Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99584 * 2 1 4 4 C 1.50701 * 109.46757 * 269.99779 * 3 2 1 5 5 H 1.08005 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00108 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99563 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00219 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46954 * 60.00461 * 8 6 4 10 10 H 1.48496 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00426 * 8 6 4 12 12 C 1.34769 * 120.00112 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99617 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00255 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47050 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47174 * 59.99926 * 15 14 12 17 17 O 1.42898 * 109.47168 * 299.99756 * 15 14 12 18 18 C 1.50706 * 109.46728 * 179.97438 * 15 14 12 19 19 C 1.38233 * 120.00109 * 329.72369 * 18 15 14 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 15 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.47008 * 270.00062 * 1 2 3 25 25 H 1.08997 * 109.47249 * 30.00375 * 1 2 3 26 26 H 1.08997 * 109.47087 * 150.00570 * 1 2 3 27 27 H 1.09001 * 109.47451 * 29.99518 * 3 2 1 28 28 H 1.09000 * 109.47020 * 150.00068 * 3 2 1 29 29 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47288 * 59.99937 * 14 12 2 31 31 H 1.09001 * 109.46749 * 299.99788 * 14 12 2 32 32 H 1.08997 * 109.46785 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47171 * 299.99740 * 16 15 14 34 34 H 1.09004 * 109.47223 * 60.00243 * 16 15 14 35 35 H 0.96705 * 113.99611 * 300.00224 * 17 15 14 36 36 H 1.08004 * 119.99934 * 0.02562 * 19 18 15 37 37 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 38 38 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 39 39 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1258 2.8781 -1.6729 7 7 3.5530 3.6182 -0.6734 8 14 3.4378 3.4168 -3.4341 9 1 2.1404 3.5935 -4.1348 10 1 4.1800 4.7030 -3.4342 11 1 4.2412 2.3821 -4.1334 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1670 0.0001 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6351 0.0018 16 6 3.2585 -3.5534 1.2517 17 8 3.2022 -3.5599 -1.1644 18 6 1.6263 -4.9403 0.0024 19 6 0.3851 -5.0215 0.6055 20 6 -0.3079 -6.2176 0.6022 21 6 0.2443 -7.3347 0.0039 22 6 1.4878 -7.2548 -0.5946 23 6 2.1789 -6.0576 -0.5953 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5137 27 1 1.6083 2.0285 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0298 4.4441 -0.8506 30 1 0.7591 -2.5302 -0.8897 31 1 0.7585 -2.5298 0.8903 32 1 3.9665 -4.3821 1.2528 33 1 3.8035 -2.6094 1.2516 34 1 2.6312 -3.6109 2.1412 35 1 2.7107 -3.6057 -1.9959 36 1 -0.0448 -4.1495 1.0759 37 1 -1.2796 -6.2800 1.0695 38 1 -0.2960 -8.2699 0.0037 39 1 1.9191 -8.1275 -1.0624 40 1 3.1506 -5.9953 -1.0625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272863616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -79.263214 kcal Electronic energy + Delta-G solvation = -21723.226902 eV Core-core repulsion = 18502.171450 eV Total energy + Delta-G solvation = -3221.055453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35826 -40.01162 -37.91365 -36.41900 -34.73760 -33.79110 -31.74911 -30.97103 -29.98568 -28.64497 -27.15195 -25.04119 -24.02199 -23.25719 -21.28363 -19.97731 -18.72556 -18.64906 -17.62415 -17.21006 -16.84058 -16.57944 -16.18664 -15.66215 -15.56021 -15.27929 -14.84885 -14.40659 -14.27454 -14.00478 -13.79460 -13.49185 -13.42650 -13.22079 -13.14872 -12.96956 -12.72751 -12.65531 -12.56836 -12.40854 -12.14731 -11.98077 -11.70622 -11.63386 -10.98904 -10.63702 -10.31627 -9.77546 -9.64773 -9.32725 -8.21461 -6.36479 0.43960 0.54406 1.35765 1.40715 1.47711 1.94248 2.33358 2.47888 2.90141 3.07612 3.33099 3.57391 3.71038 4.04301 4.09718 4.18589 4.21682 4.34360 4.44545 4.53862 4.66490 4.70525 4.73083 4.78247 4.92603 4.96004 4.97338 5.05574 5.12667 5.21408 5.24776 5.39765 5.59110 5.61637 5.66717 5.72033 5.89038 6.08195 6.14804 6.71622 6.86118 6.87466 7.30416 7.60885 8.85107 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004033 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.170502 B = 6941.587157 C = 7154.841706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.494 3.506 13 O -0.572 6.572 14 C -0.151 4.151 15 C 0.194 3.806 16 C -0.145 4.145 17 O -0.559 6.559 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.118 4.118 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.021 0.979 28 H -0.005 1.005 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.379 0.621 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -20.997 1.966 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.348 5.348 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.283 3.717 13 O -0.452 6.452 14 C -0.190 4.190 15 C 0.152 3.848 16 C -0.202 4.202 17 O -0.365 6.365 18 C -0.120 4.120 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.039 0.961 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.226 0.774 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.264 -20.763 2.471 23.751 hybrid contribution 0.273 0.827 -1.138 1.433 sum -10.992 -19.936 1.333 22.804 Atomic orbital electron populations 1.21919 0.78148 1.03852 1.02521 1.48208 1.08230 1.06368 1.71978 1.18688 0.90997 0.80583 0.95807 1.21694 1.36766 1.06418 0.93148 0.92940 1.25872 0.94947 0.96479 1.01974 1.70046 1.38995 1.14827 1.33106 0.85478 0.78867 0.77308 0.79214 1.18321 1.20332 1.20463 1.21129 0.87993 0.86180 0.76373 1.90636 1.16200 1.87550 1.50795 1.22496 0.99254 0.90624 1.06662 1.19618 0.88830 0.89224 0.87079 1.21935 1.00140 1.02933 0.95222 1.86689 1.37608 1.96326 1.15889 1.20431 0.95865 0.95177 1.00480 1.21344 0.93766 0.99364 0.99248 1.21479 1.00787 0.92413 0.99351 1.21531 0.95581 0.99606 0.97487 1.21407 0.95616 0.97626 0.99901 1.21099 1.00218 0.92795 0.99506 0.91112 0.91879 0.88829 0.96138 0.98639 0.92438 0.86812 0.85525 0.92629 0.92196 0.90084 0.77352 0.84235 0.83515 0.83789 0.84477 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 10.24 127.77 1.31 3.57 16 2 N -0.62 -26.11 2.86 -851.13 -2.43 -28.54 16 3 C 0.26 14.36 5.16 85.63 0.44 14.80 16 4 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.35 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 8 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.49 20.36 7.23 87.66 0.63 21.00 16 13 O -0.57 -29.77 12.54 14.43 0.18 -29.59 16 14 C -0.15 -4.04 2.82 29.85 0.08 -3.96 16 15 C 0.19 5.43 0.81 -11.54 -0.01 5.42 16 16 C -0.15 -4.54 8.50 71.98 0.61 -3.93 16 17 O -0.56 -18.49 10.86 -131.50 -1.43 -19.92 16 18 C -0.12 -2.63 4.80 -19.86 -0.10 -2.73 16 19 C -0.12 -2.09 9.14 22.27 0.20 -1.89 16 20 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 21 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 23 C -0.12 -2.54 9.35 22.27 0.21 -2.33 16 24 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 26 H 0.09 1.99 6.44 -2.39 -0.02 1.98 16 27 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 28 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.11 2.53 7.40 -2.39 -0.02 2.51 16 31 H 0.13 2.56 6.47 -2.39 -0.02 2.54 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 2.41 5.51 -2.39 -0.01 2.39 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.38 9.92 9.04 -74.05 -0.67 9.25 16 36 H 0.14 1.94 6.17 -2.91 -0.02 1.92 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.12 2.71 7.48 -2.91 -0.02 2.69 16 Total: -1.00 -78.82 330.26 3.76 -75.05 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.37 Total: 18.27 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.76 Total: -5.92 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.15 Total: -85.65 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.25 Total: -49.51 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -78.82 3.76 -75.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272863616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.209 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds