Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99737 * 2 1 4 4 C 1.50702 * 109.46648 * 269.99416 * 3 2 1 5 5 H 1.07995 * 120.00642 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99490 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99682 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00299 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46997 * 89.99754 * 8 6 4 10 10 H 1.48498 * 109.47282 * 210.00008 * 8 6 4 11 11 H 1.48505 * 109.46811 * 329.99739 * 8 6 4 12 12 C 1.34771 * 120.00038 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99884 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99793 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.46861 * 185.46016 * 14 12 2 16 16 C 1.52995 * 109.47009 * 176.12907 * 15 14 12 17 17 O 1.42901 * 109.46937 * 296.13095 * 15 14 12 18 18 C 1.50701 * 109.47126 * 56.13006 * 15 14 12 19 19 C 1.38241 * 119.99760 * 209.99865 * 18 15 14 20 20 C 1.38236 * 119.99636 * 180.02562 * 19 18 15 21 21 C 1.38232 * 120.00213 * 359.96299 * 20 19 18 22 22 C 1.38241 * 120.00017 * 0.27054 * 21 20 19 23 23 C 1.38233 * 119.99751 * 359.53793 * 22 21 20 24 24 H 1.08993 * 109.47521 * 270.00744 * 1 2 3 25 25 H 1.09007 * 109.46978 * 30.00543 * 1 2 3 26 26 H 1.08993 * 109.46998 * 150.00186 * 1 2 3 27 27 H 1.08995 * 109.47340 * 29.99426 * 3 2 1 28 28 H 1.09004 * 109.47054 * 149.99966 * 3 2 1 29 29 H 0.96996 * 120.00289 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.47418 * 65.45977 * 14 12 2 31 31 H 1.08999 * 109.47123 * 305.45828 * 14 12 2 32 32 H 1.08998 * 109.47432 * 304.95007 * 16 15 14 33 33 H 1.09000 * 109.47042 * 64.94778 * 16 15 14 34 34 H 1.09005 * 109.47314 * 184.94706 * 16 15 14 35 35 H 0.96697 * 114.00462 * 60.00002 * 17 15 14 36 36 H 1.08000 * 119.99934 * 0.02562 * 19 18 15 37 37 H 1.08002 * 120.00064 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.99736 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.99963 * 179.73274 * 22 21 20 40 40 H 1.08000 * 119.99863 * 180.20860 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.3458 3.2572 -2.9128 8 14 3.7350 3.9281 -0.2531 9 1 5.1083 3.5059 0.1225 10 1 3.7509 5.3549 -0.6644 11 1 2.8291 3.7587 0.9114 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3739 -3.6319 0.1384 16 6 1.6033 -4.9501 0.2355 17 8 3.2320 -3.6646 -1.0038 18 6 3.2016 -3.4410 1.3832 19 6 4.4951 -3.9260 1.4342 20 6 5.2542 -3.7514 2.5763 21 6 4.7200 -3.0912 3.6670 22 6 3.4248 -2.6105 3.6177 23 6 2.6672 -2.7816 2.4743 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5137 28 1 3.1500 1.1385 0.5139 29 1 3.8232 4.0827 -3.0901 30 1 0.8344 -2.5737 -0.9344 31 1 0.6871 -2.4886 0.8373 32 1 0.8857 -4.8921 1.0538 33 1 1.0739 -5.1311 -0.6999 34 1 2.3015 -5.7662 0.4216 35 1 3.7525 -2.8592 -1.1280 36 1 4.9126 -4.4413 0.5818 37 1 6.2646 -4.1307 2.6164 38 1 5.3132 -2.9545 4.5591 39 1 3.0061 -2.0985 4.4715 40 1 1.6564 -2.4031 2.4346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272863620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -78.933931 kcal Electronic energy + Delta-G solvation = -22333.496468 eV Core-core repulsion = 19112.455294 eV Total energy + Delta-G solvation = -3221.041174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58135 -39.81458 -37.92897 -36.47642 -34.74723 -33.81223 -31.74721 -31.17141 -30.34183 -28.78357 -27.25417 -24.64319 -23.90701 -23.24331 -21.28347 -19.99700 -19.15814 -18.66110 -17.90441 -17.37417 -16.96488 -16.51187 -16.18836 -15.65981 -15.52330 -15.15448 -14.96932 -14.53003 -14.29527 -13.97794 -13.85024 -13.63783 -13.37564 -13.25308 -13.22236 -13.03428 -12.83057 -12.64813 -12.64190 -12.44785 -12.09722 -12.02596 -11.75747 -11.66180 -10.97739 -10.84442 -10.62136 -9.75090 -9.54358 -9.33924 -8.35172 -6.39892 0.51811 0.56619 1.30623 1.34692 1.42782 1.82571 2.29075 2.34450 2.92980 2.99483 3.27285 3.60931 3.73147 3.78573 4.11219 4.17092 4.27071 4.38203 4.39335 4.60395 4.62983 4.66721 4.67979 4.75626 4.82801 4.92906 4.96056 4.97410 4.99651 5.16580 5.19469 5.28931 5.45421 5.59558 5.62168 5.65335 5.71951 6.18130 6.22838 6.61655 6.62258 6.73962 7.21319 7.45107 8.81822 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.005803 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.497437 B = 4824.258342 C = 5361.315990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.226 3.774 4 C -0.534 4.534 5 H 0.028 0.972 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.238 1.238 12 C 0.501 3.499 13 O -0.579 6.579 14 C -0.159 4.159 15 C 0.180 3.820 16 C -0.129 4.129 17 O -0.573 6.573 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.126 4.126 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.381 0.619 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 -14.618 14.302 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.104 3.896 4 C -0.572 4.572 5 H 0.046 0.954 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.161 1.161 12 C 0.290 3.710 13 O -0.460 6.460 14 C -0.198 4.198 15 C 0.139 3.861 16 C -0.185 4.185 17 O -0.383 6.383 18 C -0.095 4.095 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.144 4.144 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.159 -15.046 14.130 21.540 hybrid contribution 0.969 1.548 -0.257 1.844 sum -5.190 -13.498 13.873 20.040 Atomic orbital electron populations 1.21997 0.77783 1.04009 1.03039 1.47929 1.08313 1.05926 1.71619 1.19272 0.92639 0.82639 0.95079 1.21566 1.36563 1.06626 0.92480 0.95353 1.25842 0.95400 0.98992 0.98476 1.70050 1.42758 1.24512 1.21249 0.85733 0.79475 0.77840 0.79993 1.20413 1.20039 1.16125 1.21139 0.87975 0.86248 0.75601 1.90577 1.15966 1.87526 1.51916 1.22585 0.99976 0.90458 1.06827 1.19984 0.87951 0.95513 0.82664 1.21771 0.99744 0.93115 1.03919 1.86337 1.59613 1.45239 1.47113 1.20446 0.95516 0.97653 0.95850 1.21030 0.94310 1.00423 0.98225 1.21371 1.00300 0.99662 0.93537 1.21410 0.95973 0.98649 0.99238 1.21392 0.94917 0.99853 0.98508 1.21191 1.00850 0.98930 0.93462 0.90014 0.91766 0.89214 0.93553 0.96427 0.92318 0.86811 0.84918 0.88527 0.90590 0.91934 0.76698 0.86528 0.84745 0.84224 0.84356 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.97 10.14 127.77 1.30 3.26 16 2 N -0.61 -23.44 2.86 -851.12 -2.43 -25.87 16 3 C 0.23 10.84 4.23 85.63 0.36 11.20 16 4 C -0.53 -31.26 9.94 25.60 0.25 -31.00 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.64 5.47 84.66 0.46 1.10 16 7 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 8 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 12 C 0.50 18.86 6.42 87.66 0.56 19.43 16 13 O -0.58 -26.76 12.35 13.46 0.17 -26.59 16 14 C -0.16 -4.11 2.92 29.85 0.09 -4.02 16 15 C 0.18 4.90 0.95 -11.54 -0.01 4.89 16 16 C -0.13 -2.53 8.82 71.98 0.64 -1.90 16 17 O -0.57 -19.45 11.95 -132.48 -1.58 -21.03 16 18 C -0.09 -2.74 3.16 -19.86 -0.06 -2.80 16 19 C -0.12 -3.64 9.35 22.27 0.21 -3.43 16 20 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 21 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 22 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 23 C -0.13 -3.37 8.31 22.27 0.18 -3.19 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.88 8.07 -2.38 -0.02 1.86 16 26 H 0.09 1.86 6.59 -2.39 -0.02 1.84 16 27 H 0.05 2.05 7.13 -2.39 -0.02 2.03 16 28 H 0.02 0.91 6.85 -2.38 -0.02 0.90 16 29 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.11 2.69 7.68 -2.39 -0.02 2.68 16 31 H 0.13 2.40 6.55 -2.39 -0.02 2.38 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.38 14.85 6.69 -74.06 -0.50 14.35 16 36 H 0.12 3.50 7.48 -2.91 -0.02 3.47 16 37 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.13 2.92 6.21 -2.91 -0.02 2.90 16 Total: -1.00 -76.58 325.56 3.47 -73.11 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.48 Total: 29.38 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.65 Total: -15.79 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.13 Total: -85.59 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -1.42 Total: -47.62 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -76.58 3.47 -73.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272863620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.828 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds