Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 C 1.50696 * 109.47050 * 59.99926 * 4 2 1 6 6 O 1.21285 * 120.00128 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00304 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47211 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47162 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99726 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00084 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99769 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47399 * 90.00214 * 14 12 10 16 16 H 1.48503 * 109.46845 * 209.99704 * 14 12 10 17 17 H 1.48498 * 109.47295 * 329.99608 * 14 12 10 18 18 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 19 19 C 1.38233 * 120.00109 * 89.72231 * 18 2 1 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 2 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 25 25 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 30 30 H 0.97005 * 119.99929 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.47418 * 300.00762 * 8 7 5 32 32 H 1.09001 * 109.46578 * 60.00324 * 8 7 5 33 33 H 1.09001 * 109.47306 * 300.00519 * 9 8 7 34 34 H 1.09001 * 109.46880 * 60.00760 * 9 8 7 35 35 H 0.96998 * 120.00025 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99934 * 0.02562 * 19 18 2 37 37 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 38 38 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 39 39 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8628 -0.4717 -3.7038 8 6 1.3740 0.2186 -4.9000 9 6 1.8841 -0.5026 -6.1492 10 6 1.3818 0.2078 -7.3796 11 1 0.7611 1.0862 -7.2805 12 6 1.7145 -0.2635 -8.6319 13 7 2.4698 -1.3333 -8.7526 14 14 1.0924 0.6176 -10.1571 15 1 2.0713 1.6586 -10.5614 16 1 0.9268 -0.3615 -11.2613 17 1 -0.2153 1.2560 -9.8612 18 6 2.0324 -0.7105 1.2305 19 6 2.2573 -2.0740 1.1979 20 6 2.7223 -2.7249 2.3253 21 6 2.9535 -2.0139 3.4879 22 6 2.7236 -0.6512 3.5221 23 6 2.2630 0.0006 2.3934 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 2.4199 -1.2608 -3.7928 31 1 0.2840 0.2187 -4.8996 32 1 1.7373 1.2463 -4.9003 33 1 2.9741 -0.5022 -6.1494 34 1 1.5210 -1.5303 -6.1490 35 1 2.7036 -1.6651 -9.6336 36 1 2.0734 -2.6301 0.2905 37 1 2.9023 -3.7895 2.2985 38 1 3.3143 -2.5228 4.3696 39 1 2.9046 -0.0955 4.4303 40 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273103097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -96.360405 kcal Electronic energy + Delta-G solvation = -20876.125177 eV Core-core repulsion = 17654.328335 eV Total energy + Delta-G solvation = -3221.796842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38130 -40.05159 -37.92497 -36.45789 -34.79206 -33.83855 -31.89950 -31.67367 -30.56590 -29.00017 -26.55179 -24.36186 -23.44087 -22.85111 -21.70295 -20.88789 -18.97007 -18.49883 -17.43672 -17.35487 -16.77104 -16.56995 -16.34210 -15.89432 -15.62744 -15.40550 -15.08576 -14.71503 -14.43173 -14.27602 -14.02031 -13.57473 -13.25698 -13.19139 -13.01625 -12.94513 -12.70968 -12.53592 -12.48745 -12.18317 -11.98539 -11.71435 -11.60923 -11.44332 -11.07404 -10.60761 -10.51087 -9.91981 -9.78961 -9.65836 -8.24888 -6.35182 0.42363 0.53044 1.41214 1.41471 1.53062 1.76570 2.28056 2.46166 2.88547 3.09797 3.33140 3.59701 3.67268 4.03678 4.11428 4.18750 4.22407 4.33375 4.49928 4.53379 4.56014 4.66040 4.69743 4.75638 4.86747 4.94727 4.95493 5.11407 5.19945 5.27601 5.40893 5.56118 5.58963 5.60394 5.65919 5.69366 5.79951 6.13258 6.16815 6.71644 6.78360 6.86217 7.34201 7.41432 8.86921 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041772 B = 0.002892 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.152422 B = 9679.958575 C =10092.573549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.196 3.804 3 O -0.557 6.557 4 C -0.160 4.160 5 C 0.504 3.496 6 O -0.567 6.567 7 N -0.722 5.722 8 C 0.142 3.858 9 C 0.024 3.976 10 C -0.548 4.548 11 H 0.057 0.943 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.964 3.036 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.267 1.267 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.116 4.116 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.381 0.619 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.409 0.591 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -4.358 24.541 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 O -0.363 6.363 4 C -0.199 4.199 5 C 0.291 3.709 6 O -0.446 6.446 7 N -0.374 5.374 8 C 0.018 3.982 9 C -0.014 4.014 10 C -0.586 4.586 11 H 0.075 0.925 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.192 1.192 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.229 0.771 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.245 0.755 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.732 -3.634 24.484 24.813 hybrid contribution 0.580 -0.032 -1.147 1.285 sum 2.313 -3.666 23.338 23.737 Atomic orbital electron populations 1.21959 0.92724 1.02609 1.03106 1.19564 0.94534 0.81274 0.89123 1.86675 1.27108 1.25795 1.96728 1.22532 1.04247 1.02014 0.91148 1.21107 0.80059 0.84534 0.85162 1.90656 1.39200 1.27803 1.86925 1.46192 1.53499 1.32187 1.05526 1.21142 0.97450 0.95427 0.84133 1.19121 0.95779 0.95333 0.91154 1.21484 1.32244 1.12866 0.92037 0.92510 1.25859 0.95088 0.95724 1.02452 1.70049 1.37666 1.24121 1.24735 0.85465 0.78990 0.78339 0.78381 1.19752 1.20395 1.19168 1.20451 1.01093 0.94933 0.95633 1.21354 0.99222 0.93482 0.99811 1.21471 0.98941 1.01090 0.92822 1.21523 0.99467 0.94366 0.98934 1.21418 0.99343 0.95312 0.98525 1.21109 0.99095 1.00500 0.92655 0.92589 0.91596 0.90338 0.77085 0.86252 0.85468 0.75514 0.93894 0.94026 0.97371 0.97265 0.92509 0.84321 0.83910 0.84027 0.84465 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.50 71.98 0.61 -3.18 16 2 C 0.20 4.44 0.81 -11.54 -0.01 4.43 16 3 O -0.56 -14.50 10.86 -131.52 -1.43 -15.93 16 4 C -0.16 -3.33 4.26 29.85 0.13 -3.20 16 5 C 0.50 16.06 7.39 87.66 0.65 16.71 16 6 O -0.57 -22.93 12.96 14.42 0.19 -22.75 16 7 N -0.72 -24.29 5.56 -463.06 -2.57 -26.87 16 8 C 0.14 6.16 5.61 86.38 0.48 6.64 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 11 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 12 C 0.01 0.43 5.46 84.66 0.46 0.89 16 13 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 14 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 C -0.12 -2.26 4.80 -19.86 -0.10 -2.35 16 19 C -0.12 -1.88 9.14 22.27 0.20 -1.67 16 20 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 21 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 23 C -0.12 -2.11 9.35 22.27 0.21 -1.90 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 2.17 5.51 -2.39 -0.01 2.16 16 26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.38 7.30 9.04 -74.05 -0.67 6.63 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.13 2.00 6.51 -2.39 -0.02 1.98 16 30 H 0.41 11.52 8.47 -92.70 -0.79 10.73 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 36 H 0.14 1.68 6.17 -2.91 -0.02 1.67 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.12 2.31 7.48 -2.91 -0.02 2.29 16 Total: -1.00 -70.97 333.60 1.79 -69.18 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.40 Total: 22.02 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.70 Total: -17.48 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.29 Total: -80.85 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.24 Total: -38.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.97 1.79 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.182 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds