Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47599 * 2 1 4 4 C 1.53004 * 109.47135 * 119.99879 * 2 1 3 5 5 H 1.08994 * 109.47324 * 302.84135 * 4 2 1 6 6 C 1.53002 * 109.47114 * 62.83709 * 4 2 1 7 7 O 1.42906 * 109.46723 * 54.93354 * 6 4 2 8 8 N 1.46497 * 109.47438 * 182.83902 * 4 2 1 9 9 C 1.34779 * 120.00088 * 155.00289 * 8 4 2 10 10 O 1.21541 * 119.99904 * 359.97438 * 9 8 4 11 11 C 1.47881 * 119.99653 * 180.02562 * 9 8 4 12 12 C 1.39919 * 120.02922 * 0.28823 * 11 9 8 13 13 C 1.38328 * 120.35920 * 180.25637 * 12 11 9 14 14 C 1.37760 * 120.41096 * 359.45147 * 13 12 11 15 15 C 1.40743 * 120.03734 * 0.27432 * 14 13 12 16 16 C 1.41444 * 120.17657 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99647 * 26.89404 * 16 15 14 18 18 C 1.39933 * 120.00269 * 206.88872 * 16 15 14 19 19 N 1.30832 * 119.99744 * 12.94157 * 18 16 15 20 20 Si 1.86794 * 120.00296 * 192.93807 * 18 16 15 21 21 H 1.48497 * 109.46971 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47113 * 300.00321 * 20 18 16 24 24 C 1.38996 * 120.02315 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47362 * 173.65900 * 1 2 3 26 26 H 1.08995 * 109.47189 * 293.65993 * 1 2 3 27 27 H 1.08996 * 109.46719 * 53.65715 * 1 2 3 28 28 H 1.08998 * 109.47182 * 239.99350 * 2 1 3 29 29 H 1.08997 * 109.46924 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46805 * 300.00089 * 3 2 1 31 31 H 1.09000 * 109.46712 * 59.99803 * 3 2 1 32 32 H 1.08993 * 109.47489 * 174.93396 * 6 4 2 33 33 H 1.09002 * 109.47185 * 294.93585 * 6 4 2 34 34 H 0.96707 * 113.99859 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99915 * 334.99540 * 8 4 2 36 36 H 1.08004 * 119.82005 * 359.97438 * 12 11 9 37 37 H 1.08001 * 119.79565 * 179.72247 * 13 12 11 38 38 H 1.07999 * 119.97582 * 180.25064 * 14 13 12 39 39 H 0.96998 * 119.99449 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.20233 * 0.04202 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6357 -0.2377 2.1385 6 6 1.5891 -2.1829 1.2141 7 8 2.0195 -2.7848 -0.0085 8 7 3.5034 -0.6623 1.2840 9 6 4.1539 -0.7566 2.4607 10 8 3.5264 -0.8901 3.4930 11 6 5.6311 -0.6966 2.4957 12 6 6.3537 -0.5358 1.3084 13 6 7.7358 -0.4841 1.3327 14 6 8.4163 -0.5788 2.5267 15 6 7.7062 -0.7352 3.7318 16 6 8.4020 -0.8333 4.9594 17 1 9.3749 -0.3769 5.0666 18 6 7.8297 -1.5217 6.0349 19 7 6.7837 -2.2835 5.8418 20 14 8.5593 -1.3532 7.7462 21 1 8.5129 0.0704 8.1660 22 1 7.7761 -2.1773 8.7016 23 1 9.9693 -1.8192 7.7313 24 6 6.3024 -0.7932 3.7089 25 1 -0.3634 -1.0214 -0.1135 26 1 -0.3633 0.4124 0.9412 27 1 -0.3632 0.6090 -0.8278 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.0267 -2.7185 2.0565 33 1 0.5020 -2.2295 1.2791 34 1 1.7681 -3.7142 -0.0992 35 1 4.0042 -0.5555 0.4602 36 1 5.8297 -0.4562 0.3674 37 1 8.2846 -0.3642 0.4103 38 1 9.4953 -0.5335 2.5379 39 1 6.3869 -2.7604 6.5874 40 1 5.7486 -0.9130 4.6284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272147780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -86.167018 kcal Electronic energy + Delta-G solvation = -21562.932927 eV Core-core repulsion = 18341.578103 eV Total energy + Delta-G solvation = -3221.354824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58804 -37.75927 -36.69825 -35.40469 -33.73491 -32.80437 -30.22823 -29.40744 -28.41993 -26.93409 -25.26457 -23.57936 -22.00656 -20.93901 -20.03490 -19.34718 -17.66216 -17.29268 -16.34360 -15.66212 -15.22144 -14.99028 -14.78154 -14.50836 -13.92860 -13.57905 -13.46648 -13.10994 -12.83847 -12.70717 -12.48694 -12.28108 -12.23148 -11.96593 -11.60859 -11.13408 -11.09709 -11.07744 -10.80221 -10.71375 -10.59403 -10.46303 -9.99722 -9.90226 -9.67469 -9.22085 -8.96185 -8.57660 -7.59743 -7.46629 -6.73311 -4.40421 2.23987 2.84808 3.08839 3.10898 3.17536 3.71188 3.88718 3.94808 4.37300 4.66982 4.69296 4.90974 5.05122 5.37635 5.39914 5.50023 5.60038 5.63024 5.65197 5.79808 5.82287 5.89396 5.95077 6.07078 6.12176 6.27651 6.31047 6.38608 6.74034 6.94557 7.02199 7.05418 7.25099 7.41273 7.64778 7.72985 7.79698 7.96014 8.15818 8.23537 8.53715 8.83697 8.86165 9.00565 10.20532 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.004410 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.314166 B = 6348.038934 C = 6839.736711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.148 4.148 4 C 0.155 3.845 5 H 0.095 0.905 6 C 0.062 3.938 7 O -0.567 6.567 8 N -0.723 5.723 9 C 0.564 3.436 10 O -0.551 6.551 11 C -0.130 4.130 12 C -0.212 4.212 13 C -0.101 4.101 14 C -0.209 4.209 15 C 0.098 3.902 16 C -0.462 4.462 17 H 0.080 0.920 18 C 0.072 3.928 19 N -0.791 5.791 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.089 4.089 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.374 0.626 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 1.615 -9.206 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.206 4.206 4 C 0.049 3.951 5 H 0.113 0.887 6 C -0.017 4.017 7 O -0.372 6.372 8 N -0.376 5.376 9 C 0.355 3.645 10 O -0.430 6.430 11 C -0.133 4.133 12 C -0.232 4.232 13 C -0.119 4.119 14 C -0.229 4.229 15 C 0.095 3.905 16 C -0.491 4.491 17 H 0.098 0.902 18 C -0.146 4.146 19 N -0.416 5.416 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.109 4.109 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.222 1.955 -8.418 13.385 hybrid contribution 0.294 -0.658 0.457 0.853 sum -9.928 1.298 -7.961 12.792 Atomic orbital electron populations 1.21808 0.94656 1.01784 1.01825 1.21280 0.96015 0.96230 0.98346 1.21852 1.01708 0.95490 1.01514 1.20995 0.81766 0.93318 0.99004 0.88698 1.22691 0.97440 0.94824 0.86753 1.86460 1.81931 1.29201 1.39570 1.45903 1.05865 1.75964 1.09820 1.18851 0.88557 0.74535 0.82529 1.90678 1.69109 1.49946 1.33217 1.19499 0.90183 1.08099 0.95509 1.20384 0.94044 1.13600 0.95157 1.20444 0.93720 1.01126 0.96617 1.21136 0.97920 1.11457 0.92347 1.17607 0.91437 0.88978 0.92456 1.19548 1.04034 1.30259 0.95274 0.90230 1.25944 0.94305 0.93144 1.01241 1.69766 1.18288 1.19712 1.33815 0.86294 0.79716 0.79472 0.80812 1.18796 1.20269 1.19019 1.21706 0.94298 0.98715 0.96173 0.92483 0.92647 0.92460 0.89791 0.92166 0.92752 0.92689 0.92921 0.93221 0.77966 0.76371 0.89189 0.88901 0.88620 0.90524 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.73 37.16 0.32 -1.02 16 2 C -0.10 -1.14 2.39 -90.62 -0.22 -1.36 16 3 C -0.15 -1.67 9.00 37.16 0.33 -1.33 16 4 C 0.15 2.23 1.95 -67.93 -0.13 2.10 16 5 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 6 C 0.06 0.83 6.43 37.16 0.24 1.07 16 7 O -0.57 -7.08 12.67 -35.23 -0.45 -7.53 16 8 N -0.72 -12.40 4.24 -54.74 -0.23 -12.63 16 9 C 0.56 12.50 7.74 -12.31 -0.10 12.40 16 10 O -0.55 -13.78 15.99 5.33 0.09 -13.69 16 11 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 12 C -0.21 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.10 -2.19 10.01 -39.72 -0.40 -2.58 16 14 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 15 C 0.10 2.61 5.56 -106.87 -0.59 2.02 16 16 C -0.46 -12.27 9.06 -37.73 -0.34 -12.61 16 17 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 18 C 0.07 1.83 5.22 -17.34 -0.09 1.74 16 19 N -0.79 -21.22 10.83 55.55 0.60 -20.62 16 20 Si 0.91 19.00 29.58 -169.99 -5.03 13.98 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 C -0.09 -2.40 8.22 -38.44 -0.32 -2.71 16 25 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.00 7.46 -51.93 -0.39 0.62 16 29 H 0.06 0.74 7.26 -51.93 -0.38 0.36 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.54 6.92 -51.93 -0.36 0.18 16 34 H 0.37 3.12 9.12 45.56 0.42 3.53 16 35 H 0.40 6.33 6.23 -40.82 -0.25 6.08 16 36 H 0.09 1.63 6.38 -52.48 -0.33 1.30 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 40 H 0.14 3.97 5.73 -52.48 -0.30 3.67 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -30.47 330.78 -7.55 -38.02 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.86 Total: 13.83 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.65 Total: -16.34 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.37 Total: -33.25 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.36 Total: -21.22 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.47 -7.55 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272147780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.145 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds