Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46993 * 2 1 4 4 C 1.52994 * 109.46947 * 299.99927 * 3 2 1 5 5 C 1.53003 * 109.47015 * 60.00106 * 3 2 1 6 6 O 1.42897 * 109.47076 * 64.99851 * 5 3 2 7 7 N 1.46495 * 109.47010 * 179.97438 * 3 2 1 8 8 C 1.34774 * 120.00222 * 179.97438 * 7 3 2 9 9 O 1.21584 * 119.99838 * 0.02562 * 8 7 3 10 10 C 1.47637 * 120.00661 * 179.97438 * 8 7 3 11 11 C 1.40022 * 119.89301 * 359.72848 * 10 8 7 12 12 C 1.36321 * 120.10721 * 179.71110 * 11 10 8 13 13 C 1.40881 * 119.88774 * 0.56202 * 12 11 10 14 14 C 1.41115 * 120.10266 * 179.68967 * 13 12 11 15 15 H 1.07994 * 120.00633 * 204.64537 * 14 13 12 16 16 C 1.40230 * 119.99655 * 24.65081 * 14 13 12 17 17 N 1.30645 * 119.99785 * 17.87187 * 16 14 13 18 18 Si 1.86794 * 120.00113 * 197.87288 * 16 14 13 19 19 H 1.48513 * 109.47054 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47424 * 119.99698 * 18 16 14 21 21 H 1.48502 * 109.47390 * 239.99956 * 18 16 14 22 22 C 1.40895 * 119.79847 * 359.71565 * 13 12 11 23 23 C 1.36312 * 119.88977 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.47229 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.47312 * 60.00038 * 1 2 3 26 26 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47229 * 240.00193 * 2 1 3 28 28 H 1.09000 * 109.47312 * 119.99962 * 2 1 3 29 29 H 1.09000 * 109.47373 * 299.99867 * 4 3 2 30 30 H 1.09005 * 109.47239 * 60.00656 * 4 3 2 31 31 H 1.09008 * 109.46904 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.46982 * 185.00027 * 5 3 2 33 33 H 1.08998 * 109.46968 * 305.00206 * 5 3 2 34 34 H 0.96701 * 114.00290 * 180.02562 * 6 5 3 35 35 H 0.97000 * 120.00341 * 0.02562 * 7 3 2 36 36 H 1.07997 * 119.94443 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.05186 * 180.25091 * 12 11 10 38 38 H 0.97005 * 119.99884 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.05295 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.94551 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 1.5300 2.1638 1.2493 6 8 2.0998 1.5614 2.4131 7 7 3.5049 1.4426 0.0006 8 6 4.1788 2.6097 0.0002 9 8 3.5709 3.6627 -0.0002 10 6 5.6552 2.6099 0.0014 11 6 6.3532 1.3960 0.0087 12 6 7.7163 1.3910 0.0039 13 6 8.4229 2.6098 0.0035 14 6 9.8340 2.6099 0.0052 15 1 10.3736 3.4603 0.3949 16 6 10.5357 1.5057 -0.4995 17 7 9.9306 0.6463 -1.2754 18 14 12.3356 1.2635 -0.0623 19 1 12.7823 2.3674 0.8252 20 1 12.5043 -0.0342 0.6396 21 1 13.1510 1.2647 -1.3034 22 6 7.7162 3.8288 0.0021 23 6 6.3531 3.8237 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 1.6500 -2.1392 30 1 0.4399 2.1638 -1.2492 31 1 1.8937 3.1914 -1.2494 32 1 1.8183 3.2140 1.2056 33 1 0.4437 2.0868 1.2952 34 1 1.8194 1.9686 3.2441 35 1 3.9900 0.6026 0.0006 36 1 5.8106 0.4622 0.0130 37 1 8.2537 0.4542 0.0055 38 1 10.4159 -0.1178 -1.6242 39 1 8.2536 4.7655 0.0022 40 1 5.8105 4.7575 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272772066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = -81.607702 kcal Electronic energy + Delta-G solvation = -21565.297440 eV Core-core repulsion = 18344.140323 eV Total energy + Delta-G solvation = -3221.157117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75773 -37.74500 -36.59279 -35.15758 -33.83308 -32.43616 -30.26420 -29.40026 -28.93866 -26.11065 -25.73845 -24.31626 -21.92084 -20.94079 -19.62352 -18.91765 -17.49633 -17.15913 -17.01659 -15.66289 -15.44508 -14.82477 -14.73330 -14.20834 -13.94878 -13.59588 -13.18528 -13.01398 -12.86361 -12.57285 -12.20485 -12.08788 -12.06005 -11.84751 -11.74073 -11.56926 -11.32414 -11.22767 -10.91595 -10.78723 -10.61682 -10.43692 -9.99875 -9.77927 -9.52713 -9.31296 -8.68978 -8.46569 -7.67626 -7.49858 -7.00410 -4.56663 2.28358 2.92729 2.96992 3.02535 3.07537 3.76365 3.78274 3.92576 4.39684 4.60873 4.80568 4.95779 5.24333 5.33585 5.44511 5.54134 5.61775 5.64542 5.78782 5.91479 5.93611 6.01579 6.08948 6.11277 6.20381 6.30993 6.35464 6.53950 6.80386 6.86092 7.04318 7.15998 7.18099 7.47636 7.70335 7.78529 7.85079 7.90107 8.10877 8.36095 8.43894 8.66846 8.79352 9.18108 9.91716 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.003859 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.930964 B = 7254.642008 C = 7579.878778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.184 3.816 4 C -0.165 4.165 5 C 0.062 3.938 6 O -0.564 6.564 7 N -0.725 5.725 8 C 0.579 3.421 9 O -0.578 6.578 10 C -0.282 4.282 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.773 5.773 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.023 4.023 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.372 0.628 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 -3.392 2.160 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.097 3.903 4 C -0.223 4.223 5 C -0.017 4.017 6 O -0.368 6.368 7 N -0.376 5.376 8 C 0.374 3.626 9 O -0.461 6.461 10 C -0.286 4.286 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.146 4.146 17 N -0.396 5.396 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.259 4.259 23 C -0.042 4.042 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.740 -3.259 1.546 12.282 hybrid contribution 0.762 -0.335 0.458 0.950 sum -10.979 -3.595 2.004 11.725 Atomic orbital electron populations 1.21846 0.95150 1.01714 1.02057 1.21715 0.96430 0.95357 1.02790 1.20181 0.81369 0.95171 0.93583 1.22241 1.00464 1.03221 0.96399 1.22725 0.95420 0.98137 0.85403 1.86480 1.73366 1.61096 1.15890 1.45845 1.05038 1.09256 1.77490 1.18465 0.88027 0.82448 0.73655 1.90537 1.70469 1.31738 1.53362 1.18941 0.90119 0.94473 1.25065 1.20487 0.94834 0.94698 0.98070 1.20968 0.92406 0.98712 1.07693 1.17783 0.93278 0.91094 0.85328 1.19866 0.91697 1.01882 1.33777 0.89741 1.26089 1.01548 0.94557 0.92440 1.69757 1.38990 1.10362 1.20512 0.86186 0.81075 0.79635 0.79521 1.18079 1.19408 1.19702 1.20710 0.93221 0.97138 1.14825 1.20347 0.93809 0.95703 0.94365 0.92410 0.92288 0.92594 0.91527 0.90700 0.92200 0.92114 0.89924 0.91361 0.93734 0.78230 0.76830 0.89386 0.86260 0.90347 0.88479 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.21 37.16 0.34 -1.08 16 2 C -0.13 -1.48 5.00 -26.73 -0.13 -1.61 16 3 C 0.18 2.68 0.61 -131.82 -0.08 2.60 16 4 C -0.17 -2.32 8.05 37.15 0.30 -2.02 16 5 C 0.06 0.88 5.42 37.16 0.20 1.09 16 6 O -0.56 -8.16 12.95 -35.23 -0.46 -8.61 16 7 N -0.72 -12.71 4.82 -48.60 -0.23 -12.95 16 8 C 0.58 12.39 7.18 -12.42 -0.09 12.30 16 9 O -0.58 -13.22 12.58 5.29 0.07 -13.15 16 10 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 11 C -0.06 -1.41 9.47 -39.60 -0.38 -1.78 16 12 C -0.18 -4.47 8.63 -39.27 -0.34 -4.81 16 13 C 0.13 3.32 5.58 -106.80 -0.60 2.73 16 14 C -0.44 -11.23 9.04 -37.74 -0.34 -11.57 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 16 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 17 N -0.77 -18.75 10.95 55.56 0.61 -18.15 16 18 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 23 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 24 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 25 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 31 H 0.08 1.40 6.16 -51.92 -0.32 1.08 16 32 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 33 H 0.04 0.52 6.17 -51.93 -0.32 0.20 16 34 H 0.37 3.78 9.12 45.56 0.42 4.20 16 35 H 0.40 6.55 6.47 -40.82 -0.26 6.29 16 36 H 0.09 1.74 6.37 -52.49 -0.33 1.41 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 38 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -29.10 320.81 -7.31 -36.40 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -4.52 Total: 16.07 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.58 Total: -16.89 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.37 Total: -31.10 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.39 Total: -21.77 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.10 -7.31 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272772066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.204 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds