Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47268 * 120.00407 * 2 1 3 5 5 C 1.50704 * 109.47053 * 176.14136 * 4 2 1 6 6 O 1.21274 * 119.99963 * 5.43071 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.43681 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47120 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47454 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99959 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47562 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47257 * 120.00450 * 14 12 10 17 17 H 1.48500 * 109.47171 * 240.00035 * 14 12 10 18 18 C 1.50704 * 109.47049 * 239.99936 * 2 1 3 19 19 C 1.38238 * 119.99727 * 89.99761 * 18 2 1 20 20 C 1.38231 * 120.00148 * 180.02562 * 19 18 2 21 21 C 1.38241 * 120.00099 * 359.95619 * 20 19 18 22 22 C 1.38240 * 119.99474 * 0.28173 * 21 20 19 23 23 C 1.38231 * 120.00464 * 270.02271 * 18 2 1 24 24 H 1.09009 * 109.47165 * 184.94977 * 1 2 3 25 25 H 1.09004 * 109.46848 * 304.94448 * 1 2 3 26 26 H 1.09004 * 109.47505 * 64.94677 * 1 2 3 27 27 H 0.96705 * 114.00355 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47095 * 296.13661 * 4 2 1 29 29 H 1.08996 * 109.47365 * 56.14148 * 4 2 1 30 30 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47062 * 299.98992 * 8 7 5 32 32 H 1.09003 * 109.47515 * 59.99912 * 8 7 5 33 33 H 1.09003 * 109.47314 * 299.99933 * 9 8 7 34 34 H 1.09002 * 109.47108 * 59.99512 * 9 8 7 35 35 H 0.97000 * 119.99951 * 179.97438 * 13 12 10 36 36 H 1.07997 * 120.00026 * 0.02562 * 19 18 2 37 37 H 1.07999 * 120.00038 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.00124 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99447 * 179.72623 * 22 21 20 40 40 H 1.08000 * 119.99539 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.8046 1.2022 6 8 4.1546 -0.2488 0.3141 7 7 4.2103 -1.4970 2.1472 8 6 5.6724 -1.5775 2.1019 9 6 6.1739 -2.4149 3.2801 10 6 7.6778 -2.4983 3.2332 11 1 8.2216 -2.0031 2.4424 12 6 8.3596 -3.2059 4.2006 13 7 7.6973 -3.8084 5.1639 14 14 10.2238 -3.3086 4.1427 15 1 10.7251 -2.5512 2.9679 16 1 10.7904 -2.7268 5.3860 17 1 10.6379 -4.7300 4.0280 18 6 2.0323 -0.7104 -1.2305 19 6 2.2626 0.0005 -2.3934 20 6 2.7228 -0.6511 -3.5223 21 6 2.9537 -2.0137 -3.4880 22 6 2.7187 -2.7254 -2.3265 23 6 2.2622 -2.0731 -1.1965 24 1 -0.3634 -1.0239 0.0887 25 1 -0.3633 0.5887 0.8424 26 1 -0.3634 0.4352 -0.9310 27 1 2.9703 1.4236 -0.0004 28 1 1.7343 -0.1691 2.1378 29 1 1.6213 -1.7271 1.2844 30 1 3.7219 -1.9414 2.8578 31 1 5.9818 -2.0440 1.1666 32 1 6.0937 -0.5741 2.1644 33 1 5.8645 -1.9482 4.2154 34 1 5.7525 -3.4183 3.2181 35 1 8.1769 -4.3065 5.8442 36 1 2.0830 1.0651 -2.4200 37 1 2.9024 -0.0957 -4.4309 38 1 3.3129 -2.5229 -4.3701 39 1 2.8948 -3.7907 -2.3010 40 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273103098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -78.533624 kcal Electronic energy + Delta-G solvation = -21461.044023 eV Core-core repulsion = 18240.020208 eV Total energy + Delta-G solvation = -3221.023815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51250 -38.66780 -36.89553 -34.83240 -33.04903 -32.73120 -30.82033 -30.21158 -29.47539 -28.00034 -24.68770 -23.23578 -22.37860 -21.19103 -20.54945 -19.85088 -17.71816 -16.90248 -16.44277 -16.30279 -15.43825 -15.35883 -14.68144 -14.53461 -14.48438 -14.28084 -13.75976 -13.52220 -13.20606 -12.77751 -12.53587 -12.45275 -12.33477 -12.22077 -11.80190 -11.72779 -11.23397 -11.19788 -11.06784 -10.76615 -10.65400 -10.37299 -10.05132 -9.84535 -9.50396 -9.22590 -8.81402 -8.64461 -8.53866 -8.38690 -6.12460 -4.15286 1.43364 1.50993 2.92875 3.26296 3.33950 3.38718 3.61056 3.86010 4.19973 4.39313 4.56117 4.64497 4.87716 5.04390 5.06567 5.16642 5.24848 5.28470 5.41549 5.48001 5.56179 5.57325 5.74418 5.80926 6.00031 6.05898 6.11243 6.30115 6.30991 6.53333 6.58654 6.64444 6.69926 6.85370 7.08381 7.47662 7.57576 7.74884 7.85601 7.94756 8.24276 8.59084 8.90916 9.49876 10.99185 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.003801 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.596281 B = 7365.522381 C = 7942.463833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.191 3.809 3 O -0.560 6.560 4 C -0.175 4.175 5 C 0.507 3.493 6 O -0.545 6.545 7 N -0.720 5.720 8 C 0.122 3.878 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.390 0.610 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.398 0.602 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 4.349 -11.580 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.149 3.851 3 O -0.370 6.370 4 C -0.216 4.216 5 C 0.292 3.708 6 O -0.425 6.425 7 N -0.370 5.370 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.131 4.131 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.243 0.757 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.856 4.765 -12.047 20.476 hybrid contribution 1.562 -0.663 0.532 1.779 sum -14.294 4.102 -11.515 18.808 Atomic orbital electron populations 1.21759 0.91646 1.02496 1.03280 1.19615 0.94007 0.82075 0.89376 1.86370 1.29345 1.24645 1.96670 1.22579 0.94034 1.03708 1.01254 1.20454 0.89409 0.78998 0.81894 1.90601 1.69781 1.46692 1.35401 1.46343 1.09616 1.52533 1.28466 1.21714 0.76219 1.00827 1.01237 1.19326 0.96619 0.94719 0.91858 1.21085 0.91186 1.32592 1.11132 0.92234 1.24994 0.98786 0.95243 0.95234 1.69962 1.35620 1.33743 1.13977 0.86463 0.85223 0.77847 0.78089 1.19575 1.20896 1.20914 1.20280 0.98998 0.93991 0.95546 1.20869 0.98714 0.99919 0.92222 1.21087 0.99920 0.94678 0.98284 1.21095 1.00596 0.94528 0.98072 1.21071 0.99518 0.99790 0.93216 1.20971 0.99806 0.94076 0.98225 0.91031 0.91326 0.91524 0.75700 0.87798 0.88190 0.76903 0.92596 0.92592 0.95968 0.95998 0.92882 0.85860 0.86423 0.86493 0.86325 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.82 37.15 0.33 -0.95 16 2 C 0.19 2.29 0.95 -91.77 -0.09 2.21 16 3 O -0.56 -7.69 11.95 -52.48 -0.63 -8.32 16 4 C -0.18 -2.01 4.44 -27.88 -0.12 -2.14 16 5 C 0.51 7.92 6.57 -10.98 -0.07 7.85 16 6 O -0.55 -10.13 12.77 -11.69 -0.15 -10.28 16 7 N -0.72 -11.95 5.56 -60.29 -0.33 -12.29 16 8 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 14 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.09 -1.16 3.16 -104.62 -0.33 -1.49 16 19 C -0.10 -1.30 9.35 -39.58 -0.37 -1.67 16 20 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 23 C -0.11 -1.48 8.31 -39.59 -0.33 -1.81 16 24 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.39 5.73 6.69 45.56 0.30 6.03 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.10 0.93 6.74 -51.93 -0.35 0.58 16 30 H 0.40 5.69 8.47 -40.82 -0.35 5.34 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 1.53 7.48 -52.49 -0.39 1.13 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.37 6.21 -52.49 -0.33 1.04 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -31.45 332.41 -8.44 -39.89 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.30 Total: 9.08 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.75 Total: -14.14 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.40 Total: -37.51 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.78 Total: -18.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.45 -8.44 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.646 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds