Wall clock time and date at job start Mon Mar 30 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46993 * 2 1 4 4 C 1.52994 * 109.46947 * 299.99927 * 3 2 1 5 5 C 1.53003 * 109.47015 * 60.00106 * 3 2 1 6 6 O 1.42897 * 109.47076 * 64.99851 * 5 3 2 7 7 N 1.46495 * 109.47010 * 179.97438 * 3 2 1 8 8 C 1.34774 * 120.00222 * 179.97438 * 7 3 2 9 9 O 1.21584 * 119.99838 * 0.02562 * 8 7 3 10 10 C 1.47637 * 120.00661 * 179.97438 * 8 7 3 11 11 C 1.40022 * 119.89301 * 359.72848 * 10 8 7 12 12 C 1.36321 * 120.10721 * 179.71110 * 11 10 8 13 13 C 1.40881 * 119.88774 * 0.56202 * 12 11 10 14 14 C 1.41115 * 120.10266 * 179.68967 * 13 12 11 15 15 H 1.07994 * 120.00633 * 204.64537 * 14 13 12 16 16 C 1.40230 * 119.99655 * 24.65081 * 14 13 12 17 17 N 1.30645 * 119.99785 * 17.87187 * 16 14 13 18 18 Si 1.86794 * 120.00113 * 197.87288 * 16 14 13 19 19 H 1.48513 * 109.47054 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47424 * 119.99698 * 18 16 14 21 21 H 1.48502 * 109.47390 * 239.99956 * 18 16 14 22 22 C 1.40895 * 119.79847 * 359.71565 * 13 12 11 23 23 C 1.36312 * 119.88977 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.47229 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.47312 * 60.00038 * 1 2 3 26 26 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47229 * 240.00193 * 2 1 3 28 28 H 1.09000 * 109.47312 * 119.99962 * 2 1 3 29 29 H 1.09000 * 109.47373 * 299.99867 * 4 3 2 30 30 H 1.09005 * 109.47239 * 60.00656 * 4 3 2 31 31 H 1.09008 * 109.46904 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.46982 * 185.00027 * 5 3 2 33 33 H 1.08998 * 109.46968 * 305.00206 * 5 3 2 34 34 H 0.96701 * 114.00290 * 180.02562 * 6 5 3 35 35 H 0.97000 * 120.00341 * 0.02562 * 7 3 2 36 36 H 1.07997 * 119.94443 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.05186 * 180.25091 * 12 11 10 38 38 H 0.97005 * 119.99884 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.05295 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.94551 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 1.5300 2.1638 1.2493 6 8 2.0998 1.5614 2.4131 7 7 3.5049 1.4426 0.0006 8 6 4.1788 2.6097 0.0002 9 8 3.5709 3.6627 -0.0002 10 6 5.6552 2.6099 0.0014 11 6 6.3532 1.3960 0.0087 12 6 7.7163 1.3910 0.0039 13 6 8.4229 2.6098 0.0035 14 6 9.8340 2.6099 0.0052 15 1 10.3736 3.4603 0.3949 16 6 10.5357 1.5057 -0.4995 17 7 9.9306 0.6463 -1.2754 18 14 12.3356 1.2635 -0.0623 19 1 12.7823 2.3674 0.8252 20 1 12.5043 -0.0342 0.6396 21 1 13.1510 1.2647 -1.3034 22 6 7.7162 3.8288 0.0021 23 6 6.3531 3.8237 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 1.6500 -2.1392 30 1 0.4399 2.1638 -1.2492 31 1 1.8937 3.1914 -1.2494 32 1 1.8183 3.2140 1.2056 33 1 0.4437 2.0868 1.2952 34 1 1.8194 1.9686 3.2441 35 1 3.9900 0.6026 0.0006 36 1 5.8106 0.4622 0.0130 37 1 8.2537 0.4542 0.0055 38 1 10.4159 -0.1178 -1.6242 39 1 8.2536 4.7655 0.0022 40 1 5.8105 4.7575 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272772066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:38 Heat of formation + Delta-G solvation = -100.992949 kcal Electronic energy + Delta-G solvation = -21566.138048 eV Core-core repulsion = 18344.140323 eV Total energy + Delta-G solvation = -3221.997725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22453 -39.38236 -38.13567 -36.31871 -35.65592 -33.82959 -31.90665 -31.28558 -30.15716 -27.69690 -27.05455 -25.41953 -23.58967 -22.80532 -21.15798 -20.26653 -19.35943 -18.53310 -18.26596 -17.21586 -16.97557 -16.16005 -15.86762 -15.73636 -15.66157 -15.07238 -14.97114 -14.49211 -14.02742 -13.97955 -13.73459 -13.63337 -13.25062 -13.15939 -12.94217 -12.88017 -12.79738 -12.68293 -12.54960 -12.35810 -11.75277 -11.69877 -11.49023 -11.36862 -11.11278 -10.95038 -10.28825 -9.93829 -9.56747 -9.39056 -8.78825 -6.47657 0.47229 1.14975 1.38594 1.42474 1.55355 2.15155 2.20209 2.40600 2.81258 3.34848 3.69855 3.78117 3.95673 4.27175 4.27749 4.33131 4.38354 4.45345 4.51280 4.69443 4.71382 4.74958 4.84149 4.91998 5.02506 5.04719 5.11597 5.16684 5.20030 5.30630 5.35146 5.49551 5.59178 5.75570 5.84540 5.96822 6.00378 6.23144 6.54637 6.77389 6.80269 6.87225 6.90240 7.54366 8.16802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.003859 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.930964 B = 7254.642008 C = 7579.878778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.172 3.828 4 C -0.161 4.161 5 C 0.065 3.935 6 O -0.580 6.580 7 N -0.713 5.713 8 C 0.578 3.422 9 O -0.596 6.596 10 C -0.292 4.292 11 C -0.055 4.055 12 C -0.198 4.198 13 C 0.101 3.899 14 C -0.476 4.476 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.800 5.800 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.263 1.263 22 C -0.254 4.254 23 C -0.033 4.033 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.389 0.611 35 H 0.401 0.599 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.297 0.703 39 H 0.103 0.897 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.512 -4.937 2.276 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.087 3.913 4 C -0.219 4.219 5 C -0.014 4.014 6 O -0.387 6.387 7 N -0.364 5.364 8 C 0.371 3.629 9 O -0.481 6.481 10 C -0.297 4.297 11 C -0.074 4.074 12 C -0.217 4.217 13 C 0.098 3.902 14 C -0.503 4.503 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.423 5.423 18 Si 0.808 3.192 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.188 1.188 22 C -0.273 4.273 23 C -0.053 4.053 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.237 0.763 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.661 -4.820 1.669 13.650 hybrid contribution 0.917 0.146 0.417 1.017 sum -11.744 -4.674 2.085 12.811 Atomic orbital electron populations 1.21843 0.92994 1.03001 1.02596 1.21682 0.98172 0.92930 1.02812 1.20562 0.79269 0.97416 0.94095 1.22193 1.02435 1.01038 0.96204 1.22666 0.97224 0.96144 0.85347 1.86429 1.73979 1.61445 1.16872 1.45810 1.06681 1.08118 1.75770 1.18232 0.87321 0.83346 0.74008 1.90536 1.70583 1.32686 1.54253 1.19291 0.91713 0.94372 1.24285 1.20716 0.94280 0.95850 0.96578 1.20996 0.93296 0.98195 1.09250 1.18127 0.94160 0.91779 0.86133 1.20128 0.91882 1.03199 1.35129 0.89741 1.26930 1.05990 0.93573 0.91589 1.69774 1.41066 1.10842 1.20663 0.85064 0.75130 0.79649 0.79390 1.18059 1.18451 1.18762 1.20856 0.93653 0.97312 1.15479 1.20498 0.93779 0.96420 0.94562 0.92135 0.91420 0.91039 0.90846 0.91369 0.92014 0.88986 0.93146 0.94506 0.90465 0.76213 0.76262 0.86407 0.86965 0.89226 0.87837 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.21 71.98 0.66 -1.58 16 2 C -0.12 -2.46 5.00 30.60 0.15 -2.30 16 3 C 0.17 4.70 0.61 3.61 0.00 4.71 16 4 C -0.16 -4.25 8.05 71.98 0.58 -3.67 16 5 C 0.06 1.75 5.42 71.98 0.39 2.14 16 6 O -0.58 -15.83 12.95 -148.98 -1.93 -17.76 16 7 N -0.71 -24.30 4.82 -425.95 -2.05 -26.35 16 8 C 0.58 24.72 7.18 86.73 0.62 25.34 16 9 O -0.60 -27.59 12.58 -3.98 -0.05 -27.64 16 10 C -0.29 -13.78 5.89 -19.93 -0.12 -13.90 16 11 C -0.06 -2.53 9.47 22.26 0.21 -2.32 16 12 C -0.20 -10.10 8.63 22.47 0.19 -9.91 16 13 C 0.10 5.39 5.58 -21.28 -0.12 5.27 16 14 C -0.48 -24.57 9.04 23.46 0.21 -24.36 16 15 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 16 C 0.04 1.79 5.14 85.35 0.44 2.23 16 17 N -0.80 -38.92 10.95 21.87 0.24 -38.68 16 18 Si 0.99 35.36 29.60 68.60 2.03 37.39 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 C -0.25 -12.90 9.73 22.47 0.22 -12.68 16 23 C -0.03 -1.64 9.52 22.25 0.21 -1.43 16 24 H 0.06 0.90 6.32 -2.39 -0.02 0.88 16 25 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.53 7.82 -2.39 -0.02 1.52 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.81 6.43 -2.38 -0.02 1.80 16 31 H 0.05 1.68 6.16 -2.38 -0.01 1.67 16 32 H 0.04 1.23 6.32 -2.39 -0.02 1.22 16 33 H 0.08 1.57 6.17 -2.39 -0.01 1.56 16 34 H 0.39 7.31 9.12 -74.06 -0.68 6.63 16 35 H 0.40 12.68 6.47 -92.71 -0.60 12.08 16 36 H 0.12 4.54 6.37 -2.91 -0.02 4.53 16 37 H 0.11 5.80 6.16 -2.91 -0.02 5.78 16 38 H 0.30 12.76 8.29 -92.70 -0.77 11.99 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.90 7.63 -2.91 -0.02 4.88 16 Total: -1.00 -63.68 320.81 1.70 -61.98 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.20 Total: 43.53 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.66 Total: -32.47 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -1.81 Total: -65.03 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.98 Total: -45.40 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -63.68 1.70 -61.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272772066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.017 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds