0.07 -2.06 8.88 22.26 0.20 -1.86 16 19 C -0.15 -4.02 9.99 22.37 0.22 -3.80 16 20 C 0.11 3.15 6.69 22.51 0.15 3.30 16 21 O -0.33 -8.01 10.50 -92.35 -0.97 -8.98 16 22 C 0.02 0.30 9.81 113.37 1.11 1.41 16 23 C -0.21 -6.11 9.04 22.37 0.20 -5.91 16 24 C -0.08 -2.73 8.85 22.26 0.20 -2.54 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.02 0.81 7.22 -2.39 -0.02 0.79 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.05 1.96 7.11 -2.39 -0.02 1.94 16 30 H 0.05 2.13 7.79 -2.39 -0.02 2.11 16 31 H 0.05 2.42 6.78 -2.38 -0.02 2.40 16 32 H 0.07 2.59 5.07 -2.39 -0.01 2.58 16 33 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.15 3.39 7.61 -2.91 -0.02 3.37 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 37 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.14 3.44 6.30 -2.92 -0.02 3.42 16 40 H 0.11 4.22 7.16 -2.91 -0.02 4.20 16 Total: -1.00 -70.12 325.32 5.84 -64.29 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.03 Total: 20.55 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.54 Total: -12.53 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.75 Total: -72.33 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.02 Total: -45.00 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -70.12 5.84 -64.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271695013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.149 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds