Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 C 1.53004 * 109.46985 * 59.99936 * 3 2 1 5 5 C 1.53001 * 109.46935 * 300.00240 * 3 2 1 6 6 O 1.42901 * 109.46812 * 299.99730 * 5 3 2 7 7 N 1.46502 * 109.47318 * 180.02562 * 3 2 1 8 8 C 1.34775 * 119.99870 * 179.97438 * 7 3 2 9 9 O 1.21579 * 120.00319 * 0.02562 * 8 7 3 10 10 C 1.47646 * 119.99569 * 180.02562 * 8 7 3 11 11 C 1.40011 * 119.89879 * 359.72118 * 10 8 7 12 12 C 1.36312 * 120.10679 * 179.75820 * 11 10 8 13 13 C 1.40888 * 119.89081 * 0.52070 * 12 11 10 14 14 C 1.41111 * 120.10352 * 179.71995 * 13 12 11 15 15 H 1.07998 * 119.99841 * 204.65411 * 14 13 12 16 16 C 1.40228 * 120.00281 * 24.64631 * 14 13 12 17 17 N 1.30649 * 119.99656 * 17.86941 * 16 14 13 18 18 Si 1.86794 * 120.00376 * 197.86821 * 16 14 13 19 19 H 1.48501 * 109.46985 * 60.00290 * 18 16 14 20 20 H 1.48496 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46979 * 300.00106 * 18 16 14 22 22 C 1.40882 * 119.79465 * 359.73481 * 13 12 11 23 23 C 1.36319 * 119.89152 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.47006 * 59.99754 * 1 2 3 25 25 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46646 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.47006 * 120.00246 * 2 1 3 28 28 H 1.09002 * 109.47149 * 239.99897 * 2 1 3 29 29 H 1.09006 * 109.46771 * 60.00436 * 4 3 2 30 30 H 1.09004 * 109.46569 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46982 * 299.99969 * 4 3 2 32 32 H 1.08999 * 109.47559 * 59.99708 * 5 3 2 33 33 H 1.08998 * 109.46710 * 180.02562 * 5 3 2 34 34 H 0.96701 * 113.99504 * 180.02562 * 6 5 3 35 35 H 0.97003 * 120.00039 * 359.97438 * 7 3 2 36 36 H 1.08004 * 119.94266 * 0.03304 * 11 10 8 37 37 H 1.08000 * 120.05436 * 180.24040 * 12 11 10 38 38 H 0.97004 * 119.99907 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.05430 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.94408 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 8 2.0064 1.4900 -2.4160 7 7 3.5051 1.4424 -0.0006 8 6 4.1790 2.6096 -0.0012 9 8 3.5711 3.6625 -0.0008 10 6 5.6554 2.6095 -0.0024 11 6 6.3532 1.3957 0.0030 12 6 7.7163 1.3906 -0.0031 13 6 8.4230 2.6095 -0.0037 14 6 9.8341 2.6095 -0.0040 15 1 10.3742 3.4596 0.3857 16 6 10.5352 1.5055 -0.5101 17 7 9.9290 0.6464 -1.2856 18 14 12.3356 1.2632 -0.0755 19 1 12.4762 1.1329 1.3971 20 1 12.8417 0.0308 -0.7314 21 1 13.1202 2.4329 -0.5462 22 6 7.7164 3.8283 -0.0037 23 6 6.3533 3.8233 -0.0026 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8935 1.6498 2.1393 30 1 1.8939 3.1912 1.2494 31 1 0.4401 2.1637 1.2492 32 1 0.4400 2.1637 -1.2493 33 1 1.8938 3.1912 -1.2494 34 1 1.7213 1.8938 -3.2471 35 1 3.9901 0.6023 -0.0006 36 1 5.8106 0.4619 0.0075 37 1 8.2538 0.4538 -0.0028 38 1 10.4141 -0.1171 -1.6361 39 1 8.2539 4.7651 -0.0038 40 1 5.8107 4.7572 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272772069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = -82.124885 kcal Electronic energy + Delta-G solvation = -21561.455048 eV Core-core repulsion = 18340.275504 eV Total energy + Delta-G solvation = -3221.179544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76775 -37.74885 -36.60561 -35.13875 -33.83756 -32.43312 -30.26850 -29.40394 -28.94305 -26.11383 -25.73253 -24.30790 -21.92397 -20.94518 -19.62560 -18.92075 -17.49754 -17.14830 -17.01523 -15.67957 -15.44976 -14.83282 -14.68788 -14.23791 -13.95023 -13.58752 -13.19073 -13.02602 -12.84299 -12.59398 -12.19146 -12.07417 -12.02726 -11.86762 -11.78082 -11.55777 -11.28443 -11.23233 -10.97012 -10.77933 -10.61085 -10.42147 -10.03901 -9.78280 -9.51971 -9.31004 -8.69541 -8.47567 -7.68119 -7.50374 -7.00285 -4.57137 2.28421 2.94257 2.95922 3.00094 3.07126 3.75900 3.78229 3.91808 4.38615 4.60259 4.82884 4.97401 5.25610 5.34487 5.45425 5.54873 5.61383 5.65196 5.79119 5.91226 5.93934 6.01633 6.09902 6.10967 6.21824 6.31336 6.35065 6.53583 6.79995 6.85734 7.03844 7.15431 7.17739 7.46945 7.69878 7.79105 7.84520 7.89304 8.10494 8.35053 8.43191 8.66279 8.78948 9.16695 9.91750 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.003867 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.622922 B = 7239.146914 C = 7580.527023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.184 3.816 4 C -0.165 4.165 5 C 0.061 3.939 6 O -0.565 6.565 7 N -0.726 5.726 8 C 0.578 3.422 9 O -0.578 6.578 10 C -0.283 4.283 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.129 3.871 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.772 5.772 18 Si 0.913 3.087 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.240 4.240 23 C -0.023 4.023 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.372 0.628 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 -3.355 1.034 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.097 3.903 4 C -0.223 4.223 5 C -0.018 4.018 6 O -0.369 6.369 7 N -0.377 5.377 8 C 0.373 3.627 9 O -0.461 6.461 10 C -0.287 4.287 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.126 3.874 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.395 5.395 18 Si 0.737 3.263 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.259 4.259 23 C -0.042 4.042 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.218 0.782 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.628 -3.237 1.339 12.144 hybrid contribution 0.781 -0.303 -0.399 0.928 sum -10.848 -3.540 0.939 11.449 Atomic orbital electron populations 1.21828 0.95155 1.01677 1.02012 1.21695 0.96436 0.95317 1.02758 1.20180 0.81278 0.95263 0.93576 1.22235 1.00480 1.03194 0.96369 1.22723 0.96383 0.97325 0.85338 1.86475 1.77888 1.56859 1.15726 1.45875 1.05102 1.09268 1.77496 1.18482 0.88052 0.82446 0.73685 1.90535 1.70465 1.31736 1.53354 1.18936 0.90099 0.94485 1.25175 1.20482 0.94839 0.94692 0.98076 1.20969 0.92408 0.98709 1.07702 1.17770 0.93249 0.91099 0.85318 1.19809 0.91708 1.01910 1.33865 0.89803 1.26089 1.01547 0.94553 0.92445 1.69744 1.39140 1.10374 1.20289 0.86268 0.81073 0.78752 0.80203 1.18501 1.20068 1.18689 1.20708 0.93219 0.97132 1.14865 1.20350 0.93808 0.95698 0.94339 0.92412 0.92630 0.92369 0.91636 0.90590 0.92231 0.89938 0.92106 0.93770 0.91186 0.78179 0.76804 0.89380 0.86258 0.90210 0.88479 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 37.16 0.34 -1.10 16 2 C -0.12 -1.48 4.96 -26.73 -0.13 -1.61 16 3 C 0.18 2.68 0.62 -131.82 -0.08 2.60 16 4 C -0.16 -2.29 8.05 37.16 0.30 -1.99 16 5 C 0.06 0.88 5.38 37.16 0.20 1.08 16 6 O -0.57 -8.24 12.85 -35.23 -0.45 -8.69 16 7 N -0.73 -12.71 4.92 -48.60 -0.24 -12.95 16 8 C 0.58 12.34 7.18 -12.42 -0.09 12.25 16 9 O -0.58 -13.17 12.53 5.30 0.07 -13.11 16 10 C -0.28 -6.58 5.89 -104.73 -0.62 -7.19 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.46 8.64 -39.27 -0.34 -4.80 16 13 C 0.13 3.33 5.58 -106.80 -0.60 2.74 16 14 C -0.45 -11.22 9.04 -37.75 -0.34 -11.57 16 15 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 16 C 0.07 1.77 5.14 -17.31 -0.09 1.68 16 17 N -0.77 -18.78 10.95 55.56 0.61 -18.17 16 18 Si 0.91 17.45 29.60 -169.99 -5.03 12.42 16 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 C -0.24 -5.89 9.73 -39.27 -0.38 -6.28 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.38 6.16 -51.93 -0.32 1.06 16 31 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 32 H 0.04 0.53 6.43 -51.93 -0.33 0.19 16 33 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 34 H 0.37 3.85 9.12 45.56 0.42 4.27 16 35 H 0.40 6.54 6.47 -40.82 -0.26 6.28 16 36 H 0.09 1.74 6.37 -52.48 -0.33 1.40 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 38 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 40 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -28.98 320.73 -7.31 -36.29 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -4.52 Total: 16.26 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.58 Total: -16.89 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.37 Total: -31.12 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.39 Total: -21.80 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.98 -7.31 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272772069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.833 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds