Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47268 * 120.00407 * 2 1 3 5 5 C 1.50704 * 109.47053 * 176.14136 * 4 2 1 6 6 O 1.21274 * 119.99963 * 5.43071 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.43681 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47120 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47454 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99959 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47562 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47257 * 120.00450 * 14 12 10 17 17 H 1.48500 * 109.47171 * 240.00035 * 14 12 10 18 18 C 1.50704 * 109.47049 * 239.99936 * 2 1 3 19 19 C 1.38238 * 119.99727 * 89.99761 * 18 2 1 20 20 C 1.38231 * 120.00148 * 180.02562 * 19 18 2 21 21 C 1.38241 * 120.00099 * 359.95619 * 20 19 18 22 22 C 1.38240 * 119.99474 * 0.28173 * 21 20 19 23 23 C 1.38231 * 120.00464 * 270.02271 * 18 2 1 24 24 H 1.09009 * 109.47165 * 184.94977 * 1 2 3 25 25 H 1.09004 * 109.46848 * 304.94448 * 1 2 3 26 26 H 1.09004 * 109.47505 * 64.94677 * 1 2 3 27 27 H 0.96705 * 114.00355 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47095 * 296.13661 * 4 2 1 29 29 H 1.08996 * 109.47365 * 56.14148 * 4 2 1 30 30 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47062 * 299.98992 * 8 7 5 32 32 H 1.09003 * 109.47515 * 59.99912 * 8 7 5 33 33 H 1.09003 * 109.47314 * 299.99933 * 9 8 7 34 34 H 1.09002 * 109.47108 * 59.99512 * 9 8 7 35 35 H 0.97000 * 119.99951 * 179.97438 * 13 12 10 36 36 H 1.07997 * 120.00026 * 0.02562 * 19 18 2 37 37 H 1.07999 * 120.00038 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.00124 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99447 * 179.72623 * 22 21 20 40 40 H 1.08000 * 119.99539 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.8046 1.2022 6 8 4.1546 -0.2488 0.3141 7 7 4.2103 -1.4970 2.1472 8 6 5.6724 -1.5775 2.1019 9 6 6.1739 -2.4149 3.2801 10 6 7.6778 -2.4983 3.2332 11 1 8.2216 -2.0031 2.4424 12 6 8.3596 -3.2059 4.2006 13 7 7.6973 -3.8084 5.1639 14 14 10.2238 -3.3086 4.1427 15 1 10.7251 -2.5512 2.9679 16 1 10.7904 -2.7268 5.3860 17 1 10.6379 -4.7300 4.0280 18 6 2.0323 -0.7104 -1.2305 19 6 2.2626 0.0005 -2.3934 20 6 2.7228 -0.6511 -3.5223 21 6 2.9537 -2.0137 -3.4880 22 6 2.7187 -2.7254 -2.3265 23 6 2.2622 -2.0731 -1.1965 24 1 -0.3634 -1.0239 0.0887 25 1 -0.3633 0.5887 0.8424 26 1 -0.3634 0.4352 -0.9310 27 1 2.9703 1.4236 -0.0004 28 1 1.7343 -0.1691 2.1378 29 1 1.6213 -1.7271 1.2844 30 1 3.7219 -1.9414 2.8578 31 1 5.9818 -2.0440 1.1666 32 1 6.0937 -0.5741 2.1644 33 1 5.8645 -1.9482 4.2154 34 1 5.7525 -3.4183 3.2181 35 1 8.1769 -4.3065 5.8442 36 1 2.0830 1.0651 -2.4200 37 1 2.9024 -0.0957 -4.4309 38 1 3.3129 -2.5229 -4.3701 39 1 2.8948 -3.7907 -2.3010 40 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273103098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -98.706967 kcal Electronic energy + Delta-G solvation = -21461.918805 eV Core-core repulsion = 18240.020208 eV Total energy + Delta-G solvation = -3221.898597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59678 -39.81645 -37.93196 -36.46628 -34.82615 -33.86892 -31.89820 -31.65356 -30.54532 -29.12186 -26.53874 -24.19649 -23.37637 -22.93022 -21.80300 -20.93709 -18.69148 -18.58673 -17.94042 -17.44871 -16.69813 -16.59043 -16.45951 -15.77738 -15.65508 -15.30711 -15.06800 -14.77878 -14.31492 -14.24673 -13.92860 -13.52282 -13.24197 -13.21633 -13.04679 -12.97198 -12.72695 -12.65974 -12.53282 -12.22814 -12.11743 -11.70333 -11.67117 -11.45165 -11.00376 -10.78011 -10.61910 -9.99688 -9.77147 -9.53601 -8.25582 -6.35774 0.49240 0.54577 1.39613 1.41041 1.53721 1.68821 2.26408 2.45354 2.90975 3.09416 3.27029 3.62822 3.69897 3.85506 4.11309 4.15640 4.27112 4.38365 4.47459 4.51683 4.62067 4.62827 4.66677 4.75878 4.85499 4.93207 4.96688 5.15008 5.17701 5.28738 5.30417 5.49359 5.57727 5.59048 5.64538 5.68840 5.78233 6.15544 6.15999 6.64198 6.67429 6.77855 7.32434 7.33816 8.86382 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.003801 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.596281 B = 7365.522381 C = 7942.463833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.185 3.815 3 O -0.568 6.568 4 C -0.166 4.166 5 C 0.506 3.494 6 O -0.575 6.575 7 N -0.718 5.718 8 C 0.144 3.856 9 C 0.023 3.977 10 C -0.546 4.546 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.963 3.037 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.128 4.128 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.383 0.617 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.410 0.590 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 4.097 -11.801 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.144 3.856 3 O -0.378 6.378 4 C -0.205 4.205 5 C 0.294 3.706 6 O -0.456 6.456 7 N -0.368 5.368 8 C 0.020 3.980 9 C -0.015 4.015 10 C -0.585 4.585 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.787 3.213 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.146 4.146 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.235 0.765 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.246 0.754 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.461 4.513 -12.266 21.019 hybrid contribution 1.708 -0.575 0.562 1.888 sum -14.752 3.938 -11.704 19.239 Atomic orbital electron populations 1.21783 0.89479 1.03994 1.03564 1.19876 0.95499 0.81197 0.89053 1.86372 1.28697 1.26012 1.96721 1.22612 0.90267 1.05730 1.01931 1.21172 0.91118 0.77605 0.80657 1.90597 1.70887 1.47645 1.36470 1.46156 1.07798 1.53333 1.29555 1.21138 0.78953 0.99066 0.98825 1.19132 0.95395 0.94374 0.92593 1.21492 0.92957 1.32783 1.11254 0.92550 1.25838 1.03608 0.94761 0.94791 1.70055 1.37537 1.34329 1.14618 0.85429 0.79432 0.78091 0.78306 1.19091 1.20174 1.20176 1.20477 0.99003 0.94246 0.96014 1.21049 0.99504 1.00155 0.92889 1.21393 0.99402 0.95091 0.98848 1.21413 1.00376 0.94680 0.98796 1.21388 0.99440 1.00737 0.93455 1.21193 1.00257 0.94275 0.98914 0.89045 0.90313 0.91892 0.76520 0.85688 0.85336 0.75409 0.93965 0.93799 0.97335 0.97322 0.92527 0.85897 0.84518 0.84444 0.84978 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.82 71.98 0.64 -1.53 16 2 C 0.18 4.13 0.95 -11.54 -0.01 4.12 16 3 O -0.57 -15.17 11.95 -132.49 -1.58 -16.76 16 4 C -0.17 -3.41 4.44 29.85 0.13 -3.27 16 5 C 0.51 15.27 6.57 87.66 0.58 15.84 16 6 O -0.58 -21.24 12.77 13.48 0.17 -21.07 16 7 N -0.72 -23.25 5.56 -463.05 -2.57 -25.83 16 8 C 0.14 6.06 5.61 86.38 0.48 6.54 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 11 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 12 C 0.01 0.49 5.46 84.66 0.46 0.96 16 13 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 14 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 C -0.10 -2.46 3.16 -19.86 -0.06 -2.52 16 19 C -0.12 -3.05 9.35 22.27 0.21 -2.84 16 20 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 21 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 22 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 23 C -0.13 -3.20 8.31 22.27 0.18 -3.02 16 24 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.38 11.28 6.69 -74.05 -0.50 10.79 16 28 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.13 1.94 6.74 -2.39 -0.02 1.92 16 30 H 0.41 11.21 8.47 -92.71 -0.79 10.43 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.12 3.06 7.48 -2.91 -0.02 3.04 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.13 2.74 6.21 -2.91 -0.02 2.73 16 Total: -1.00 -67.23 332.41 1.76 -65.47 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.24 Total: 29.59 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.67 Total: -23.33 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.29 Total: -79.37 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.41 Total: -37.83 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.23 1.76 -65.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.233 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds