Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53006 * 109.47570 * 120.00457 * 2 1 3 5 5 H 1.08993 * 109.46789 * 303.32001 * 4 2 1 6 6 C 1.53007 * 109.46998 * 63.31871 * 4 2 1 7 7 O 1.42901 * 109.47140 * 54.05406 * 6 4 2 8 8 N 1.46491 * 109.47177 * 183.31694 * 4 2 1 9 9 C 1.34777 * 119.99729 * 154.99795 * 8 4 2 10 10 O 1.21583 * 120.00165 * 0.02562 * 9 8 4 11 11 C 1.47643 * 120.00108 * 180.02562 * 9 8 4 12 12 C 1.40010 * 119.89758 * 180.02562 * 11 9 8 13 13 C 1.36319 * 120.10867 * 180.27711 * 12 11 9 14 14 C 1.40891 * 119.88937 * 359.49896 * 13 12 11 15 15 C 1.41108 * 120.10258 * 180.23272 * 14 13 12 16 16 H 1.08000 * 119.99891 * 205.59941 * 15 14 13 17 17 C 1.40225 * 120.00321 * 25.60529 * 15 14 13 18 18 N 1.30655 * 119.99560 * 26.62973 * 17 15 14 19 19 Si 1.86800 * 120.00192 * 206.62860 * 17 15 14 20 20 H 1.48502 * 109.46952 * 94.98667 * 19 17 15 21 21 H 1.48495 * 109.47113 * 214.98224 * 19 17 15 22 22 H 1.48497 * 109.46973 * 334.98728 * 19 17 15 23 23 C 1.40885 * 119.79347 * 0.49638 * 14 13 12 24 24 C 1.36318 * 119.89322 * 359.76144 * 23 14 13 25 25 H 1.09000 * 109.47332 * 177.25892 * 1 2 3 26 26 H 1.09002 * 109.47064 * 297.25582 * 1 2 3 27 27 H 1.08997 * 109.47345 * 57.25399 * 1 2 3 28 28 H 1.09004 * 109.46934 * 240.00257 * 2 1 3 29 29 H 1.09002 * 109.46993 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47193 * 300.00464 * 3 2 1 31 31 H 1.09004 * 109.46876 * 60.00221 * 3 2 1 32 32 H 1.08995 * 109.46828 * 174.05746 * 6 4 2 33 33 H 1.08996 * 109.46550 * 294.05440 * 6 4 2 34 34 H 0.96700 * 113.99675 * 179.97438 * 7 6 4 35 35 H 0.96998 * 120.00732 * 335.00263 * 8 4 2 36 36 H 1.07996 * 119.94845 * 359.97438 * 12 11 9 37 37 H 1.08002 * 120.05671 * 179.74762 * 13 12 11 38 38 H 0.97002 * 119.99542 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.05666 * 179.73271 * 23 14 13 40 40 H 1.07994 * 119.95039 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6290 -0.2431 2.1382 6 6 1.5994 -2.1860 1.2080 7 8 2.0208 -2.7758 -0.0235 8 7 3.5028 -0.6525 1.2897 9 6 4.1494 -0.7456 2.4686 10 8 3.5186 -0.8873 3.4984 11 6 5.6236 -0.6757 2.5096 12 6 6.2930 -0.7732 3.7354 13 6 7.6537 -0.7035 3.7789 14 6 8.3870 -0.5436 2.5866 15 6 9.7959 -0.4758 2.6258 16 1 10.3338 0.0388 1.8434 17 6 10.4977 -1.0767 3.6807 18 7 9.9788 -2.0947 4.3143 19 14 12.1743 -0.4217 4.1800 20 1 12.0165 0.5390 5.3014 21 1 13.0376 -1.5498 4.6126 22 1 12.8015 0.2664 3.0232 23 6 7.7089 -0.4460 1.3555 24 6 6.3477 -0.5115 1.3226 25 1 -0.3634 -1.0265 -0.0491 26 1 -0.3633 0.4706 0.9136 27 1 -0.3634 0.5559 -0.8643 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0499 -2.7245 2.0417 33 1 0.5135 -2.2409 1.2843 34 1 1.7752 -3.7063 -0.1183 35 1 4.0061 -0.5398 0.4682 36 1 5.7303 -0.8990 4.6486 37 1 8.1691 -0.7748 4.7254 38 1 10.4641 -2.5101 5.0443 39 1 8.2666 -0.3190 0.4393 40 1 5.8270 -0.4364 0.3795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272222567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -91.081483 kcal Electronic energy + Delta-G solvation = -21283.847261 eV Core-core repulsion = 18062.279330 eV Total energy + Delta-G solvation = -3221.567931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.50702 -37.77214 -36.73888 -35.38968 -33.87686 -32.78651 -30.20555 -29.57783 -28.46039 -27.02753 -25.67126 -23.28158 -21.81898 -20.88983 -19.99663 -19.45362 -17.53863 -17.26139 -16.83462 -15.86654 -15.31297 -15.01098 -14.81671 -14.08185 -13.93294 -13.54501 -13.47964 -13.14716 -12.81667 -12.73069 -12.35453 -12.22691 -12.19046 -11.97898 -11.87840 -11.38353 -11.24990 -11.08141 -10.94728 -10.78351 -10.61579 -10.56602 -10.04608 -9.91455 -9.50469 -9.26658 -8.92180 -8.52369 -7.67859 -7.58235 -7.07908 -4.56374 2.27196 2.91886 2.97939 3.00455 3.04891 3.75516 3.80576 3.87903 4.36590 4.56632 4.69608 4.92233 5.06782 5.37802 5.41174 5.50538 5.58245 5.62595 5.70773 5.80753 5.84791 5.90874 6.02464 6.07670 6.12522 6.29259 6.32025 6.42155 6.81350 6.84621 7.01359 7.07100 7.12991 7.45728 7.64759 7.64942 7.78410 7.90123 8.06715 8.31814 8.42557 8.63516 8.77228 9.12885 9.86544 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.003592 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.154212 B = 7792.887421 C = 7968.464059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.148 4.148 4 C 0.156 3.844 5 H 0.094 0.906 6 C 0.063 3.937 7 O -0.567 6.567 8 N -0.728 5.728 9 C 0.572 3.428 10 O -0.579 6.579 11 C -0.286 4.286 12 C -0.032 4.032 13 C -0.189 4.189 14 C 0.132 3.868 15 C -0.450 4.450 16 H 0.087 0.913 17 C 0.081 3.919 18 N -0.759 5.759 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.236 4.236 24 C -0.045 4.045 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.374 0.626 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.288 0.712 39 H 0.097 0.903 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 1.422 -6.697 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.051 3.949 5 H 0.111 0.889 6 C -0.016 4.016 7 O -0.371 6.371 8 N -0.380 5.380 9 C 0.367 3.633 10 O -0.461 6.461 11 C -0.290 4.290 12 C -0.051 4.051 13 C -0.208 4.208 14 C 0.129 3.871 15 C -0.477 4.477 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.381 5.381 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.255 4.255 24 C -0.064 4.064 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.220 0.780 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.298 1.739 -5.887 12.858 hybrid contribution 0.759 -0.464 0.018 0.890 sum -10.539 1.275 -5.869 12.130 Atomic orbital electron populations 1.21807 0.94737 1.01756 1.01753 1.21281 0.95950 0.96237 0.98450 1.21842 1.01711 0.95497 1.01441 1.20936 0.82113 0.93072 0.98822 0.88857 1.22696 0.97398 0.95097 0.86450 1.86468 1.82601 1.29233 1.38838 1.45857 1.05699 1.76624 1.09858 1.18597 0.88348 0.74165 0.82200 1.90619 1.69232 1.52661 1.33626 1.18879 0.89990 1.25262 0.94909 1.20430 0.94232 0.95019 0.95466 1.20795 0.92318 1.09545 0.98140 1.17731 0.93233 0.85338 0.90816 1.19805 0.91827 1.29228 1.06844 0.89546 1.26090 1.00718 0.92766 0.94685 1.69801 1.38880 1.13266 1.16153 0.86302 0.80709 0.79756 0.80167 1.18887 1.20032 1.18161 1.20652 0.93378 1.14593 0.96920 1.20377 0.94359 0.96728 0.94958 0.92508 0.92706 0.92508 0.89809 0.92168 0.92808 0.92743 0.93052 0.93364 0.78030 0.76662 0.88259 0.87313 0.90081 0.88507 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.85 37.15 0.33 -1.02 16 2 C -0.10 -1.15 2.39 -90.62 -0.22 -1.37 16 3 C -0.15 -1.67 9.00 37.16 0.33 -1.34 16 4 C 0.16 2.24 1.95 -67.93 -0.13 2.10 16 5 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 6 C 0.06 0.82 6.42 37.16 0.24 1.06 16 7 O -0.57 -7.03 12.64 -35.23 -0.45 -7.47 16 8 N -0.73 -12.39 4.25 -54.81 -0.23 -12.62 16 9 C 0.57 12.29 7.73 -12.42 -0.10 12.20 16 10 O -0.58 -13.86 15.98 5.29 0.08 -13.77 16 11 C -0.29 -6.64 5.89 -104.73 -0.62 -7.26 16 12 C -0.03 -0.80 9.52 -39.61 -0.38 -1.17 16 13 C -0.19 -4.86 8.68 -39.27 -0.34 -5.21 16 14 C 0.13 3.39 5.54 -106.80 -0.59 2.80 16 15 C -0.45 -11.29 8.98 -37.75 -0.34 -11.63 16 16 H 0.09 2.06 7.97 -52.49 -0.42 1.64 16 17 C 0.08 1.92 4.90 -17.31 -0.08 1.83 16 18 N -0.76 -18.71 11.61 55.56 0.64 -18.06 16 19 Si 0.91 17.44 29.63 -169.99 -5.04 12.40 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 C -0.24 -5.55 9.73 -39.27 -0.38 -5.93 16 24 C -0.05 -0.98 9.47 -39.61 -0.38 -1.36 16 25 H 0.06 0.51 6.79 -51.93 -0.35 0.16 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.02 7.43 -51.93 -0.39 0.63 16 29 H 0.06 0.75 7.23 -51.93 -0.38 0.37 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.52 6.89 -51.93 -0.36 0.16 16 34 H 0.37 3.06 9.12 45.56 0.42 3.48 16 35 H 0.40 6.31 6.18 -40.82 -0.25 6.06 16 36 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 37 H 0.11 2.84 6.56 -52.49 -0.34 2.50 16 38 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 39 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -29.32 331.29 -7.52 -36.83 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -4.87 Total: 13.99 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.65 Total: -16.29 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.41 Total: -30.68 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.36 Total: -21.25 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.04 Total: 12.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.32 -7.52 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272222567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.250 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds