Wall clock time and date at job start Mon Mar 30 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47362 * 2 1 4 4 C 1.53002 * 109.47233 * 239.99851 * 2 1 3 5 5 C 1.52997 * 109.47025 * 59.99829 * 4 2 1 6 6 O 1.42898 * 109.46867 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46847 * 119.99929 * 2 1 3 8 8 C 1.34776 * 120.00191 * 299.99385 * 7 2 1 9 9 O 1.21582 * 120.00138 * 0.02562 * 8 7 2 10 10 C 1.47644 * 120.00302 * 180.02562 * 8 7 2 11 11 C 1.40010 * 119.89525 * 180.02562 * 10 8 7 12 12 C 1.36318 * 120.10475 * 180.25163 * 11 10 8 13 13 C 1.40896 * 119.89127 * 359.52661 * 12 11 10 14 14 C 1.41105 * 120.10198 * 180.22988 * 13 12 11 15 15 H 1.08001 * 120.00056 * 204.79556 * 14 13 12 16 16 C 1.40223 * 120.00499 * 24.78776 * 14 13 12 17 17 N 1.30654 * 119.99604 * 17.72846 * 16 14 13 18 18 Si 1.86796 * 120.00554 * 197.72576 * 16 14 13 19 19 H 1.48504 * 109.47116 * 89.99790 * 18 16 14 20 20 H 1.48499 * 109.47678 * 210.00303 * 18 16 14 21 21 H 1.48502 * 109.47123 * 330.00406 * 18 16 14 22 22 C 1.40884 * 119.79293 * 0.49186 * 13 12 11 23 23 C 1.36316 * 119.88998 * 359.73808 * 22 13 12 24 24 H 1.08998 * 109.46768 * 300.00344 * 1 2 3 25 25 H 1.09000 * 109.46573 * 60.00315 * 1 2 3 26 26 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47823 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47152 * 299.99858 * 3 2 1 29 29 H 1.09004 * 109.47583 * 59.99650 * 3 2 1 30 30 H 1.09002 * 109.47144 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.46929 * 300.00300 * 4 2 1 32 32 H 1.09002 * 109.47599 * 300.00260 * 5 4 2 33 33 H 1.08999 * 109.46882 * 60.00442 * 5 4 2 34 34 H 0.96707 * 114.00094 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00227 * 120.00101 * 7 2 1 36 36 H 1.07997 * 119.94878 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.05610 * 179.71795 * 12 11 10 38 38 H 0.97000 * 119.99671 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.05779 * 179.70908 * 22 13 12 40 40 H 1.08006 * 119.94731 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -0.0001 -2.4985 6 8 2.0059 -0.6741 -3.6652 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9935 0.7583 2.5319 10 6 2.1853 -0.9257 3.6258 11 6 1.8453 -0.4457 4.8964 12 6 2.3020 -1.0816 6.0123 13 6 3.1090 -2.2296 5.8856 14 6 3.5801 -2.8942 7.0378 15 1 4.4790 -3.4906 6.9875 16 6 2.8812 -2.7801 8.2481 17 7 1.6418 -2.3668 8.2502 18 14 3.7221 -3.2192 9.8573 19 1 4.3862 -2.0132 10.4139 20 1 2.7113 -3.7184 10.8240 21 1 4.7373 -4.2751 9.6132 22 6 3.4488 -2.7086 4.6050 23 6 2.9913 -2.0631 3.4949 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 0.4400 0.0000 -2.4985 33 1 1.8934 1.0275 -2.4985 34 1 1.7209 -0.2704 -4.4964 35 1 2.5760 -1.4793 1.1073 36 1 1.2241 0.4324 4.9925 37 1 2.0430 -0.7080 6.9920 38 1 1.1582 -2.2882 9.0874 39 1 4.0710 -3.5853 4.5029 40 1 3.2515 -2.4293 2.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272129593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:36 Heat of formation + Delta-G solvation = -83.925543 kcal Electronic energy + Delta-G solvation = -21130.493115 eV Core-core repulsion = 17909.235489 eV Total energy + Delta-G solvation = -3221.257626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74377 -37.84467 -37.02018 -35.64051 -33.88905 -32.06229 -30.04800 -29.43656 -28.57606 -27.16510 -25.91427 -24.03173 -21.96703 -20.97434 -19.67405 -19.01724 -17.92825 -17.48412 -16.71567 -15.55740 -15.52570 -15.29192 -14.34766 -14.30702 -13.99411 -13.60139 -13.44712 -13.37363 -13.06919 -12.76592 -12.22715 -12.11629 -11.94262 -11.81624 -11.53067 -11.42528 -11.30595 -11.24395 -11.04723 -10.91118 -10.75233 -10.60864 -10.05721 -10.02126 -9.52574 -9.33330 -8.77930 -8.58640 -7.68994 -7.55683 -7.01235 -4.59496 2.24896 2.92280 2.96513 2.99001 3.04348 3.57614 3.75016 3.88763 4.14635 4.57534 4.79426 4.93340 4.99849 5.22048 5.25866 5.36237 5.58796 5.74547 5.76703 5.84641 5.86261 5.98067 6.01230 6.10198 6.18306 6.30081 6.51128 6.55682 6.81342 6.85253 7.04316 7.08122 7.12583 7.38446 7.44785 7.62952 7.80551 7.89052 8.06536 8.29014 8.44190 8.64004 8.76569 9.11649 9.90730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.003299 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.329644 B = 8484.609285 C = 8852.992357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.181 3.819 3 C -0.166 4.166 4 C -0.122 4.122 5 C 0.077 3.923 6 O -0.577 6.577 7 N -0.736 5.736 8 C 0.576 3.424 9 O -0.569 6.569 10 C -0.284 4.284 11 C -0.036 4.036 12 C -0.183 4.183 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.235 4.235 23 C -0.050 4.050 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.379 0.621 35 H 0.395 0.605 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 2.630 -13.248 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.094 3.906 3 C -0.224 4.224 4 C -0.160 4.160 5 C -0.001 4.001 6 O -0.382 6.382 7 N -0.389 5.389 8 C 0.371 3.629 9 O -0.451 6.451 10 C -0.288 4.288 11 C -0.055 4.055 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.393 5.393 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.255 4.255 23 C -0.069 4.069 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.231 0.769 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.369 2.976 -12.559 12.912 hybrid contribution 0.275 -0.336 0.254 0.503 sum -0.094 2.640 -12.305 12.586 Atomic orbital electron populations 1.22313 0.94675 1.02190 1.03244 1.20004 0.94144 0.92322 0.84098 1.22309 1.00930 0.95902 1.03246 1.21716 1.01936 1.00222 0.92158 1.22278 0.97736 0.95142 0.84958 1.86464 1.77789 1.57680 1.16261 1.46026 1.55397 1.32447 1.04997 1.18512 0.78506 0.83121 0.82771 1.90564 1.39986 1.27546 1.86954 1.18941 1.14149 1.03718 0.92024 1.20472 0.96150 0.97402 0.91474 1.21018 1.04557 0.97172 0.97487 1.17782 0.88235 0.89550 0.91922 1.19842 1.08993 1.25343 0.92981 0.89760 1.26107 0.94157 0.92858 1.01669 1.69754 1.08379 1.31183 1.29946 0.86206 0.80052 0.79983 0.80000 1.18920 1.20015 1.18320 1.20667 1.09568 1.02605 0.92642 1.20373 0.95751 0.94109 0.96646 0.89819 0.92492 0.92787 0.92812 0.92497 0.89825 0.90689 0.90679 0.93053 0.93059 0.77488 0.76950 0.88198 0.86201 0.90179 0.88537 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.05 37.16 0.30 -2.01 16 2 C 0.18 2.49 0.83 -131.82 -0.11 2.38 16 3 C -0.17 -2.27 8.05 37.15 0.30 -1.98 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 5 C 0.08 0.74 6.34 37.16 0.24 0.97 16 6 O -0.58 -5.63 13.66 -35.23 -0.48 -6.11 16 7 N -0.74 -12.03 5.05 -48.60 -0.25 -12.27 16 8 C 0.58 11.91 7.18 -12.42 -0.09 11.82 16 9 O -0.57 -12.87 12.53 5.29 0.07 -12.80 16 10 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 11 C -0.04 -0.87 9.52 -39.61 -0.38 -1.25 16 12 C -0.18 -4.69 8.63 -39.27 -0.34 -5.02 16 13 C 0.13 3.27 5.57 -106.80 -0.60 2.68 16 14 C -0.44 -11.07 9.04 -37.75 -0.34 -11.41 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 17 N -0.77 -18.88 10.95 55.56 0.61 -18.27 16 18 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 C -0.24 -5.46 9.73 -39.27 -0.38 -5.84 16 23 C -0.05 -1.06 9.47 -39.61 -0.38 -1.43 16 24 H 0.08 1.42 6.16 -51.93 -0.32 1.10 16 25 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 29 H 0.08 1.40 6.16 -51.93 -0.32 1.08 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.38 1.86 9.12 45.56 0.42 2.27 16 35 H 0.40 5.82 6.47 -40.82 -0.26 5.55 16 36 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 38 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.09 1.56 6.37 -52.48 -0.33 1.22 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -29.08 321.95 -7.39 -36.46 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.55 Total: 13.75 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.61 Total: -18.04 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.36 Total: -30.55 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.41 Total: -18.91 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.08 -7.39 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272129593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.465 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds