Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 C 1.50696 * 109.47050 * 59.99926 * 4 2 1 6 6 O 1.21285 * 120.00128 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00304 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47211 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47162 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99726 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00084 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99769 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47399 * 90.00214 * 14 12 10 16 16 H 1.48503 * 109.46845 * 209.99704 * 14 12 10 17 17 H 1.48498 * 109.47295 * 329.99608 * 14 12 10 18 18 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 19 19 C 1.38233 * 120.00109 * 89.72231 * 18 2 1 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 2 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 25 25 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 30 30 H 0.97005 * 119.99929 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.47418 * 300.00762 * 8 7 5 32 32 H 1.09001 * 109.46578 * 60.00324 * 8 7 5 33 33 H 1.09001 * 109.47306 * 300.00519 * 9 8 7 34 34 H 1.09001 * 109.46880 * 60.00760 * 9 8 7 35 35 H 0.96998 * 120.00025 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99934 * 0.02562 * 19 18 2 37 37 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 38 38 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 39 39 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8628 -0.4717 -3.7038 8 6 1.3740 0.2186 -4.9000 9 6 1.8841 -0.5026 -6.1492 10 6 1.3818 0.2078 -7.3796 11 1 0.7611 1.0862 -7.2805 12 6 1.7145 -0.2635 -8.6319 13 7 2.4698 -1.3333 -8.7526 14 14 1.0924 0.6176 -10.1571 15 1 2.0713 1.6586 -10.5614 16 1 0.9268 -0.3615 -11.2613 17 1 -0.2153 1.2560 -9.8612 18 6 2.0324 -0.7105 1.2305 19 6 2.2573 -2.0740 1.1979 20 6 2.7223 -2.7249 2.3253 21 6 2.9535 -2.0139 3.4879 22 6 2.7236 -0.6512 3.5221 23 6 2.2630 0.0006 2.3934 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 2.4199 -1.2608 -3.7928 31 1 0.2840 0.2187 -4.8996 32 1 1.7373 1.2463 -4.9003 33 1 2.9741 -0.5022 -6.1494 34 1 1.5210 -1.5303 -6.1490 35 1 2.7036 -1.6651 -9.6336 36 1 2.0734 -2.6301 0.2905 37 1 2.9023 -3.7895 2.2985 38 1 3.3143 -2.5228 4.3696 39 1 2.9046 -0.0955 4.4303 40 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273103097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = -74.686122 kcal Electronic energy + Delta-G solvation = -20875.185310 eV Core-core repulsion = 17654.328335 eV Total energy + Delta-G solvation = -3220.856975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40232 -38.98647 -36.96632 -34.77461 -32.96589 -32.79062 -31.11451 -30.29505 -29.50808 -27.79587 -24.70216 -23.47478 -22.70935 -21.13650 -20.53771 -19.78543 -18.01293 -16.62066 -16.53510 -16.01948 -15.66448 -15.33816 -14.91513 -14.57842 -14.47185 -14.38856 -14.00341 -13.62593 -13.31731 -12.94848 -12.71714 -12.31558 -12.27418 -12.06505 -11.79041 -11.59388 -11.28571 -11.19726 -11.01234 -10.87529 -10.63934 -10.30041 -10.15205 -9.71668 -9.40157 -9.15715 -9.07396 -8.97337 -8.51631 -8.32234 -6.10004 -4.12723 1.08432 1.16986 3.05251 3.29192 3.35233 3.39297 3.52867 3.63939 4.20265 4.40107 4.50389 4.58779 4.77024 4.80059 4.88915 4.99020 5.20697 5.27116 5.29086 5.37024 5.48253 5.63908 5.70096 5.79386 5.87615 5.99422 6.22576 6.27888 6.33875 6.36075 6.37268 6.47609 6.75226 6.76220 6.98550 7.51703 7.61488 7.66166 7.88552 8.05141 8.28134 8.72664 8.93558 9.52202 11.01640 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041772 B = 0.002892 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.152422 B = 9679.958575 C =10092.573549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.195 3.805 3 O -0.534 6.534 4 C -0.172 4.172 5 C 0.505 3.495 6 O -0.528 6.528 7 N -0.726 5.726 8 C 0.123 3.877 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.102 4.102 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.369 0.631 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.396 0.604 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -3.297 23.505 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.153 3.847 3 O -0.338 6.338 4 C -0.212 4.212 5 C 0.290 3.710 6 O -0.405 6.405 7 N -0.377 5.377 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.120 4.120 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.215 0.785 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.229 0.771 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.121 -2.556 23.425 23.590 hybrid contribution 0.756 -0.349 -0.907 1.231 sum 1.877 -2.905 22.518 22.782 Atomic orbital electron populations 1.21994 0.91330 1.02100 1.04961 1.19611 0.95458 0.81522 0.88109 1.86709 1.25841 1.24662 1.96597 1.22520 1.02840 1.01511 0.94329 1.20280 0.81174 0.85032 0.84491 1.90654 1.37581 1.25896 1.86384 1.46365 1.53145 1.31832 1.06313 1.21687 0.98427 0.96252 0.83599 1.19317 0.96882 0.96012 0.90267 1.21065 1.31935 1.12523 0.90476 0.92255 1.24999 0.95025 0.95012 0.99275 1.69953 1.36781 1.22901 1.23746 0.86513 0.79377 0.79354 0.82324 1.20546 1.21166 1.19716 1.20659 0.99838 0.94442 0.96404 1.21160 0.99285 0.93973 0.98774 1.21157 0.99680 0.99929 0.93145 1.21182 1.00320 0.94503 0.98087 1.21174 0.99790 0.94726 0.98341 1.21050 0.98344 1.00577 0.92072 0.92353 0.88281 0.91995 0.78451 0.88797 0.88197 0.77130 0.92672 0.92656 0.96026 0.96006 0.92852 0.85667 0.86013 0.86247 0.86111 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.50 37.16 0.32 -1.59 16 2 C 0.19 2.30 0.81 -91.77 -0.07 2.22 16 3 O -0.53 -6.98 10.86 -53.50 -0.58 -7.57 16 4 C -0.17 -1.96 4.26 -27.88 -0.12 -2.08 16 5 C 0.51 8.18 7.39 -10.99 -0.08 8.10 16 6 O -0.53 -10.50 12.96 -12.71 -0.16 -10.66 16 7 N -0.73 -12.35 5.56 -60.29 -0.33 -12.68 16 8 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 14 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.11 -1.15 4.80 -104.62 -0.50 -1.66 16 19 C -0.11 -1.04 9.14 -39.58 -0.36 -1.41 16 20 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.10 -1.00 9.35 -39.58 -0.37 -1.37 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.10 1.58 5.51 -51.93 -0.29 1.30 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.37 3.61 9.04 45.56 0.41 4.02 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.94 6.51 -51.93 -0.34 0.60 16 30 H 0.40 5.78 8.47 -40.82 -0.35 5.43 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.13 0.98 6.17 -52.48 -0.32 0.66 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.23 7.48 -52.49 -0.39 0.84 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -32.72 333.60 -8.34 -41.06 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.04 Total: 6.34 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.96 Total: -12.51 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.40 Total: -38.09 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.75 Total: -18.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.72 -8.34 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.621 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds