Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 O 1.42895 * 109.47081 * 239.99710 * 2 1 3 5 5 C 1.52997 * 109.46805 * 119.99631 * 2 1 3 6 6 N 1.46503 * 109.47176 * 60.00094 * 5 2 1 7 7 C 1.46494 * 119.99677 * 89.99879 * 6 5 2 8 8 C 1.50700 * 109.47154 * 90.00062 * 7 6 5 9 9 C 1.38236 * 120.00085 * 90.00042 * 8 7 6 10 10 C 1.38238 * 120.00195 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00001 * 359.96650 * 10 9 8 12 12 C 1.38240 * 119.99580 * 0.28716 * 11 10 9 13 13 C 1.38232 * 120.00111 * 269.97013 * 8 7 6 14 14 C 1.34775 * 119.99676 * 269.99283 * 6 5 2 15 15 O 1.21692 * 119.99690 * 179.97438 * 14 6 5 16 16 C 1.46368 * 120.00199 * 0.02562 * 14 6 5 17 17 H 1.07995 * 120.00422 * 352.63983 * 16 14 6 18 18 C 1.40051 * 119.99959 * 172.63817 * 16 14 6 19 19 N 1.30672 * 119.99974 * 6.04188 * 18 16 14 20 20 Si 1.86800 * 120.00023 * 186.04002 * 18 16 14 21 21 H 1.48507 * 109.47029 * 94.97942 * 20 18 16 22 22 H 1.48499 * 109.47252 * 214.98098 * 20 18 16 23 23 H 1.48502 * 109.47487 * 334.98354 * 20 18 16 24 24 H 1.09003 * 109.47080 * 300.00222 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00493 * 1 2 3 26 26 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46974 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46748 * 299.99754 * 3 2 1 29 29 H 1.08991 * 109.47424 * 59.99495 * 3 2 1 30 30 H 0.96701 * 114.00052 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.47421 * 299.99938 * 5 2 1 32 32 H 1.09000 * 109.46907 * 180.02562 * 5 2 1 33 33 H 1.08998 * 109.47772 * 329.99941 * 7 6 5 34 34 H 1.09001 * 109.46764 * 209.99760 * 7 6 5 35 35 H 1.08002 * 120.00141 * 359.96982 * 9 8 7 36 36 H 1.08005 * 120.00221 * 180.02562 * 10 9 8 37 37 H 1.07992 * 120.00164 * 180.02562 * 11 10 9 38 38 H 1.08000 * 119.99537 * 179.72404 * 12 11 10 39 39 H 1.08001 * 120.00270 * 0.02562 * 13 8 7 40 40 H 0.96997 * 120.00144 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 2.3434 -3.1592 0.6151 8 6 3.2846 -3.7584 1.6281 9 6 2.8820 -4.8378 2.3920 10 6 3.7456 -5.3878 3.3208 11 6 5.0120 -4.8587 3.4853 12 6 5.4127 -3.7758 2.7251 13 6 4.5508 -3.2289 1.7930 14 6 0.3740 -2.4007 1.8331 15 8 -0.0319 -3.5479 1.8327 16 6 -0.4173 -1.3447 2.4664 17 1 -0.0064 -0.3515 2.5717 18 6 -1.7073 -1.6221 2.9358 19 7 -2.1600 -2.8478 2.9164 20 14 -2.7806 -0.2402 3.5896 21 1 -3.6651 0.2554 2.5045 22 1 -3.6105 -0.7467 4.7121 23 1 -1.9197 0.8695 4.0720 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.9703 -0.7122 -1.2326 31 1 1.6766 -0.2073 2.1393 32 1 3.1299 -0.7208 1.2495 33 1 2.9178 -2.7376 -0.2097 34 1 1.6772 -3.9339 0.2353 35 1 1.8927 -5.2516 2.2632 36 1 3.4311 -6.2315 3.9174 37 1 5.6868 -5.2885 4.2107 38 1 6.4005 -3.3596 2.8568 39 1 4.8654 -2.3855 1.1962 40 1 -3.0533 -3.0400 3.2419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274744859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = -63.011342 kcal Electronic energy + Delta-G solvation = -22542.164372 eV Core-core repulsion = 19321.813653 eV Total energy + Delta-G solvation = -3220.350718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23265 -38.22402 -36.61198 -33.81051 -32.66163 -32.00521 -30.52242 -30.44513 -27.32973 -26.40897 -25.81684 -24.25092 -22.09310 -21.06954 -19.95508 -19.14436 -16.88397 -16.45071 -15.69029 -15.48178 -14.99105 -14.82076 -14.57775 -14.38896 -14.02258 -13.88432 -12.97571 -12.93134 -12.54619 -12.25943 -12.01095 -11.94815 -11.80437 -11.59094 -11.23852 -11.19083 -11.08595 -11.03998 -10.84133 -10.64291 -10.50169 -10.25200 -10.17561 -9.97177 -9.62453 -8.83229 -8.49029 -8.38376 -7.53335 -7.16830 -6.19774 -4.59606 1.77138 1.84918 3.11425 3.19606 3.21303 4.03873 4.19376 4.53414 4.62872 4.83312 5.23339 5.27584 5.31543 5.38474 5.46978 5.49439 5.55533 5.74026 5.82340 5.92019 5.94556 6.03812 6.13389 6.25949 6.33422 6.42668 6.44273 6.50554 6.58249 6.66985 6.75202 6.84822 6.96516 7.17800 7.28930 7.44407 7.46228 7.62631 8.10872 8.13523 8.35018 9.02332 9.43162 10.58098 10.76860 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.007444 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.088563 B = 3760.758022 C = 5049.215593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.109 3.891 3 C -0.174 4.174 4 O -0.555 6.555 5 C 0.107 3.893 6 N -0.625 5.625 7 C 0.165 3.835 8 C -0.087 4.087 9 C -0.089 4.089 10 C -0.126 4.126 11 C -0.132 4.132 12 C -0.131 4.131 13 C -0.116 4.116 14 C 0.563 3.437 15 O -0.573 6.573 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.089 3.911 19 N -0.766 5.766 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.361 0.639 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.376 4.098 -2.422 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 C -0.233 4.233 4 O -0.360 6.360 5 C -0.019 4.019 6 N -0.361 5.361 7 C 0.041 3.959 8 C -0.089 4.089 9 C -0.108 4.108 10 C -0.144 4.144 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.135 4.135 14 C 0.369 3.631 15 O -0.456 6.456 16 C -0.575 4.575 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.395 5.395 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.206 0.794 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.308 3.262 -2.484 11.094 hybrid contribution 0.174 0.949 0.603 1.137 sum 10.483 4.211 -1.881 11.452 Atomic orbital electron populations 1.21872 0.91379 1.04531 1.00622 1.21859 0.96439 0.89439 0.85527 1.22454 1.00546 0.97740 1.02529 1.86634 1.25009 1.79866 1.44473 1.21846 0.96767 0.85165 0.98074 1.47911 1.22288 1.04622 1.61277 1.19960 0.92182 0.92075 0.91639 1.20671 0.94431 0.95142 0.98615 1.21340 0.99551 0.95473 0.94434 1.21155 0.94128 1.00355 0.98768 1.21013 0.96516 0.97426 1.00044 1.20987 0.99339 0.97275 0.97351 1.20965 0.93956 0.99622 0.98932 1.18181 0.78009 0.89297 0.77636 1.90585 1.69861 1.22236 1.62890 1.20960 0.99708 0.96556 1.40285 0.91024 1.25657 0.98105 0.95414 0.93859 1.70011 1.16083 1.18943 1.34469 0.86531 0.80418 0.81961 0.78985 1.19708 1.20517 1.18882 0.90418 0.94533 0.90163 0.93058 0.92283 0.91594 0.79408 0.89573 0.93155 0.91760 0.90280 0.85100 0.86665 0.86946 0.86914 0.86942 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.26 37.16 0.27 -2.18 16 2 C 0.11 1.78 1.17 -90.62 -0.11 1.68 16 3 C -0.17 -2.25 8.82 37.16 0.33 -1.92 16 4 O -0.56 -8.94 11.70 -35.23 -0.41 -9.35 16 5 C 0.11 1.89 4.66 -4.04 -0.02 1.87 16 6 N -0.63 -13.44 2.18 -176.73 -0.39 -13.83 16 7 C 0.17 3.21 5.27 -5.20 -0.03 3.18 16 8 C -0.09 -1.59 5.46 -104.62 -0.57 -2.16 16 9 C -0.09 -1.73 9.70 -39.58 -0.38 -2.11 16 10 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 11 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 12 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 13 C -0.12 -1.80 9.70 -39.58 -0.38 -2.18 16 14 C 0.56 15.07 6.20 -12.99 -0.08 14.99 16 15 O -0.57 -17.56 14.15 5.20 0.07 -17.48 16 16 C -0.54 -14.15 6.33 -35.63 -0.23 -14.38 16 17 H 0.07 1.73 4.79 -52.49 -0.25 1.48 16 18 C 0.09 2.39 5.49 -17.37 -0.10 2.29 16 19 N -0.77 -22.25 11.86 55.55 0.66 -21.59 16 20 Si 0.90 19.54 29.56 -169.99 -5.03 14.51 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.08 1.50 6.38 -51.93 -0.33 1.17 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.88 6.01 -51.93 -0.31 1.57 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.36 4.28 8.79 45.56 0.40 4.68 16 31 H 0.09 1.62 6.01 -51.93 -0.31 1.31 16 32 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.06 1.06 6.82 -51.93 -0.35 0.70 16 34 H 0.08 1.73 7.36 -51.93 -0.38 1.35 16 35 H 0.13 2.85 7.58 -52.49 -0.40 2.45 16 36 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -32.52 325.89 -7.54 -40.07 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.88 Total: 10.75 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.49 Total: -8.00 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.27 Total: -35.42 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.34 Total: -26.83 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.52 -7.54 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.942 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds