Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47599 * 2 1 4 4 C 1.53004 * 109.47135 * 119.99879 * 2 1 3 5 5 H 1.08994 * 109.47324 * 302.84135 * 4 2 1 6 6 C 1.53002 * 109.47114 * 62.83709 * 4 2 1 7 7 O 1.42906 * 109.46723 * 54.93354 * 6 4 2 8 8 N 1.46497 * 109.47438 * 182.83902 * 4 2 1 9 9 C 1.34779 * 120.00088 * 155.00289 * 8 4 2 10 10 O 1.21541 * 119.99904 * 359.97438 * 9 8 4 11 11 C 1.47881 * 119.99653 * 180.02562 * 9 8 4 12 12 C 1.39919 * 120.02922 * 0.28823 * 11 9 8 13 13 C 1.38328 * 120.35920 * 180.25637 * 12 11 9 14 14 C 1.37760 * 120.41096 * 359.45147 * 13 12 11 15 15 C 1.40743 * 120.03734 * 0.27432 * 14 13 12 16 16 C 1.41444 * 120.17657 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99647 * 26.89404 * 16 15 14 18 18 C 1.39933 * 120.00269 * 206.88872 * 16 15 14 19 19 N 1.30832 * 119.99744 * 12.94157 * 18 16 15 20 20 Si 1.86794 * 120.00296 * 192.93807 * 18 16 15 21 21 H 1.48497 * 109.46971 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47113 * 300.00321 * 20 18 16 24 24 C 1.38996 * 120.02315 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47362 * 173.65900 * 1 2 3 26 26 H 1.08995 * 109.47189 * 293.65993 * 1 2 3 27 27 H 1.08996 * 109.46719 * 53.65715 * 1 2 3 28 28 H 1.08998 * 109.47182 * 239.99350 * 2 1 3 29 29 H 1.08997 * 109.46924 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46805 * 300.00089 * 3 2 1 31 31 H 1.09000 * 109.46712 * 59.99803 * 3 2 1 32 32 H 1.08993 * 109.47489 * 174.93396 * 6 4 2 33 33 H 1.09002 * 109.47185 * 294.93585 * 6 4 2 34 34 H 0.96707 * 113.99859 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99915 * 334.99540 * 8 4 2 36 36 H 1.08004 * 119.82005 * 359.97438 * 12 11 9 37 37 H 1.08001 * 119.79565 * 179.72247 * 13 12 11 38 38 H 1.07999 * 119.97582 * 180.25064 * 14 13 12 39 39 H 0.96998 * 119.99449 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.20233 * 0.04202 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6357 -0.2377 2.1385 6 6 1.5891 -2.1829 1.2141 7 8 2.0195 -2.7848 -0.0085 8 7 3.5034 -0.6623 1.2840 9 6 4.1539 -0.7566 2.4607 10 8 3.5264 -0.8901 3.4930 11 6 5.6311 -0.6966 2.4957 12 6 6.3537 -0.5358 1.3084 13 6 7.7358 -0.4841 1.3327 14 6 8.4163 -0.5788 2.5267 15 6 7.7062 -0.7352 3.7318 16 6 8.4020 -0.8333 4.9594 17 1 9.3749 -0.3769 5.0666 18 6 7.8297 -1.5217 6.0349 19 7 6.7837 -2.2835 5.8418 20 14 8.5593 -1.3532 7.7462 21 1 8.5129 0.0704 8.1660 22 1 7.7761 -2.1773 8.7016 23 1 9.9693 -1.8192 7.7313 24 6 6.3024 -0.7932 3.7089 25 1 -0.3634 -1.0214 -0.1135 26 1 -0.3633 0.4124 0.9412 27 1 -0.3632 0.6090 -0.8278 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.0267 -2.7185 2.0565 33 1 0.5020 -2.2295 1.2791 34 1 1.7681 -3.7142 -0.0992 35 1 4.0042 -0.5555 0.4602 36 1 5.8297 -0.4562 0.3674 37 1 8.2846 -0.3642 0.4103 38 1 9.4953 -0.5335 2.5379 39 1 6.3869 -2.7604 6.5874 40 1 5.7486 -0.9130 4.6284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272147780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -107.091520 kcal Electronic energy + Delta-G solvation = -21563.840282 eV Core-core repulsion = 18341.578103 eV Total energy + Delta-G solvation = -3222.262178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15013 -39.25984 -38.31899 -36.45249 -35.60882 -34.23710 -31.98770 -31.27530 -29.60238 -27.86947 -27.14930 -24.96105 -23.46067 -22.78674 -21.31980 -20.90088 -19.42569 -18.37685 -17.94286 -17.19183 -16.91362 -16.45966 -16.21533 -15.82990 -15.50540 -15.07516 -15.05108 -14.46859 -14.32015 -14.27062 -13.80865 -13.52127 -13.33562 -13.11912 -12.95607 -12.85920 -12.80368 -12.52754 -12.21215 -12.01332 -11.90089 -11.74189 -11.58089 -11.50108 -11.09690 -11.00010 -10.68958 -10.08012 -9.45911 -9.36989 -8.62405 -6.40253 0.37950 1.01219 1.36217 1.48035 1.50012 2.10443 2.19984 2.25657 2.80631 3.37793 3.65615 3.69285 3.94761 4.04894 4.13609 4.35929 4.41339 4.42655 4.56905 4.59218 4.66727 4.81017 4.85790 4.92155 5.01445 5.04202 5.08831 5.18709 5.23001 5.32125 5.38702 5.44770 5.51589 5.59981 5.86430 5.92136 6.05808 6.28410 6.52258 6.69914 6.84666 6.88327 6.94471 7.32858 8.33219 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.004410 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.314166 B = 6348.038934 C = 6839.736711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.149 4.149 4 C 0.146 3.854 5 H 0.078 0.922 6 C 0.069 3.931 7 O -0.574 6.574 8 N -0.700 5.700 9 C 0.561 3.439 10 O -0.590 6.590 11 C -0.141 4.141 12 C -0.194 4.194 13 C -0.098 4.098 14 C -0.214 4.214 15 C 0.066 3.934 16 C -0.499 4.499 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.832 5.832 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.253 1.253 24 C -0.127 4.127 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.394 0.606 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 2.068 -11.729 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.206 4.206 4 C 0.041 3.959 5 H 0.096 0.904 6 C -0.010 4.010 7 O -0.381 6.381 8 N -0.352 5.352 9 C 0.351 3.649 10 O -0.472 6.472 11 C -0.144 4.144 12 C -0.214 4.214 13 C -0.116 4.116 14 C -0.234 4.234 15 C 0.064 3.936 16 C -0.529 4.529 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.459 5.459 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.148 4.148 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.247 0.753 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.604 2.403 -11.011 15.475 hybrid contribution 0.344 -0.781 1.004 1.318 sum -10.261 1.622 -10.007 14.424 Atomic orbital electron populations 1.21802 0.92744 1.02675 1.02583 1.21231 0.97471 0.95762 0.96306 1.21870 1.00949 0.95533 1.02276 1.21290 0.79677 0.94737 1.00190 0.90375 1.22511 0.98930 0.93506 0.86037 1.86400 1.82249 1.30949 1.38538 1.45740 1.07286 1.73758 1.08393 1.18720 0.88076 0.74721 0.83405 1.90652 1.69601 1.52010 1.34938 1.19820 0.91609 1.07400 0.95592 1.20852 0.94376 1.10490 0.95668 1.20925 0.93981 0.99194 0.97456 1.21444 0.98831 1.10638 0.92450 1.17957 0.91693 0.90024 0.93915 1.19856 1.04748 1.31761 0.96507 0.89796 1.26860 0.94437 0.92172 1.05197 1.69886 1.20016 1.21024 1.34942 0.85199 0.79296 0.79471 0.75440 1.18422 1.19704 1.17675 1.21510 0.94729 1.02261 0.96272 0.91780 0.92718 0.90706 0.89474 0.93345 0.90502 0.93465 0.96360 0.90160 0.75712 0.75279 0.85013 0.84353 0.87221 0.90445 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.73 71.98 0.63 -1.58 16 2 C -0.09 -1.81 2.39 -10.79 -0.03 -1.83 16 3 C -0.15 -3.00 9.00 71.98 0.65 -2.35 16 4 C 0.15 4.06 1.95 44.99 0.09 4.14 16 5 H 0.08 2.47 7.58 -2.39 -0.02 2.46 16 6 C 0.07 1.77 6.43 71.98 0.46 2.23 16 7 O -0.57 -12.95 12.67 -148.98 -1.89 -14.84 16 8 N -0.70 -23.42 4.24 -445.38 -1.89 -25.31 16 9 C 0.56 25.37 7.74 86.80 0.67 26.04 16 10 O -0.59 -31.08 15.99 -3.84 -0.06 -31.14 16 11 C -0.14 -6.87 5.87 -20.13 -0.12 -6.99 16 12 C -0.19 -7.91 9.55 22.70 0.22 -7.70 16 13 C -0.10 -3.97 10.01 22.18 0.22 -3.74 16 14 C -0.21 -10.17 9.78 22.77 0.22 -9.95 16 15 C 0.07 3.67 5.56 -21.32 -0.12 3.55 16 16 C -0.50 -27.62 9.06 23.47 0.21 -27.41 16 17 H 0.08 4.36 7.88 -2.91 -0.02 4.33 16 18 C 0.03 1.44 5.22 85.25 0.45 1.89 16 19 N -0.83 -47.34 10.83 21.82 0.24 -47.10 16 20 Si 0.99 40.20 29.58 68.60 2.03 42.23 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 24 C -0.13 -7.23 8.22 23.01 0.19 -7.04 16 25 H 0.06 0.93 6.96 -2.39 -0.02 0.91 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.78 7.46 -2.39 -0.02 1.76 16 29 H 0.05 1.07 7.26 -2.39 -0.02 1.06 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 1.57 6.92 -2.39 -0.02 1.56 16 34 H 0.39 5.57 9.12 -74.05 -0.68 4.90 16 35 H 0.41 11.98 6.23 -92.71 -0.58 11.40 16 36 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 37 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 40 H 0.10 6.39 5.73 -2.91 -0.02 6.38 16 Total: -1.00 -70.64 330.78 1.98 -68.66 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.19 Total: 38.23 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.74 Total: -30.73 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.65 Total: -72.41 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.95 Total: -45.98 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -70.64 1.98 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272147780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.429 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds