Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99737 * 2 1 4 4 C 1.50702 * 109.46648 * 269.99416 * 3 2 1 5 5 H 1.07995 * 120.00642 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99490 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99682 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00299 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46997 * 89.99754 * 8 6 4 10 10 H 1.48498 * 109.47282 * 210.00008 * 8 6 4 11 11 H 1.48505 * 109.46811 * 329.99739 * 8 6 4 12 12 C 1.34771 * 120.00038 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99884 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99793 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.46861 * 185.46016 * 14 12 2 16 16 C 1.52995 * 109.47009 * 176.12907 * 15 14 12 17 17 O 1.42901 * 109.46937 * 296.13095 * 15 14 12 18 18 C 1.50701 * 109.47126 * 56.13006 * 15 14 12 19 19 C 1.38241 * 119.99760 * 209.99865 * 18 15 14 20 20 C 1.38236 * 119.99636 * 180.02562 * 19 18 15 21 21 C 1.38232 * 120.00213 * 359.96299 * 20 19 18 22 22 C 1.38241 * 120.00017 * 0.27054 * 21 20 19 23 23 C 1.38233 * 119.99751 * 359.53793 * 22 21 20 24 24 H 1.08993 * 109.47521 * 270.00744 * 1 2 3 25 25 H 1.09007 * 109.46978 * 30.00543 * 1 2 3 26 26 H 1.08993 * 109.46998 * 150.00186 * 1 2 3 27 27 H 1.08995 * 109.47340 * 29.99426 * 3 2 1 28 28 H 1.09004 * 109.47054 * 149.99966 * 3 2 1 29 29 H 0.96996 * 120.00289 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.47418 * 65.45977 * 14 12 2 31 31 H 1.08999 * 109.47123 * 305.45828 * 14 12 2 32 32 H 1.08998 * 109.47432 * 304.95007 * 16 15 14 33 33 H 1.09000 * 109.47042 * 64.94778 * 16 15 14 34 34 H 1.09005 * 109.47314 * 184.94706 * 16 15 14 35 35 H 0.96697 * 114.00462 * 60.00002 * 17 15 14 36 36 H 1.08000 * 119.99934 * 0.02562 * 19 18 15 37 37 H 1.08002 * 120.00064 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.99736 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.99963 * 179.73274 * 22 21 20 40 40 H 1.08000 * 119.99863 * 180.20860 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.3458 3.2572 -2.9128 8 14 3.7350 3.9281 -0.2531 9 1 5.1083 3.5059 0.1225 10 1 3.7509 5.3549 -0.6644 11 1 2.8291 3.7587 0.9114 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3739 -3.6319 0.1384 16 6 1.6033 -4.9501 0.2355 17 8 3.2320 -3.6646 -1.0038 18 6 3.2016 -3.4410 1.3832 19 6 4.4951 -3.9260 1.4342 20 6 5.2542 -3.7514 2.5763 21 6 4.7200 -3.0912 3.6670 22 6 3.4248 -2.6105 3.6177 23 6 2.6672 -2.7816 2.4743 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5137 28 1 3.1500 1.1385 0.5139 29 1 3.8232 4.0827 -3.0901 30 1 0.8344 -2.5737 -0.9344 31 1 0.6871 -2.4886 0.8373 32 1 0.8857 -4.8921 1.0538 33 1 1.0739 -5.1311 -0.6999 34 1 2.3015 -5.7662 0.4216 35 1 3.7525 -2.8592 -1.1280 36 1 4.9126 -4.4413 0.5818 37 1 6.2646 -4.1307 2.6164 38 1 5.3132 -2.9545 4.5591 39 1 3.0061 -2.0985 4.4715 40 1 1.6564 -2.4031 2.4346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272863620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -56.459700 kcal Electronic energy + Delta-G solvation = -22332.521912 eV Core-core repulsion = 19112.455294 eV Total energy + Delta-G solvation = -3220.066618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33574 -38.52857 -36.73260 -34.87328 -32.83974 -32.41574 -30.69520 -29.78938 -29.01156 -27.47198 -25.81927 -23.27808 -22.47794 -22.04631 -20.11354 -18.53391 -17.56782 -16.98094 -16.54421 -16.10094 -15.52454 -15.10309 -14.68323 -14.44513 -14.19263 -13.87595 -13.60802 -13.24749 -12.85948 -12.57190 -12.38121 -12.37482 -12.21408 -12.10271 -12.02181 -11.63853 -11.57770 -11.46647 -11.05152 -10.92726 -10.62890 -10.52393 -10.17433 -9.82389 -9.57197 -9.11148 -8.70143 -8.60958 -8.45213 -7.74270 -6.10761 -4.09720 1.55409 1.62056 3.27302 3.28014 3.33257 3.35357 3.78527 3.97696 4.37600 4.39876 4.70575 4.85425 4.92499 5.12636 5.14486 5.22373 5.27024 5.41299 5.48292 5.58923 5.64538 5.69442 5.70633 5.79076 5.91633 5.94222 6.11614 6.14325 6.18000 6.22570 6.63796 6.66219 6.68544 6.78709 6.91798 7.19678 7.27752 7.58587 7.97408 8.20305 8.44717 8.88933 8.94706 9.49427 11.02580 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.005803 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.497437 B = 4824.258342 C = 5361.315990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.596 5.596 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.510 3.490 13 O -0.536 6.536 14 C -0.171 4.171 15 C 0.189 3.811 16 C -0.133 4.133 17 O -0.560 6.560 18 C -0.083 4.083 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.112 4.112 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -14.249 11.599 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.297 3.703 13 O -0.414 6.414 14 C -0.212 4.212 15 C 0.148 3.852 16 C -0.191 4.191 17 O -0.372 6.372 18 C -0.083 4.083 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.131 4.131 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.517 -14.640 11.414 19.105 hybrid contribution 0.480 1.503 0.649 1.706 sum -4.037 -13.137 12.063 18.286 Atomic orbital electron populations 1.21683 0.80993 1.03138 1.00430 1.47821 1.06234 1.07167 1.71505 1.19658 0.92431 0.80007 0.98355 1.21315 1.37023 1.07184 0.91222 0.90778 1.24857 0.95236 0.97342 0.95538 1.69894 1.41394 1.23585 1.18633 0.86855 0.80135 0.79790 0.82928 1.19916 1.21041 1.19139 1.20238 0.88128 0.84977 0.76976 1.90595 1.13767 1.86769 1.50305 1.22575 1.00063 0.93903 1.04631 1.19627 0.88103 0.93836 0.83681 1.21744 0.99685 0.95209 1.02423 1.86340 1.59188 1.45998 1.45661 1.20304 0.95349 0.97351 0.95326 1.20892 0.93597 0.99376 0.97727 1.21076 0.99474 0.99690 0.93689 1.21056 0.95622 0.99224 0.98577 1.21019 0.94732 1.00110 0.97950 1.20944 0.99900 0.98842 0.93369 0.93670 0.90463 0.92077 0.95387 0.94528 0.92542 0.88082 0.88760 0.91224 0.91372 0.91623 0.75258 0.85800 0.86469 0.86635 0.86563 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.14 59.85 0.61 1.82 16 2 N -0.60 -11.92 2.86 -182.95 -0.52 -12.44 16 3 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 4 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.51 9.84 6.42 -10.99 -0.07 9.77 16 13 O -0.54 -12.20 12.35 -11.71 -0.14 -12.35 16 14 C -0.17 -2.43 2.92 -27.88 -0.08 -2.51 16 15 C 0.19 2.70 0.95 -91.77 -0.09 2.62 16 16 C -0.13 -1.48 8.82 37.16 0.33 -1.15 16 17 O -0.56 -9.36 11.95 -52.49 -0.63 -9.98 16 18 C -0.08 -1.24 3.16 -104.62 -0.33 -1.58 16 19 C -0.10 -1.46 9.35 -39.58 -0.37 -1.83 16 20 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 21 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 22 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.11 -1.62 8.31 -39.58 -0.33 -1.95 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.20 8.07 -51.92 -0.42 0.78 16 26 H 0.06 0.74 6.59 -51.93 -0.34 0.40 16 27 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 28 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.10 1.34 7.68 -51.93 -0.40 0.94 16 31 H 0.09 1.07 6.55 -51.93 -0.34 0.73 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 7.28 6.69 45.56 0.30 7.59 16 36 H 0.12 1.77 7.48 -52.49 -0.39 1.38 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.49 6.21 -52.49 -0.33 1.16 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -33.67 325.56 -7.46 -41.13 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.19 Total: 7.83 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.99 Total: -9.19 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.25 Total: -39.33 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.77 Total: -22.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.67 -7.46 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272863620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds