Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 O 1.42895 * 109.47081 * 239.99710 * 2 1 3 5 5 C 1.52997 * 109.46805 * 119.99631 * 2 1 3 6 6 N 1.46503 * 109.47176 * 60.00094 * 5 2 1 7 7 C 1.46494 * 119.99677 * 89.99879 * 6 5 2 8 8 C 1.50700 * 109.47154 * 90.00062 * 7 6 5 9 9 C 1.38236 * 120.00085 * 90.00042 * 8 7 6 10 10 C 1.38238 * 120.00195 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00001 * 359.96650 * 10 9 8 12 12 C 1.38240 * 119.99580 * 0.28716 * 11 10 9 13 13 C 1.38232 * 120.00111 * 269.97013 * 8 7 6 14 14 C 1.34775 * 119.99676 * 269.99283 * 6 5 2 15 15 O 1.21692 * 119.99690 * 179.97438 * 14 6 5 16 16 C 1.46368 * 120.00199 * 0.02562 * 14 6 5 17 17 H 1.07995 * 120.00422 * 352.63983 * 16 14 6 18 18 C 1.40051 * 119.99959 * 172.63817 * 16 14 6 19 19 N 1.30672 * 119.99974 * 6.04188 * 18 16 14 20 20 Si 1.86800 * 120.00023 * 186.04002 * 18 16 14 21 21 H 1.48507 * 109.47029 * 94.97942 * 20 18 16 22 22 H 1.48499 * 109.47252 * 214.98098 * 20 18 16 23 23 H 1.48502 * 109.47487 * 334.98354 * 20 18 16 24 24 H 1.09003 * 109.47080 * 300.00222 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00493 * 1 2 3 26 26 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46974 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46748 * 299.99754 * 3 2 1 29 29 H 1.08991 * 109.47424 * 59.99495 * 3 2 1 30 30 H 0.96701 * 114.00052 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.47421 * 299.99938 * 5 2 1 32 32 H 1.09000 * 109.46907 * 180.02562 * 5 2 1 33 33 H 1.08998 * 109.47772 * 329.99941 * 7 6 5 34 34 H 1.09001 * 109.46764 * 209.99760 * 7 6 5 35 35 H 1.08002 * 120.00141 * 359.96982 * 9 8 7 36 36 H 1.08005 * 120.00221 * 180.02562 * 10 9 8 37 37 H 1.07992 * 120.00164 * 180.02562 * 11 10 9 38 38 H 1.08000 * 119.99537 * 179.72404 * 12 11 10 39 39 H 1.08001 * 120.00270 * 0.02562 * 13 8 7 40 40 H 0.96997 * 120.00144 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 2.3434 -3.1592 0.6151 8 6 3.2846 -3.7584 1.6281 9 6 2.8820 -4.8378 2.3920 10 6 3.7456 -5.3878 3.3208 11 6 5.0120 -4.8587 3.4853 12 6 5.4127 -3.7758 2.7251 13 6 4.5508 -3.2289 1.7930 14 6 0.3740 -2.4007 1.8331 15 8 -0.0319 -3.5479 1.8327 16 6 -0.4173 -1.3447 2.4664 17 1 -0.0064 -0.3515 2.5717 18 6 -1.7073 -1.6221 2.9358 19 7 -2.1600 -2.8478 2.9164 20 14 -2.7806 -0.2402 3.5896 21 1 -3.6651 0.2554 2.5045 22 1 -3.6105 -0.7467 4.7121 23 1 -1.9197 0.8695 4.0720 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.9703 -0.7122 -1.2326 31 1 1.6766 -0.2073 2.1393 32 1 3.1299 -0.7208 1.2495 33 1 2.9178 -2.7376 -0.2097 34 1 1.6772 -3.9339 0.2353 35 1 1.8927 -5.2516 2.2632 36 1 3.4311 -6.2315 3.9174 37 1 5.6868 -5.2885 4.2107 38 1 6.4005 -3.3596 2.8568 39 1 4.8654 -2.3855 1.1962 40 1 -3.0533 -3.0400 3.2419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274744859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = -85.432427 kcal Electronic energy + Delta-G solvation = -22543.136623 eV Core-core repulsion = 19321.813653 eV Total energy + Delta-G solvation = -3221.322970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72661 -39.57313 -38.30796 -35.54245 -34.58229 -33.47868 -31.91336 -31.70680 -29.01009 -27.90307 -27.32623 -25.89593 -23.35772 -22.52409 -21.33159 -20.89219 -18.58353 -17.75629 -17.65723 -16.87695 -16.54044 -16.26795 -16.08199 -15.69726 -15.46264 -15.40825 -14.46655 -14.25793 -14.20753 -13.68964 -13.47745 -13.31992 -13.19811 -13.08003 -12.93203 -12.78119 -12.67590 -12.50302 -12.33749 -12.07851 -12.01780 -11.88337 -11.72978 -11.52435 -10.97466 -10.83767 -9.86336 -9.75148 -9.46339 -8.90518 -8.21734 -6.68201 0.49635 0.56949 1.38667 1.39214 1.53169 2.24666 2.54527 2.77055 3.18062 3.54254 3.70081 3.98377 3.99578 4.12034 4.18086 4.23145 4.27917 4.34418 4.45811 4.67035 4.68170 4.83453 4.86293 4.89164 4.97426 5.09162 5.13507 5.18858 5.22898 5.26850 5.36466 5.46019 5.61859 5.66784 5.67537 5.76913 5.93936 6.20315 6.23508 6.48976 6.96170 7.07620 7.54091 8.58288 8.77275 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.007444 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.088563 B = 3760.758022 C = 5049.215593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.116 3.884 3 C -0.164 4.164 4 O -0.572 6.572 5 C 0.103 3.897 6 N -0.624 5.624 7 C 0.171 3.829 8 C -0.107 4.107 9 C -0.126 4.126 10 C -0.137 4.137 11 C -0.125 4.125 12 C -0.122 4.122 13 C -0.111 4.111 14 C 0.549 3.451 15 O -0.629 6.629 16 C -0.549 4.549 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.825 5.825 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.242 1.242 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.027 0.973 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.382 0.618 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.902 7.403 -2.036 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 C -0.222 4.222 4 O -0.379 6.379 5 C -0.021 4.021 6 N -0.357 5.357 7 C 0.047 3.953 8 C -0.108 4.108 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.129 4.129 14 C 0.355 3.645 15 O -0.515 6.515 16 C -0.586 4.586 17 H 0.110 0.890 18 C -0.183 4.183 19 N -0.456 5.456 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.165 1.165 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.907 6.607 -2.122 15.542 hybrid contribution -0.798 -0.150 0.427 0.917 sum 13.109 6.457 -1.695 14.711 Atomic orbital electron populations 1.21762 0.94313 1.01114 1.00959 1.21678 0.94265 0.91775 0.84859 1.22336 1.02424 0.94378 1.03059 1.86599 1.27186 1.80127 1.44026 1.22109 0.98931 0.82638 0.98458 1.47696 1.21130 1.06882 1.60036 1.19952 0.91649 0.90715 0.92969 1.20573 0.95894 0.95561 0.98807 1.21172 0.98494 0.97534 0.97301 1.21324 0.95042 1.00887 0.98268 1.21441 0.95564 0.97141 1.00198 1.21503 1.00665 0.96213 0.95577 1.21272 0.92275 1.00098 0.99297 1.18540 0.79517 0.88660 0.77775 1.90547 1.71787 1.24296 1.64908 1.21375 1.00076 0.97202 1.39905 0.88983 1.26818 0.99739 0.98047 0.93718 1.70212 1.16732 1.22033 1.36574 0.85319 0.78296 0.78575 0.78201 1.18976 1.20473 1.16515 0.90779 0.93463 0.95373 0.90010 0.91767 0.91105 0.76914 0.90696 0.89281 0.88288 0.94848 0.89934 0.85830 0.83387 0.82618 0.83596 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 7.26 71.98 0.52 -4.26 16 2 C 0.12 3.53 1.17 -10.79 -0.01 3.51 16 3 C -0.16 -3.52 8.82 71.98 0.63 -2.88 16 4 O -0.57 -17.05 11.70 -148.98 -1.74 -18.79 16 5 C 0.10 3.42 4.66 86.38 0.40 3.83 16 6 N -0.62 -27.44 2.18 -831.27 -1.81 -29.25 16 7 C 0.17 6.84 5.27 85.63 0.45 7.29 16 8 C -0.11 -3.95 5.46 -19.87 -0.11 -4.06 16 9 C -0.13 -5.21 9.70 22.27 0.22 -5.00 16 10 C -0.14 -4.59 10.05 22.27 0.22 -4.36 16 11 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 12 C -0.12 -2.91 10.05 22.27 0.22 -2.68 16 13 C -0.11 -3.06 9.70 22.27 0.22 -2.85 16 14 C 0.55 31.17 6.20 86.36 0.54 31.71 16 15 O -0.63 -42.00 14.15 -4.32 -0.06 -42.06 16 16 C -0.55 -29.83 6.33 24.83 0.16 -29.68 16 17 H 0.09 4.45 4.79 -2.91 -0.01 4.44 16 18 C 0.03 1.72 5.49 85.31 0.47 2.19 16 19 N -0.83 -50.97 11.86 21.84 0.26 -50.71 16 20 Si 0.98 40.83 29.56 68.60 2.03 42.86 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.24 -9.17 7.11 99.48 0.71 -8.46 16 24 H 0.07 2.83 6.38 -2.39 -0.02 2.82 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.36 6.01 -2.39 -0.01 1.34 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.38 7.52 8.79 -74.06 -0.65 6.87 16 31 H 0.07 2.68 6.01 -2.39 -0.01 2.67 16 32 H 0.09 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.10 3.15 6.82 -2.39 -0.02 3.13 16 34 H 0.03 1.61 7.36 -2.39 -0.02 1.59 16 35 H 0.08 4.12 7.58 -2.91 -0.02 4.10 16 36 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 Total: -1.00 -79.51 325.89 3.22 -76.29 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.40 Total: 31.97 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.15 Total: -10.30 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.55 Total: -79.97 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -1.80 Total: -60.85 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -79.51 3.22 -76.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.144 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds