Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.08999 * 109.46529 * 304.99589 * 3 2 1 5 5 C 1.50697 * 109.46977 * 185.00079 * 3 2 1 6 6 O 1.21291 * 120.00071 * 240.00260 * 5 3 2 7 7 N 1.34773 * 120.00116 * 59.99602 * 5 3 2 8 8 C 1.46503 * 120.00071 * 359.97438 * 7 5 3 9 9 C 1.37103 * 119.99897 * 179.72702 * 7 5 3 10 10 H 1.08002 * 119.99968 * 331.67774 * 9 7 5 11 11 C 1.38949 * 119.99734 * 151.68363 * 9 7 5 12 12 N 1.31407 * 120.00487 * 349.52733 * 11 9 7 13 13 Si 1.86806 * 119.99840 * 169.53373 * 11 9 7 14 14 H 1.48503 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47275 * 119.99223 * 13 11 9 16 16 H 1.48496 * 109.47163 * 239.99751 * 13 11 9 17 17 C 1.50695 * 109.47184 * 64.99658 * 3 2 1 18 18 C 1.38274 * 119.94062 * 59.73171 * 17 3 2 19 19 C 1.38150 * 120.04921 * 179.72595 * 18 17 3 20 20 C 1.38729 * 119.94704 * 0.53806 * 19 18 17 21 21 O 1.35896 * 120.05858 * 179.74931 * 20 19 18 22 22 C 1.42900 * 116.99803 * 359.97438 * 21 20 19 23 23 C 1.38732 * 119.89034 * 359.73404 * 20 19 18 24 24 C 1.38148 * 119.94102 * 359.97438 * 23 20 19 25 25 H 1.09010 * 109.47209 * 300.00296 * 1 2 3 26 26 H 1.08995 * 109.47352 * 59.99881 * 1 2 3 27 27 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46978 * 239.99645 * 2 1 3 29 29 H 1.08997 * 109.46922 * 119.99813 * 2 1 3 30 30 H 1.08992 * 109.47601 * 264.09568 * 8 7 5 31 31 H 1.08995 * 109.46791 * 24.10062 * 8 7 5 32 32 H 1.08998 * 109.47066 * 144.09415 * 8 7 5 33 33 H 0.96999 * 120.00474 * 180.02562 * 12 11 9 34 34 H 1.07990 * 119.97280 * 359.97438 * 18 17 3 35 35 H 1.08002 * 120.02464 * 180.27160 * 19 18 17 36 36 H 1.09002 * 109.47160 * 300.00021 * 22 21 20 37 37 H 1.09001 * 109.47435 * 59.99866 * 22 21 20 38 38 H 1.08999 * 109.47441 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.03258 * 179.97438 * 23 20 19 40 40 H 1.08002 * 119.97431 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 8 4.2217 1.9436 0.7478 7 7 4.1297 0.8911 -1.2031 8 6 3.3087 0.2875 -2.2556 9 6 5.4959 0.8977 -1.3184 10 1 6.0732 1.6830 -0.8531 11 6 6.1375 -0.1058 -2.0340 12 7 5.4669 -1.1664 -2.4240 13 14 7.9537 0.0528 -2.4414 14 1 8.4740 1.3313 -1.8937 15 1 8.6971 -1.0831 -1.8395 16 1 8.1335 0.0367 -3.9154 17 6 1.6412 2.1163 1.2876 18 6 2.0729 1.6038 2.4971 19 6 1.7133 2.2229 3.6786 20 6 0.9094 3.3532 3.6515 21 8 0.5502 3.9611 4.8126 22 6 1.0360 3.3820 6.0253 23 6 0.4731 3.8622 2.4369 24 6 0.8403 3.2429 1.2578 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2338 -0.7867 -2.0870 31 1 2.3121 0.7286 -2.2369 32 1 3.7692 0.4716 -3.2262 33 1 5.9149 -1.8671 -2.9232 34 1 2.6948 0.7212 2.5180 35 1 2.0543 1.8248 4.6229 36 1 0.6759 2.3565 6.1080 37 1 2.1260 3.3848 6.0182 38 1 0.6770 3.9631 6.8748 39 1 -0.1531 4.7417 2.4131 40 1 0.5013 3.6390 0.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271695016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = -61.462135 kcal Electronic energy + Delta-G solvation = -21883.789817 eV Core-core repulsion = 18663.506277 eV Total energy + Delta-G solvation = -3220.283540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41409 -40.43335 -38.45757 -36.58488 -35.63641 -33.44960 -31.97024 -31.07835 -28.94740 -28.23665 -27.38696 -25.93663 -23.95960 -22.89161 -22.20191 -20.38938 -19.05185 -18.85945 -18.00896 -17.00465 -16.71667 -16.56997 -16.36923 -15.85192 -15.66018 -15.43677 -15.10771 -14.57796 -14.51517 -14.17521 -13.73383 -13.48872 -13.41062 -13.17658 -13.07020 -12.86027 -12.77932 -12.64062 -12.54491 -12.19157 -12.13493 -12.02407 -11.80719 -11.53659 -11.42539 -10.97728 -10.23209 -9.84134 -9.57536 -8.97652 -8.29495 -6.00690 0.46370 0.52171 1.35558 1.39942 1.53378 2.07078 2.28813 2.41440 2.79903 3.08955 3.23326 3.77410 3.85125 3.98082 4.09324 4.19930 4.29426 4.37002 4.38833 4.46516 4.56918 4.61996 4.68631 4.72456 4.76117 4.80772 4.94955 5.05856 5.14787 5.18874 5.26024 5.36630 5.40280 5.44092 5.46458 5.53513 5.80697 5.85243 6.15823 6.48169 6.53746 7.20809 7.50707 8.08776 8.71618 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.004605 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.987299 B = 6078.297711 C = 6718.974612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C -0.047 4.047 4 H 0.110 0.890 5 C 0.447 3.553 6 O -0.624 6.624 7 N -0.463 5.463 8 C 0.117 3.883 9 C -0.343 4.343 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.896 5.896 13 Si 0.985 3.015 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.095 4.095 18 C -0.062 4.062 19 C -0.214 4.214 20 C 0.111 3.889 21 O -0.331 6.331 22 C 0.019 3.981 23 C -0.158 4.158 24 C -0.078 4.078 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.272 0.728 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 3.860 6.990 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.068 4.068 4 H 0.128 0.872 5 C 0.236 3.764 6 O -0.511 6.511 7 N -0.182 5.182 8 C -0.025 4.025 9 C -0.471 4.471 10 H 0.083 0.917 11 C -0.201 4.201 12 N -0.535 5.535 13 Si 0.809 3.191 14 H -0.201 1.201 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.096 4.096 18 C -0.080 4.080 19 C -0.232 4.232 20 C 0.066 3.934 21 O -0.245 6.245 22 C -0.075 4.075 23 C -0.176 4.176 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.167 0.833 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.954 4.073 7.305 15.419 hybrid contribution 1.637 -0.478 -0.077 1.707 sum -11.317 3.595 7.229 13.901 Atomic orbital electron populations 1.21685 0.92698 1.02423 1.02527 1.21749 0.98167 0.93168 1.02634 1.20149 0.90952 0.98748 0.96952 0.87225 1.21026 0.90960 0.82751 0.81651 1.90485 1.66935 1.51526 1.42127 1.43740 1.05943 1.51111 1.17416 1.21622 0.92719 0.98130 0.90059 1.19544 0.82793 1.09831 1.34930 0.91745 1.26055 1.03776 0.93502 0.96755 1.70007 1.38203 1.07652 1.37605 0.85006 0.77631 0.78028 0.78445 1.20075 1.20217 1.18931 1.19362 0.99459 0.97265 0.93527 1.20680 0.96095 0.98894 0.92365 1.21287 1.04033 0.98608 0.99316 1.19124 0.95207 0.92196 0.86909 1.86008 1.71304 1.53757 1.13423 1.23298 0.99815 1.00253 0.84158 1.20580 1.04919 1.02845 0.89284 1.21066 0.96282 0.93509 0.98743 0.92814 0.91006 0.91590 0.90386 0.93725 0.92468 0.90858 0.94023 0.91816 0.88424 0.84423 0.91885 0.92831 0.85760 0.83292 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.73 71.98 0.70 -2.55 16 2 C -0.12 -3.88 4.89 30.60 0.15 -3.73 16 3 C -0.05 -1.71 1.56 -12.29 -0.02 -1.73 16 4 H 0.11 3.45 7.15 -2.39 -0.02 3.43 16 5 C 0.45 22.24 6.90 87.66 0.60 22.85 16 6 O -0.62 -36.22 14.88 -3.06 -0.05 -36.27 16 7 N -0.46 -24.15 3.00 -658.91 -1.98 -26.13 16 8 C 0.12 5.12 7.09 127.77 0.91 6.03 16 9 C -0.34 -19.87 9.16 84.04 0.77 -19.10 16 10 H 0.06 4.03 7.52 -2.91 -0.02 4.00 16 11 C 0.00 0.05 5.16 84.93 0.44 0.49 16 12 N -0.90 -47.85 10.91 21.66 0.24 -47.62 16 13 Si 0.98 43.27 29.57 68.60 2.03 45.30 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 17 C -0.10 -3.34 3.38 -19.85 -0.07 -3.41 16 18 C -0.06 -2.28 7.87 22.26 0.18 -2.10 16 19 C -0.21 -6.73 9.04 22.37 0.20 -6.53 16 20 C 0.11 3.26 6.69 22.51 0.15 3.41 16 21 O -0.33 -8.52 10.50 -92.38 -0.97 -9.49 16 22 C 0.02 0.34 9.81 113.37 1.11 1.45 16 23 C -0.16 -4.38 9.99 22.37 0.22 -4.16 16 24 C -0.08 -2.28 9.66 22.25 0.22 -2.06 16 25 H 0.05 1.30 7.38 -2.38 -0.02 1.28 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 2.66 4.56 -2.39 -0.01 2.65 16 29 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 30 H 0.06 2.61 6.30 -2.39 -0.02 2.60 16 31 H 0.07 2.53 5.62 -2.39 -0.01 2.51 16 32 H 0.04 1.89 7.68 -2.39 -0.02 1.88 16 33 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 34 H 0.10 3.96 7.48 -2.92 -0.02 3.94 16 35 H 0.14 3.69 6.30 -2.91 -0.02 3.67 16 36 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 37 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 3.48 7.94 -2.91 -0.02 3.46 16 Total: -1.00 -70.89 322.35 5.87 -65.01 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.04 Total: 20.34 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.56 Total: -11.15 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.74 Total: -73.74 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.02 Total: -45.76 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.89 5.87 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271695016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -70.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds