Wall clock time and date at job start Mon Mar 30 2020 01:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47362 * 2 1 4 4 C 1.53002 * 109.47233 * 239.99851 * 2 1 3 5 5 C 1.52997 * 109.47025 * 59.99829 * 4 2 1 6 6 O 1.42898 * 109.46867 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46847 * 119.99929 * 2 1 3 8 8 C 1.34776 * 120.00191 * 299.99385 * 7 2 1 9 9 O 1.21582 * 120.00138 * 0.02562 * 8 7 2 10 10 C 1.47644 * 120.00302 * 180.02562 * 8 7 2 11 11 C 1.40010 * 119.89525 * 180.02562 * 10 8 7 12 12 C 1.36318 * 120.10475 * 180.25163 * 11 10 8 13 13 C 1.40896 * 119.89127 * 359.52661 * 12 11 10 14 14 C 1.41105 * 120.10198 * 180.22988 * 13 12 11 15 15 H 1.08001 * 120.00056 * 204.79556 * 14 13 12 16 16 C 1.40223 * 120.00499 * 24.78776 * 14 13 12 17 17 N 1.30654 * 119.99604 * 17.72846 * 16 14 13 18 18 Si 1.86796 * 120.00554 * 197.72576 * 16 14 13 19 19 H 1.48504 * 109.47116 * 89.99790 * 18 16 14 20 20 H 1.48499 * 109.47678 * 210.00303 * 18 16 14 21 21 H 1.48502 * 109.47123 * 330.00406 * 18 16 14 22 22 C 1.40884 * 119.79293 * 0.49186 * 13 12 11 23 23 C 1.36316 * 119.88998 * 359.73808 * 22 13 12 24 24 H 1.08998 * 109.46768 * 300.00344 * 1 2 3 25 25 H 1.09000 * 109.46573 * 60.00315 * 1 2 3 26 26 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47823 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47152 * 299.99858 * 3 2 1 29 29 H 1.09004 * 109.47583 * 59.99650 * 3 2 1 30 30 H 1.09002 * 109.47144 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.46929 * 300.00300 * 4 2 1 32 32 H 1.09002 * 109.47599 * 300.00260 * 5 4 2 33 33 H 1.08999 * 109.46882 * 60.00442 * 5 4 2 34 34 H 0.96707 * 114.00094 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00227 * 120.00101 * 7 2 1 36 36 H 1.07997 * 119.94878 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.05610 * 179.71795 * 12 11 10 38 38 H 0.97000 * 119.99671 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.05779 * 179.70908 * 22 13 12 40 40 H 1.08006 * 119.94731 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -0.0001 -2.4985 6 8 2.0059 -0.6741 -3.6652 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9935 0.7583 2.5319 10 6 2.1853 -0.9257 3.6258 11 6 1.8453 -0.4457 4.8964 12 6 2.3020 -1.0816 6.0123 13 6 3.1090 -2.2296 5.8856 14 6 3.5801 -2.8942 7.0378 15 1 4.4790 -3.4906 6.9875 16 6 2.8812 -2.7801 8.2481 17 7 1.6418 -2.3668 8.2502 18 14 3.7221 -3.2192 9.8573 19 1 4.3862 -2.0132 10.4139 20 1 2.7113 -3.7184 10.8240 21 1 4.7373 -4.2751 9.6132 22 6 3.4488 -2.7086 4.6050 23 6 2.9913 -2.0631 3.4949 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 0.4400 0.0000 -2.4985 33 1 1.8934 1.0275 -2.4985 34 1 1.7209 -0.2704 -4.4964 35 1 2.5760 -1.4793 1.1073 36 1 1.2241 0.4324 4.9925 37 1 2.0430 -0.7080 6.9920 38 1 1.1582 -2.2882 9.0874 39 1 4.0710 -3.5853 4.5029 40 1 3.2515 -2.4293 2.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272129593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:35 Heat of formation + Delta-G solvation = -103.717032 kcal Electronic energy + Delta-G solvation = -21131.351339 eV Core-core repulsion = 17909.235489 eV Total energy + Delta-G solvation = -3222.115850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19298 -39.32932 -38.29318 -36.77482 -35.68687 -33.48339 -31.83403 -31.17373 -29.61608 -28.26676 -27.67539 -25.12318 -23.58971 -22.75192 -21.18509 -20.33298 -19.32085 -18.88902 -18.08458 -17.09244 -16.71142 -16.34009 -15.80803 -15.74883 -15.70223 -15.10348 -14.60473 -14.57248 -14.44879 -14.29559 -13.98454 -13.65432 -13.25119 -13.13505 -12.91707 -12.82760 -12.64487 -12.51542 -12.35973 -12.30859 -12.10290 -11.77440 -11.73774 -11.34525 -11.12790 -10.75678 -10.40412 -10.00609 -9.56232 -9.40451 -8.78743 -6.48088 0.46675 1.15476 1.37630 1.43317 1.52820 2.13638 2.19150 2.32531 2.80972 3.32568 3.70044 3.89550 3.94882 4.03843 4.29916 4.31154 4.35589 4.41578 4.44327 4.57090 4.76005 4.78919 4.90801 4.94102 4.97586 5.00420 5.02162 5.08668 5.20969 5.26871 5.38888 5.43935 5.59616 5.73885 5.79797 5.97951 6.02652 6.21125 6.56574 6.77260 6.79673 6.90616 6.93493 7.53174 8.16468 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.003299 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.329644 B = 8484.609285 C = 8852.992357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.177 3.823 3 C -0.163 4.163 4 C -0.116 4.116 5 C 0.079 3.921 6 O -0.594 6.594 7 N -0.721 5.721 8 C 0.576 3.424 9 O -0.592 6.592 10 C -0.293 4.293 11 C -0.049 4.049 12 C -0.204 4.204 13 C 0.101 3.899 14 C -0.474 4.474 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.247 4.247 23 C -0.040 4.040 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.295 0.705 39 H 0.114 0.886 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 1.896 -15.205 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.091 3.909 3 C -0.221 4.221 4 C -0.154 4.154 5 C 0.001 3.999 6 O -0.403 6.403 7 N -0.373 5.373 8 C 0.369 3.631 9 O -0.476 6.476 10 C -0.297 4.297 11 C -0.069 4.069 12 C -0.223 4.223 13 C 0.097 3.903 14 C -0.501 4.501 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.428 5.428 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.175 1.175 22 C -0.266 4.266 23 C -0.059 4.059 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.242 0.758 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.447 2.235 -14.579 14.756 hybrid contribution -0.031 -0.059 0.703 0.706 sum 0.417 2.176 -13.876 14.051 Atomic orbital electron populations 1.22275 0.94661 1.02154 1.03052 1.20231 0.94193 0.92536 0.83909 1.22267 1.01048 0.95697 1.03061 1.21621 1.01961 1.00068 0.91717 1.22225 0.98271 0.95208 0.84181 1.86402 1.78165 1.58399 1.17343 1.45921 1.54450 1.32405 1.04531 1.18262 0.78451 0.82768 0.83611 1.90567 1.40995 1.28515 1.87512 1.19270 1.13952 1.04229 0.92281 1.20545 0.96459 0.97406 0.92464 1.20946 1.06096 0.98181 0.97090 1.18139 0.88802 0.89812 0.93508 1.20144 1.09703 1.26329 0.93952 0.89101 1.27018 0.94411 0.92210 1.04883 1.69808 1.09794 1.31892 1.31324 0.85085 0.78993 0.79778 0.75253 1.18655 1.19139 1.17475 1.20938 1.09982 1.03384 0.92331 1.20707 0.94088 0.92869 0.98188 0.93290 0.89389 0.92723 0.92564 0.89424 0.93252 0.90556 0.90683 0.92004 0.91909 0.75047 0.75817 0.88988 0.87895 0.89411 0.86771 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 8.05 71.98 0.58 -3.67 16 2 C 0.18 4.48 0.83 3.60 0.00 4.49 16 3 C -0.16 -4.16 8.05 71.98 0.58 -3.58 16 4 C -0.12 -2.28 4.75 30.59 0.15 -2.14 16 5 C 0.08 1.22 6.34 71.98 0.46 1.67 16 6 O -0.59 -9.50 13.66 -148.98 -2.03 -11.54 16 7 N -0.72 -22.39 5.05 -425.95 -2.15 -24.54 16 8 C 0.58 23.71 7.18 86.73 0.62 24.33 16 9 O -0.59 -27.33 12.53 -3.97 -0.05 -27.38 16 10 C -0.29 -13.37 5.89 -19.93 -0.12 -13.48 16 11 C -0.05 -2.51 9.52 22.25 0.21 -2.30 16 12 C -0.20 -10.92 8.63 22.47 0.19 -10.73 16 13 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 14 C -0.47 -24.08 9.04 23.46 0.21 -23.87 16 15 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 16 C 0.03 1.59 5.14 85.35 0.44 2.03 16 17 N -0.80 -40.66 10.95 21.87 0.24 -40.42 16 18 Si 0.99 35.75 29.60 68.60 2.03 37.78 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 21 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 22 C -0.25 -11.38 9.73 22.47 0.22 -11.16 16 23 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 24 H 0.05 1.64 6.16 -2.39 -0.01 1.63 16 25 H 0.09 1.70 6.43 -2.39 -0.02 1.69 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.67 6.43 -2.38 -0.02 1.65 16 29 H 0.05 1.63 6.16 -2.39 -0.01 1.62 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 33 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 34 H 0.40 2.51 9.12 -74.05 -0.68 1.84 16 35 H 0.41 10.85 6.47 -92.71 -0.60 10.25 16 36 H 0.09 4.69 7.63 -2.91 -0.02 4.67 16 37 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 38 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.13 4.22 6.37 -2.91 -0.02 4.20 16 Total: -1.00 -65.12 321.95 1.47 -63.64 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.20 Total: 37.17 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.64 Total: -34.71 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.91 Total: -64.96 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.08 Total: -38.92 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -65.12 1.47 -63.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272129593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.072 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds