Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.08999 * 109.46529 * 304.99589 * 3 2 1 5 5 C 1.50697 * 109.46977 * 185.00079 * 3 2 1 6 6 O 1.21291 * 120.00071 * 240.00260 * 5 3 2 7 7 N 1.34773 * 120.00116 * 59.99602 * 5 3 2 8 8 C 1.46503 * 120.00071 * 359.97438 * 7 5 3 9 9 C 1.37103 * 119.99897 * 179.72702 * 7 5 3 10 10 H 1.08002 * 119.99968 * 331.67774 * 9 7 5 11 11 C 1.38949 * 119.99734 * 151.68363 * 9 7 5 12 12 N 1.31407 * 120.00487 * 349.52733 * 11 9 7 13 13 Si 1.86806 * 119.99840 * 169.53373 * 11 9 7 14 14 H 1.48503 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47275 * 119.99223 * 13 11 9 16 16 H 1.48496 * 109.47163 * 239.99751 * 13 11 9 17 17 C 1.50695 * 109.47184 * 64.99658 * 3 2 1 18 18 C 1.38274 * 119.94062 * 59.73171 * 17 3 2 19 19 C 1.38150 * 120.04921 * 179.72595 * 18 17 3 20 20 C 1.38729 * 119.94704 * 0.53806 * 19 18 17 21 21 O 1.35896 * 120.05858 * 179.74931 * 20 19 18 22 22 C 1.42900 * 116.99803 * 359.97438 * 21 20 19 23 23 C 1.38732 * 119.89034 * 359.73404 * 20 19 18 24 24 C 1.38148 * 119.94102 * 359.97438 * 23 20 19 25 25 H 1.09010 * 109.47209 * 300.00296 * 1 2 3 26 26 H 1.08995 * 109.47352 * 59.99881 * 1 2 3 27 27 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46978 * 239.99645 * 2 1 3 29 29 H 1.08997 * 109.46922 * 119.99813 * 2 1 3 30 30 H 1.08992 * 109.47601 * 264.09568 * 8 7 5 31 31 H 1.08995 * 109.46791 * 24.10062 * 8 7 5 32 32 H 1.08998 * 109.47066 * 144.09415 * 8 7 5 33 33 H 0.96999 * 120.00474 * 180.02562 * 12 11 9 34 34 H 1.07990 * 119.97280 * 359.97438 * 18 17 3 35 35 H 1.08002 * 120.02464 * 180.27160 * 19 18 17 36 36 H 1.09002 * 109.47160 * 300.00021 * 22 21 20 37 37 H 1.09001 * 109.47435 * 59.99866 * 22 21 20 38 38 H 1.08999 * 109.47441 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.03258 * 179.97438 * 23 20 19 40 40 H 1.08002 * 119.97431 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 8 4.2217 1.9436 0.7478 7 7 4.1297 0.8911 -1.2031 8 6 3.3087 0.2875 -2.2556 9 6 5.4959 0.8977 -1.3184 10 1 6.0732 1.6830 -0.8531 11 6 6.1375 -0.1058 -2.0340 12 7 5.4669 -1.1664 -2.4240 13 14 7.9537 0.0528 -2.4414 14 1 8.4740 1.3313 -1.8937 15 1 8.6971 -1.0831 -1.8395 16 1 8.1335 0.0367 -3.9154 17 6 1.6412 2.1163 1.2876 18 6 2.0729 1.6038 2.4971 19 6 1.7133 2.2229 3.6786 20 6 0.9094 3.3532 3.6515 21 8 0.5502 3.9611 4.8126 22 6 1.0360 3.3820 6.0253 23 6 0.4731 3.8622 2.4369 24 6 0.8403 3.2429 1.2578 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2338 -0.7867 -2.0870 31 1 2.3121 0.7286 -2.2369 32 1 3.7692 0.4716 -3.2262 33 1 5.9149 -1.8671 -2.9232 34 1 2.6948 0.7212 2.5180 35 1 2.0543 1.8248 4.6229 36 1 0.6759 2.3565 6.1080 37 1 2.1260 3.3848 6.0182 38 1 0.6770 3.9631 6.8748 39 1 -0.1531 4.7417 2.4131 40 1 0.5013 3.6390 0.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271695016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -42.566073 kcal Electronic energy + Delta-G solvation = -21882.970422 eV Core-core repulsion = 18663.506277 eV Total energy + Delta-G solvation = -3219.464145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08971 -38.91847 -37.10600 -34.60481 -34.23787 -31.46776 -30.75120 -29.88364 -27.71440 -26.73104 -25.86036 -24.11431 -22.71933 -21.70565 -20.71364 -18.73277 -17.92915 -16.84541 -16.45376 -15.65159 -15.54246 -15.18248 -14.60035 -14.35968 -14.10819 -13.84476 -13.74919 -13.42016 -12.99419 -12.84435 -12.36997 -12.14060 -11.94386 -11.80961 -11.56564 -11.34789 -11.25663 -11.13578 -10.88855 -10.82697 -10.65810 -10.35779 -10.32505 -10.17190 -10.02043 -8.99683 -8.67605 -8.25844 -7.73808 -7.56477 -6.26830 -3.89074 1.68732 1.78651 3.16828 3.26812 3.33718 3.39868 3.92822 4.05326 4.21795 4.90287 4.99861 5.12321 5.13232 5.14194 5.17521 5.24603 5.42711 5.47873 5.51923 5.63668 5.72538 5.76401 5.86557 6.01686 6.07952 6.18300 6.31169 6.32059 6.39090 6.49738 6.60137 6.62389 6.73965 6.86313 7.04764 7.10538 7.22969 7.59780 7.59855 8.21363 8.53440 9.23469 9.45997 10.03931 10.76572 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.004605 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.987299 B = 6078.297711 C = 6718.974612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.060 4.060 4 H 0.086 0.914 5 C 0.457 3.543 6 O -0.579 6.579 7 N -0.447 5.447 8 C 0.106 3.894 9 C -0.305 4.305 10 H 0.095 0.905 11 C 0.033 3.967 12 N -0.884 5.884 13 Si 0.923 3.077 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.075 4.075 18 C -0.041 4.041 19 C -0.208 4.208 20 C 0.112 3.888 21 O -0.323 6.323 22 C 0.029 3.971 23 C -0.156 4.156 24 C -0.081 4.081 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 3.312 7.131 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.081 4.081 4 H 0.105 0.895 5 C 0.244 3.756 6 O -0.463 6.463 7 N -0.167 5.167 8 C -0.037 4.037 9 C -0.433 4.433 10 H 0.112 0.888 11 C -0.170 4.170 12 N -0.523 5.523 13 Si 0.750 3.250 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.075 4.075 18 C -0.059 4.059 19 C -0.227 4.227 20 C 0.067 3.933 21 O -0.237 6.237 22 C -0.066 4.066 23 C -0.175 4.175 24 C -0.099 4.099 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.245 3.545 7.459 13.952 hybrid contribution 1.121 -0.325 -0.246 1.193 sum -10.124 3.220 7.213 12.841 Atomic orbital electron populations 1.21765 0.95905 1.01132 1.01598 1.21803 0.95528 0.94851 1.04027 1.20216 0.95549 0.96994 0.95372 0.89549 1.19975 0.88395 0.84436 0.82785 1.90532 1.65082 1.49955 1.40718 1.43479 1.06286 1.50739 1.16150 1.21663 0.91478 0.98723 0.91868 1.19619 0.81129 1.09390 1.33152 0.88770 1.25354 0.99894 0.94177 0.97601 1.69940 1.36792 1.07559 1.38023 0.85910 0.82605 0.78512 0.77959 1.19298 1.20781 1.20737 1.19332 0.97943 0.95971 0.94296 1.20736 0.95283 0.98862 0.90986 1.21142 1.03901 0.98312 0.99326 1.18948 0.95849 0.92626 0.85835 1.86009 1.71275 1.53507 1.12944 1.22982 0.99651 0.99066 0.84920 1.20230 1.05209 1.02382 0.89683 1.20794 0.97217 0.94658 0.97194 0.92858 0.92915 0.93004 0.89440 0.91863 0.91323 0.94923 0.92584 0.92424 0.85945 0.86015 0.92874 0.92723 0.88709 0.85792 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.73 37.16 0.36 -1.57 16 2 C -0.12 -2.06 4.89 -26.73 -0.13 -2.19 16 3 C -0.06 -1.10 1.56 -92.93 -0.15 -1.25 16 4 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 5 C 0.46 11.06 6.90 -10.99 -0.08 10.98 16 6 O -0.58 -16.05 14.88 5.55 0.08 -15.97 16 7 N -0.45 -11.36 3.00 -122.20 -0.37 -11.73 16 8 C 0.11 2.32 7.09 59.85 0.42 2.74 16 9 C -0.30 -8.52 9.16 -14.93 -0.14 -8.66 16 10 H 0.09 2.78 7.52 -52.49 -0.39 2.38 16 11 C 0.03 0.87 5.16 -17.47 -0.09 0.78 16 12 N -0.88 -23.49 10.91 55.50 0.61 -22.89 16 13 Si 0.92 20.91 29.57 -169.99 -5.03 15.88 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 C -0.07 -1.33 3.38 -104.60 -0.35 -1.68 16 18 C -0.04 -0.73 7.87 -39.60 -0.31 -1.04 16 19 C -0.21 -3.30 9.04 -39.43 -0.36 -3.66 16 20 C 0.11 1.73 6.69 -39.22 -0.26 1.47 16 21 O -0.32 -4.51 10.50 -19.41 -0.20 -4.71 16 22 C 0.03 0.29 9.81 101.05 0.99 1.28 16 23 C -0.16 -2.35 9.99 -39.43 -0.39 -2.75 16 24 C -0.08 -1.26 9.66 -39.60 -0.38 -1.64 16 25 H 0.05 0.70 7.38 -51.92 -0.38 0.32 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.52 4.56 -51.93 -0.24 1.28 16 29 H 0.06 1.09 7.20 -51.93 -0.37 0.72 16 30 H 0.07 1.56 6.30 -51.93 -0.33 1.23 16 31 H 0.03 0.58 5.62 -51.93 -0.29 0.29 16 32 H 0.06 1.27 7.68 -51.93 -0.40 0.88 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.12 2.32 7.48 -52.49 -0.39 1.92 16 35 H 0.12 1.65 6.30 -52.49 -0.33 1.31 16 36 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 1.65 7.94 -52.49 -0.42 1.23 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -31.70 322.35 -6.45 -38.15 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.54 Total: 3.58 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.86 Total: -7.18 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.24 Total: -34.62 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.12 Total: -20.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.70 -6.45 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271695016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.414 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds