Wall clock time and date at job start Mon Mar 30 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53006 * 109.47570 * 120.00457 * 2 1 3 5 5 H 1.08993 * 109.46789 * 303.32001 * 4 2 1 6 6 C 1.53007 * 109.46998 * 63.31871 * 4 2 1 7 7 O 1.42901 * 109.47140 * 54.05406 * 6 4 2 8 8 N 1.46491 * 109.47177 * 183.31694 * 4 2 1 9 9 C 1.34777 * 119.99729 * 154.99795 * 8 4 2 10 10 O 1.21583 * 120.00165 * 0.02562 * 9 8 4 11 11 C 1.47643 * 120.00108 * 180.02562 * 9 8 4 12 12 C 1.40010 * 119.89758 * 180.02562 * 11 9 8 13 13 C 1.36319 * 120.10867 * 180.27711 * 12 11 9 14 14 C 1.40891 * 119.88937 * 359.49896 * 13 12 11 15 15 C 1.41108 * 120.10258 * 180.23272 * 14 13 12 16 16 H 1.08000 * 119.99891 * 205.59941 * 15 14 13 17 17 C 1.40225 * 120.00321 * 25.60529 * 15 14 13 18 18 N 1.30655 * 119.99560 * 26.62973 * 17 15 14 19 19 Si 1.86800 * 120.00192 * 206.62860 * 17 15 14 20 20 H 1.48502 * 109.46952 * 94.98667 * 19 17 15 21 21 H 1.48495 * 109.47113 * 214.98224 * 19 17 15 22 22 H 1.48497 * 109.46973 * 334.98728 * 19 17 15 23 23 C 1.40885 * 119.79347 * 0.49638 * 14 13 12 24 24 C 1.36318 * 119.89322 * 359.76144 * 23 14 13 25 25 H 1.09000 * 109.47332 * 177.25892 * 1 2 3 26 26 H 1.09002 * 109.47064 * 297.25582 * 1 2 3 27 27 H 1.08997 * 109.47345 * 57.25399 * 1 2 3 28 28 H 1.09004 * 109.46934 * 240.00257 * 2 1 3 29 29 H 1.09002 * 109.46993 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47193 * 300.00464 * 3 2 1 31 31 H 1.09004 * 109.46876 * 60.00221 * 3 2 1 32 32 H 1.08995 * 109.46828 * 174.05746 * 6 4 2 33 33 H 1.08996 * 109.46550 * 294.05440 * 6 4 2 34 34 H 0.96700 * 113.99675 * 179.97438 * 7 6 4 35 35 H 0.96998 * 120.00732 * 335.00263 * 8 4 2 36 36 H 1.07996 * 119.94845 * 359.97438 * 12 11 9 37 37 H 1.08002 * 120.05671 * 179.74762 * 13 12 11 38 38 H 0.97002 * 119.99542 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.05666 * 179.73271 * 23 14 13 40 40 H 1.07994 * 119.95039 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6290 -0.2431 2.1382 6 6 1.5994 -2.1860 1.2080 7 8 2.0208 -2.7758 -0.0235 8 7 3.5028 -0.6525 1.2897 9 6 4.1494 -0.7456 2.4686 10 8 3.5186 -0.8873 3.4984 11 6 5.6236 -0.6757 2.5096 12 6 6.2930 -0.7732 3.7354 13 6 7.6537 -0.7035 3.7789 14 6 8.3870 -0.5436 2.5866 15 6 9.7959 -0.4758 2.6258 16 1 10.3338 0.0388 1.8434 17 6 10.4977 -1.0767 3.6807 18 7 9.9788 -2.0947 4.3143 19 14 12.1743 -0.4217 4.1800 20 1 12.0165 0.5390 5.3014 21 1 13.0376 -1.5498 4.6126 22 1 12.8015 0.2664 3.0232 23 6 7.7089 -0.4460 1.3555 24 6 6.3477 -0.5115 1.3226 25 1 -0.3634 -1.0265 -0.0491 26 1 -0.3633 0.4706 0.9136 27 1 -0.3634 0.5559 -0.8643 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0499 -2.7245 2.0417 33 1 0.5135 -2.2409 1.2843 34 1 1.7752 -3.7063 -0.1183 35 1 4.0061 -0.5398 0.4682 36 1 5.7303 -0.8990 4.6486 37 1 8.1691 -0.7748 4.7254 38 1 10.4641 -2.5101 5.0443 39 1 8.2666 -0.3190 0.4393 40 1 5.8270 -0.4364 0.3795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272222567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:51 Heat of formation + Delta-G solvation = -110.311337 kcal Electronic energy + Delta-G solvation = -21284.681130 eV Core-core repulsion = 18062.279330 eV Total energy + Delta-G solvation = -3222.401800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02907 -39.30318 -38.29548 -36.41569 -35.70127 -34.17102 -32.00254 -31.39940 -29.66035 -28.09161 -27.26996 -24.54266 -23.46718 -22.67132 -21.29160 -20.94386 -19.36415 -18.42277 -18.30852 -17.25729 -17.00765 -16.27610 -15.94148 -15.73767 -15.50515 -15.12350 -14.98288 -14.43197 -14.32554 -14.00969 -13.83195 -13.69830 -13.34497 -13.22325 -13.08859 -12.93275 -12.82288 -12.63790 -12.34470 -11.99050 -11.79588 -11.72110 -11.53636 -11.35817 -11.07536 -10.96713 -10.61987 -9.99407 -9.57981 -9.45018 -8.87142 -6.46765 0.45462 1.13671 1.36313 1.42689 1.53234 2.11180 2.16759 2.39755 2.75301 3.41199 3.66780 3.70398 3.97702 4.15276 4.26197 4.32203 4.38801 4.41463 4.45481 4.59651 4.72331 4.82067 4.90236 4.93970 5.00494 5.03116 5.05416 5.15423 5.24476 5.25484 5.42121 5.46959 5.57440 5.67262 5.78707 5.93073 6.01087 6.19154 6.53075 6.74578 6.75683 6.87337 6.88700 7.47496 8.10956 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.003592 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.154212 B = 7792.887421 C = 7968.464059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.147 3.853 5 H 0.079 0.921 6 C 0.069 3.931 7 O -0.575 6.575 8 N -0.710 5.710 9 C 0.572 3.428 10 O -0.609 6.609 11 C -0.297 4.297 12 C -0.046 4.046 13 C -0.208 4.208 14 C 0.105 3.895 15 C -0.478 4.478 16 H 0.093 0.907 17 C 0.042 3.958 18 N -0.794 5.794 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.265 1.265 22 H -0.250 1.250 23 C -0.248 4.248 24 C -0.035 4.035 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.297 0.703 39 H 0.115 0.885 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 1.836 -8.596 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.097 0.903 6 C -0.010 4.010 7 O -0.383 6.383 8 N -0.361 5.361 9 C 0.365 3.635 10 O -0.494 6.494 11 C -0.302 4.302 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.102 3.898 15 C -0.504 4.504 16 H 0.111 0.889 17 C -0.179 4.179 18 N -0.416 5.416 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.173 1.173 23 C -0.267 4.267 24 C -0.053 4.053 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.242 0.758 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.856 2.135 -7.836 14.371 hybrid contribution 0.811 -0.637 0.558 1.173 sum -11.045 1.498 -7.277 13.312 Atomic orbital electron populations 1.21795 0.92776 1.02561 1.02605 1.21229 0.97450 0.95727 0.96512 1.21856 1.00868 0.95617 1.02201 1.21220 0.80018 0.94557 0.99921 0.90291 1.22528 0.98878 0.93719 0.85833 1.86412 1.82927 1.30999 1.37967 1.45715 1.07152 1.74669 1.08566 1.18391 0.87722 0.74285 0.83072 1.90599 1.69582 1.54232 1.35006 1.19171 0.91406 1.24764 0.94826 1.20509 0.94101 0.95641 0.96255 1.20724 0.92693 1.11346 0.97925 1.18079 0.94105 0.86093 0.91520 1.20112 0.91977 1.30105 1.08253 0.88897 1.26995 1.04656 0.92308 0.93955 1.69830 1.40814 1.14278 1.16716 0.85159 0.75610 0.79125 0.79764 1.18764 1.18963 1.17317 1.20916 0.94286 1.14689 0.96827 1.20668 0.93895 0.94786 0.95981 0.91830 0.92589 0.90898 0.89779 0.93484 0.90742 0.93335 0.96053 0.90346 0.75782 0.75770 0.89011 0.88863 0.89155 0.86745 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.85 71.98 0.64 -1.56 16 2 C -0.09 -1.85 2.39 -10.79 -0.03 -1.87 16 3 C -0.15 -3.03 9.00 71.98 0.65 -2.38 16 4 C 0.15 4.02 1.95 45.00 0.09 4.11 16 5 H 0.08 2.41 7.58 -2.39 -0.02 2.40 16 6 C 0.07 1.71 6.42 71.98 0.46 2.17 16 7 O -0.58 -12.85 12.64 -148.98 -1.88 -14.73 16 8 N -0.71 -23.40 4.25 -445.60 -1.89 -25.30 16 9 C 0.57 24.66 7.73 86.73 0.67 25.33 16 10 O -0.61 -29.77 15.98 -3.98 -0.06 -29.83 16 11 C -0.30 -13.94 5.89 -19.93 -0.12 -14.06 16 12 C -0.05 -2.36 9.52 22.25 0.21 -2.15 16 13 C -0.21 -11.16 8.68 22.47 0.19 -10.96 16 14 C 0.11 5.53 5.54 -21.28 -0.12 5.41 16 15 C -0.48 -24.28 8.98 23.46 0.21 -24.07 16 16 H 0.09 4.44 7.97 -2.91 -0.02 4.42 16 17 C 0.04 1.98 4.90 85.35 0.42 2.40 16 18 N -0.79 -39.95 11.61 21.87 0.25 -39.70 16 19 Si 0.98 35.52 29.63 68.60 2.03 37.55 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 21 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 22 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 23 C -0.25 -11.59 9.73 22.47 0.22 -11.37 16 24 C -0.03 -1.47 9.47 22.25 0.21 -1.26 16 25 H 0.06 0.92 6.79 -2.39 -0.02 0.91 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.77 7.43 -2.38 -0.02 1.75 16 29 H 0.05 1.07 7.23 -2.39 -0.02 1.06 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 1.47 6.89 -2.39 -0.02 1.46 16 34 H 0.39 5.43 9.12 -74.06 -0.68 4.76 16 35 H 0.41 12.05 6.18 -92.71 -0.57 11.48 16 36 H 0.09 4.74 7.63 -2.91 -0.02 4.72 16 37 H 0.09 5.16 6.56 -2.91 -0.02 5.14 16 38 H 0.30 13.34 8.29 -92.71 -0.77 12.57 16 39 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.13 4.36 6.37 -2.91 -0.02 4.34 16 Total: -1.00 -64.76 331.29 1.97 -62.80 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.19 Total: 39.49 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 3.71 Total: -30.28 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.64 Total: -65.00 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.95 Total: -44.56 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Total: -64.76 1.97 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272222567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.516 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds