Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99584 * 2 1 4 4 C 1.50701 * 109.46757 * 269.99779 * 3 2 1 5 5 H 1.08005 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00108 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99563 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00219 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46954 * 60.00461 * 8 6 4 10 10 H 1.48496 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00426 * 8 6 4 12 12 C 1.34769 * 120.00112 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99617 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00255 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47050 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47174 * 59.99926 * 15 14 12 17 17 O 1.42898 * 109.47168 * 299.99756 * 15 14 12 18 18 C 1.50706 * 109.46728 * 179.97438 * 15 14 12 19 19 C 1.38233 * 120.00109 * 329.72369 * 18 15 14 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 15 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.47008 * 270.00062 * 1 2 3 25 25 H 1.08997 * 109.47249 * 30.00375 * 1 2 3 26 26 H 1.08997 * 109.47087 * 150.00570 * 1 2 3 27 27 H 1.09001 * 109.47451 * 29.99518 * 3 2 1 28 28 H 1.09000 * 109.47020 * 150.00068 * 3 2 1 29 29 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47288 * 59.99937 * 14 12 2 31 31 H 1.09001 * 109.46749 * 299.99788 * 14 12 2 32 32 H 1.08997 * 109.46785 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47171 * 299.99740 * 16 15 14 34 34 H 1.09004 * 109.47223 * 60.00243 * 16 15 14 35 35 H 0.96705 * 113.99611 * 300.00224 * 17 15 14 36 36 H 1.08004 * 119.99934 * 0.02562 * 19 18 15 37 37 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 38 38 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 39 39 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1258 2.8781 -1.6729 7 7 3.5530 3.6182 -0.6734 8 14 3.4378 3.4168 -3.4341 9 1 2.1404 3.5935 -4.1348 10 1 4.1800 4.7030 -3.4342 11 1 4.2412 2.3821 -4.1334 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1670 0.0001 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6351 0.0018 16 6 3.2585 -3.5534 1.2517 17 8 3.2022 -3.5599 -1.1644 18 6 1.6263 -4.9403 0.0024 19 6 0.3851 -5.0215 0.6055 20 6 -0.3079 -6.2176 0.6022 21 6 0.2443 -7.3347 0.0039 22 6 1.4878 -7.2548 -0.5946 23 6 2.1789 -6.0576 -0.5953 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5137 27 1 1.6083 2.0285 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0298 4.4441 -0.8506 30 1 0.7591 -2.5302 -0.8897 31 1 0.7585 -2.5298 0.8903 32 1 3.9665 -4.3821 1.2528 33 1 3.8035 -2.6094 1.2516 34 1 2.6312 -3.6109 2.1412 35 1 2.7107 -3.6057 -1.9959 36 1 -0.0448 -4.1495 1.0759 37 1 -1.2796 -6.2800 1.0695 38 1 -0.2960 -8.2699 0.0037 39 1 1.9191 -8.1275 -1.0624 40 1 3.1506 -5.9953 -1.0625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272863616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -56.575198 kcal Electronic energy + Delta-G solvation = -21722.243076 eV Core-core repulsion = 18502.171450 eV Total energy + Delta-G solvation = -3220.071626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20951 -38.75141 -36.76100 -34.68258 -32.82143 -32.46895 -30.99080 -29.85072 -28.46204 -27.14566 -25.56242 -23.56056 -22.81673 -22.25650 -20.20630 -18.51702 -17.57961 -16.51967 -16.38886 -15.99708 -15.37040 -15.18394 -14.76299 -14.65193 -14.19091 -13.97836 -13.70811 -13.47087 -12.92143 -12.61276 -12.38510 -12.15053 -12.08609 -11.96460 -11.76963 -11.53868 -11.29572 -11.16493 -11.07379 -10.86306 -10.66639 -10.52994 -10.12020 -9.88042 -9.59302 -9.04397 -8.85446 -8.67256 -8.40514 -7.56994 -6.01420 -4.06008 1.20569 1.28019 3.33623 3.38239 3.40546 3.50653 3.65153 3.93351 4.39972 4.47571 4.63236 4.78932 4.86697 4.98701 5.00502 5.19904 5.30173 5.34193 5.40038 5.48736 5.62092 5.70324 5.82410 5.86378 5.91366 5.94719 6.05893 6.17969 6.21582 6.34313 6.38309 6.50215 6.71361 6.87730 7.09438 7.47985 7.59551 7.90131 7.95221 8.26926 8.47543 8.94078 9.18637 9.59090 11.06619 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004033 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.170502 B = 6941.587157 C = 7154.841706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.505 3.495 13 O -0.518 6.518 14 C -0.168 4.168 15 C 0.193 3.807 16 C -0.146 4.146 17 O -0.532 6.532 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.103 4.103 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.368 0.632 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 -19.051 2.653 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.291 3.709 13 O -0.394 6.394 14 C -0.208 4.208 15 C 0.151 3.849 16 C -0.203 4.203 17 O -0.336 6.336 18 C -0.110 4.110 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.121 4.121 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.215 0.785 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.355 -18.797 3.158 20.812 hybrid contribution -0.609 0.291 -1.415 1.568 sum -8.965 -18.506 1.744 20.637 Atomic orbital electron populations 1.21614 0.81789 1.02421 1.00228 1.48176 1.05950 1.07905 1.71902 1.19252 0.92507 0.78122 0.97394 1.21398 1.36503 1.06168 0.92329 0.92605 1.24933 0.95380 0.96411 0.97390 1.69921 1.38417 1.14376 1.30778 0.86564 0.78321 0.77819 0.84744 1.20314 1.21190 1.20149 1.20051 0.88202 0.84667 0.78001 1.90646 1.13467 1.86610 1.48712 1.22525 0.99525 0.94765 1.04012 1.19636 0.89104 0.87750 0.88371 1.21985 0.99687 1.05387 0.93237 1.86721 1.36034 1.96106 1.14707 1.20731 0.95085 0.96569 0.98608 1.21153 0.94437 0.98093 0.99526 1.21135 0.99912 0.93025 0.99955 1.21155 0.95980 0.98460 0.98711 1.21164 0.95230 0.97754 0.99920 1.21072 1.00190 0.91979 0.98845 0.93908 0.90868 0.92683 0.95202 0.93858 0.92694 0.89298 0.88867 0.92538 0.88050 0.92237 0.78546 0.85740 0.86132 0.86348 0.86177 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.93 16 2 N -0.61 -12.81 2.86 -182.95 -0.52 -13.33 16 3 C 0.25 6.50 5.16 -5.19 -0.03 6.48 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.50 10.31 7.23 -10.99 -0.08 10.23 16 13 O -0.52 -12.80 12.54 -12.72 -0.16 -12.96 16 14 C -0.17 -2.42 2.82 -27.88 -0.08 -2.50 16 15 C 0.19 2.78 0.81 -91.77 -0.07 2.70 16 16 C -0.15 -2.24 8.50 37.16 0.32 -1.93 16 17 O -0.53 -8.61 10.86 -53.51 -0.58 -9.19 16 18 C -0.11 -1.32 4.80 -104.62 -0.50 -1.82 16 19 C -0.11 -1.21 9.14 -39.58 -0.36 -1.57 16 20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 21 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.10 -1.17 9.35 -39.58 -0.37 -1.54 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 26 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 27 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 31 H 0.09 1.12 6.47 -51.93 -0.34 0.79 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.92 5.51 -51.93 -0.29 1.63 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.37 4.77 9.04 45.56 0.41 5.18 16 36 H 0.12 1.16 6.17 -52.48 -0.32 0.83 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.47 7.48 -52.49 -0.39 1.07 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -34.24 330.26 -7.70 -41.94 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.95 Total: 4.10 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.18 Total: -6.44 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.21 Total: -39.52 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.74 Total: -22.15 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.24 -7.70 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272863616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.631 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds