Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 C 1.53004 * 109.46985 * 59.99936 * 3 2 1 5 5 C 1.53001 * 109.46935 * 300.00240 * 3 2 1 6 6 O 1.42901 * 109.46812 * 299.99730 * 5 3 2 7 7 N 1.46502 * 109.47318 * 180.02562 * 3 2 1 8 8 C 1.34775 * 119.99870 * 179.97438 * 7 3 2 9 9 O 1.21579 * 120.00319 * 0.02562 * 8 7 3 10 10 C 1.47646 * 119.99569 * 180.02562 * 8 7 3 11 11 C 1.40011 * 119.89879 * 359.72118 * 10 8 7 12 12 C 1.36312 * 120.10679 * 179.75820 * 11 10 8 13 13 C 1.40888 * 119.89081 * 0.52070 * 12 11 10 14 14 C 1.41111 * 120.10352 * 179.71995 * 13 12 11 15 15 H 1.07998 * 119.99841 * 204.65411 * 14 13 12 16 16 C 1.40228 * 120.00281 * 24.64631 * 14 13 12 17 17 N 1.30649 * 119.99656 * 17.86941 * 16 14 13 18 18 Si 1.86794 * 120.00376 * 197.86821 * 16 14 13 19 19 H 1.48501 * 109.46985 * 60.00290 * 18 16 14 20 20 H 1.48496 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46979 * 300.00106 * 18 16 14 22 22 C 1.40882 * 119.79465 * 359.73481 * 13 12 11 23 23 C 1.36319 * 119.89152 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.47006 * 59.99754 * 1 2 3 25 25 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46646 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.47006 * 120.00246 * 2 1 3 28 28 H 1.09002 * 109.47149 * 239.99897 * 2 1 3 29 29 H 1.09006 * 109.46771 * 60.00436 * 4 3 2 30 30 H 1.09004 * 109.46569 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46982 * 299.99969 * 4 3 2 32 32 H 1.08999 * 109.47559 * 59.99708 * 5 3 2 33 33 H 1.08998 * 109.46710 * 180.02562 * 5 3 2 34 34 H 0.96701 * 113.99504 * 180.02562 * 6 5 3 35 35 H 0.97003 * 120.00039 * 359.97438 * 7 3 2 36 36 H 1.08004 * 119.94266 * 0.03304 * 11 10 8 37 37 H 1.08000 * 120.05436 * 180.24040 * 12 11 10 38 38 H 0.97004 * 119.99907 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.05430 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.94408 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 8 2.0064 1.4900 -2.4160 7 7 3.5051 1.4424 -0.0006 8 6 4.1790 2.6096 -0.0012 9 8 3.5711 3.6625 -0.0008 10 6 5.6554 2.6095 -0.0024 11 6 6.3532 1.3957 0.0030 12 6 7.7163 1.3906 -0.0031 13 6 8.4230 2.6095 -0.0037 14 6 9.8341 2.6095 -0.0040 15 1 10.3742 3.4596 0.3857 16 6 10.5352 1.5055 -0.5101 17 7 9.9290 0.6464 -1.2856 18 14 12.3356 1.2632 -0.0755 19 1 12.4762 1.1329 1.3971 20 1 12.8417 0.0308 -0.7314 21 1 13.1202 2.4329 -0.5462 22 6 7.7164 3.8283 -0.0037 23 6 6.3533 3.8233 -0.0026 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8935 1.6498 2.1393 30 1 1.8939 3.1912 1.2494 31 1 0.4401 2.1637 1.2492 32 1 0.4400 2.1637 -1.2493 33 1 1.8938 3.1912 -1.2494 34 1 1.7213 1.8938 -3.2471 35 1 3.9901 0.6023 -0.0006 36 1 5.8106 0.4619 0.0075 37 1 8.2538 0.4538 -0.0028 38 1 10.4141 -0.1171 -1.6361 39 1 8.2539 4.7651 -0.0038 40 1 5.8107 4.7572 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272772069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = -101.418500 kcal Electronic energy + Delta-G solvation = -21562.291682 eV Core-core repulsion = 18340.275504 eV Total energy + Delta-G solvation = -3222.016178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23570 -39.38455 -38.14853 -36.31316 -35.65730 -33.82471 -31.90877 -31.28551 -30.16074 -27.69781 -27.05340 -25.41750 -23.59083 -22.80608 -21.16076 -20.26902 -19.35636 -18.54417 -18.25403 -17.21941 -16.99521 -16.15535 -15.87668 -15.75008 -15.66155 -15.05977 -14.95226 -14.47275 -14.06239 -13.97753 -13.79678 -13.54155 -13.28902 -13.19695 -12.89839 -12.84833 -12.77189 -12.68501 -12.61772 -12.32057 -11.78303 -11.69432 -11.49028 -11.36322 -11.11774 -10.95922 -10.29282 -9.94601 -9.56858 -9.39305 -8.78493 -6.47837 0.47329 1.14985 1.38780 1.44997 1.52258 2.14744 2.20055 2.40297 2.81124 3.33084 3.69745 3.79652 3.96247 4.26937 4.27382 4.32997 4.39025 4.45417 4.50783 4.69368 4.71804 4.74845 4.84825 4.91973 5.02366 5.04650 5.11516 5.16933 5.20519 5.30577 5.35678 5.50095 5.59014 5.75112 5.84431 5.96633 6.00127 6.23152 6.54342 6.77113 6.79676 6.86061 6.90120 7.53260 8.16716 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.003867 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.622922 B = 7239.146914 C = 7580.527023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.172 3.828 4 C -0.160 4.160 5 C 0.064 3.936 6 O -0.581 6.581 7 N -0.714 5.714 8 C 0.577 3.423 9 O -0.595 6.595 10 C -0.293 4.293 11 C -0.055 4.055 12 C -0.198 4.198 13 C 0.101 3.899 14 C -0.477 4.477 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.800 5.800 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.254 4.254 23 C -0.033 4.033 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.389 0.611 35 H 0.402 0.598 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 -4.848 1.244 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.087 3.913 4 C -0.218 4.218 5 C -0.015 4.015 6 O -0.388 6.388 7 N -0.365 5.365 8 C 0.370 3.630 9 O -0.480 6.480 10 C -0.297 4.297 11 C -0.074 4.074 12 C -0.218 4.218 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.104 0.896 16 C -0.181 4.181 17 N -0.423 5.423 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.188 1.188 21 H -0.182 1.182 22 C -0.273 4.273 23 C -0.052 4.052 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.238 0.762 35 H 0.238 0.762 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.541 -4.744 1.533 13.496 hybrid contribution 0.928 0.165 -0.511 1.072 sum -11.613 -4.579 1.022 12.525 Atomic orbital electron populations 1.21824 0.93033 1.02944 1.02535 1.21662 0.98151 0.92944 1.02758 1.20558 0.79208 0.97459 0.94082 1.22186 1.02404 1.01053 0.96143 1.22662 0.98086 0.95363 0.85380 1.86428 1.78444 1.57205 1.16692 1.45842 1.06720 1.08142 1.75793 1.18246 0.87342 0.83339 0.74035 1.90534 1.70573 1.32676 1.54218 1.19286 0.91690 0.94383 1.24371 1.20713 0.94284 0.95853 0.96583 1.21000 0.93305 0.98202 1.09250 1.18119 0.94144 0.91786 0.86125 1.20094 0.91909 1.03263 1.35182 0.89650 1.26936 1.06011 0.93559 0.91570 1.69770 1.41192 1.10851 1.20532 0.85150 0.75105 0.79064 0.79890 1.18207 1.18767 1.18245 1.20856 0.93655 0.97306 1.15502 1.20502 0.93778 0.96420 0.94534 0.92301 0.91100 0.91371 0.90755 0.91496 0.91830 0.93095 0.89041 0.90599 0.94466 0.76207 0.76233 0.86394 0.86962 0.89209 0.87822 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.21 71.98 0.66 -1.61 16 2 C -0.12 -2.47 4.96 30.59 0.15 -2.32 16 3 C 0.17 4.72 0.62 3.60 0.00 4.72 16 4 C -0.16 -4.16 8.05 71.98 0.58 -3.58 16 5 C 0.06 1.75 5.38 71.98 0.39 2.13 16 6 O -0.58 -16.02 12.85 -148.98 -1.91 -17.94 16 7 N -0.71 -24.27 4.92 -425.94 -2.10 -26.37 16 8 C 0.58 24.60 7.18 86.73 0.62 25.23 16 9 O -0.60 -27.45 12.53 -3.96 -0.05 -27.50 16 10 C -0.29 -13.77 5.89 -19.93 -0.12 -13.89 16 11 C -0.06 -2.53 9.47 22.25 0.21 -2.32 16 12 C -0.20 -10.09 8.64 22.47 0.19 -9.90 16 13 C 0.10 5.39 5.58 -21.28 -0.12 5.27 16 14 C -0.48 -24.57 9.04 23.46 0.21 -24.36 16 15 H 0.09 4.20 7.91 -2.91 -0.02 4.17 16 16 C 0.04 1.80 5.14 85.35 0.44 2.24 16 17 N -0.80 -39.05 10.95 21.87 0.24 -38.81 16 18 Si 0.99 35.29 29.60 68.60 2.03 37.32 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 20 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 C -0.25 -12.88 9.73 22.47 0.22 -12.66 16 23 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 24 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.55 7.68 -2.39 -0.02 1.53 16 29 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.05 1.67 6.16 -2.38 -0.01 1.66 16 31 H 0.09 1.78 6.43 -2.39 -0.02 1.76 16 32 H 0.08 1.59 6.43 -2.39 -0.02 1.58 16 33 H 0.04 1.28 6.16 -2.39 -0.01 1.26 16 34 H 0.39 7.48 9.12 -74.06 -0.68 6.81 16 35 H 0.40 12.65 6.47 -92.71 -0.60 12.05 16 36 H 0.12 4.53 6.37 -2.91 -0.02 4.52 16 37 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 38 H 0.30 12.90 8.29 -92.71 -0.77 12.13 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 40 H 0.10 4.90 7.63 -2.91 -0.02 4.87 16 Total: -1.00 -63.42 320.73 1.67 -61.75 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.20 Total: 44.01 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.66 Total: -32.46 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -1.86 Total: -65.18 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.96 Total: -45.44 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -63.42 1.67 -61.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272772069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.671 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds