Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47506 * 2 1 4 4 O 1.42901 * 109.47240 * 239.99894 * 2 1 3 5 5 C 1.53005 * 109.46990 * 120.00395 * 2 1 3 6 6 C 1.52990 * 109.47350 * 59.99885 * 5 2 1 7 7 N 1.46498 * 109.47234 * 180.02562 * 6 5 2 8 8 C 1.34782 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.47891 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.39923 * 120.02411 * 359.72358 * 10 8 7 12 12 C 1.38333 * 120.35611 * 179.74075 * 11 10 8 13 13 C 1.37755 * 120.40861 * 0.56181 * 12 11 10 14 14 C 1.40744 * 120.04191 * 359.69635 * 13 12 11 15 15 C 1.41438 * 120.17967 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99591 * 24.43812 * 15 14 13 17 17 C 1.39935 * 120.00120 * 204.44034 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.87513 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.88047 * 17 15 14 20 20 H 1.48502 * 109.47323 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46963 * 299.99731 * 19 17 15 23 23 C 1.38991 * 120.02263 * 179.97438 * 10 8 7 24 24 H 1.08995 * 109.47203 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.47369 * 60.00022 * 1 2 3 26 26 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47436 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46788 * 300.00333 * 3 2 1 29 29 H 1.09006 * 109.46584 * 60.00096 * 3 2 1 30 30 H 0.96695 * 114.00506 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46815 * 299.99616 * 5 2 1 32 32 H 1.09006 * 109.46845 * 180.02562 * 5 2 1 33 33 H 1.09006 * 109.47437 * 299.99993 * 6 5 2 34 34 H 1.09004 * 109.47381 * 60.00078 * 6 5 2 35 35 H 0.97000 * 120.00134 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.81786 * 0.02562 * 11 10 8 37 37 H 1.07999 * 119.78886 * 180.28122 * 12 11 10 38 38 H 1.07995 * 119.97665 * 179.72109 * 13 12 11 39 39 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.20608 * 359.95800 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7214 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0178 -2.8543 2.4456 8 6 1.6916 -4.1445 2.6592 9 8 0.9924 -4.7349 1.8593 10 6 2.1846 -4.8416 3.8667 11 6 2.9943 -4.1640 4.7849 12 6 3.4548 -4.8079 5.9194 13 6 3.1313 -6.1264 6.1526 14 6 2.3223 -6.8259 5.2376 15 6 1.9879 -8.1796 5.4744 16 1 1.9935 -8.5689 6.4818 17 6 1.6498 -9.0145 4.4035 18 7 1.9699 -8.6735 3.1818 19 14 0.7411 -10.6159 4.7185 20 1 -0.5603 -10.3264 5.3725 21 1 0.5023 -11.3116 3.4285 22 1 1.5585 -11.4827 5.6050 23 6 1.8481 -6.1720 4.0877 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 2.9702 -0.7122 -1.2327 31 1 1.6766 -0.2075 2.1393 32 1 3.1300 -0.7210 1.2495 33 1 0.4399 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3592 35 1 2.5749 -2.3827 3.0845 36 1 3.2574 -3.1314 4.6092 37 1 4.0755 -4.2747 6.6242 38 1 3.4983 -6.6236 7.0383 39 1 1.7352 -9.2520 2.4395 40 1 1.2261 -6.6999 3.3800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274812498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = -88.124559 kcal Electronic energy + Delta-G solvation = -20910.790030 eV Core-core repulsion = 17689.350321 eV Total energy + Delta-G solvation = -3221.439709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.39426 -38.53806 -36.96859 -34.60379 -33.72400 -32.70478 -30.47510 -29.44451 -28.76864 -27.61504 -25.32924 -23.78210 -21.84925 -20.90893 -20.51819 -19.46131 -17.77418 -16.61645 -16.15257 -15.70307 -15.66048 -15.07826 -14.66920 -14.63623 -14.37432 -13.66820 -13.38131 -13.16027 -13.01916 -12.56759 -12.47117 -12.44719 -12.30229 -12.00291 -11.69813 -11.62485 -11.32952 -11.12863 -11.04689 -10.83660 -10.71578 -10.49519 -10.19011 -10.01265 -9.68924 -9.20074 -8.97954 -8.60007 -7.62053 -7.51596 -6.79278 -4.40838 2.23109 2.82965 3.08253 3.10065 3.17453 3.64796 3.89289 3.93306 4.04661 4.53633 4.60327 4.65126 4.78086 5.07002 5.15496 5.35616 5.45639 5.52877 5.61198 5.66639 5.67898 5.74715 5.86454 5.91053 6.06559 6.16062 6.20912 6.27687 6.72614 6.89994 6.99660 7.03037 7.22072 7.38894 7.48749 7.70902 7.76939 7.93531 8.11539 8.20528 8.51259 8.80812 8.84294 8.99068 10.15386 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.003581 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.450916 B = 7816.146946 C = 8573.641288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.130 3.870 3 C -0.177 4.177 4 O -0.558 6.558 5 C -0.158 4.158 6 C 0.123 3.877 7 N -0.739 5.739 8 C 0.562 3.438 9 O -0.545 6.545 10 C -0.128 4.128 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.376 0.624 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 15.293 -3.893 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.089 3.911 3 C -0.235 4.235 4 O -0.364 6.364 5 C -0.196 4.196 6 C 0.000 4.000 7 N -0.393 5.393 8 C 0.353 3.647 9 O -0.423 6.423 10 C -0.131 4.131 11 C -0.240 4.240 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.113 4.113 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.223 0.777 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.390 14.714 -4.858 15.500 hybrid contribution 0.667 -0.317 0.537 0.913 sum 0.277 14.397 -4.320 15.034 Atomic orbital electron populations 1.21842 0.92561 1.03526 1.02306 1.21123 0.95184 0.90384 0.84376 1.22487 1.01460 0.96655 1.02849 1.86589 1.26671 1.79460 1.43635 1.22501 1.01590 0.96262 0.99220 1.21215 0.99300 0.90797 0.88718 1.45982 1.55263 1.12775 1.25311 1.18852 0.79120 0.80582 0.86189 1.90698 1.38249 1.66149 1.47251 1.19492 1.03214 0.95717 0.94686 1.20327 1.07592 0.98101 0.97940 1.20429 0.99725 0.94996 0.96433 1.21090 1.04642 0.95082 1.02509 1.17598 0.88864 0.93130 0.90758 1.19562 1.40616 0.94173 0.94580 0.90102 1.25969 0.93763 1.00375 0.94511 1.69780 1.33515 1.37198 1.00151 0.86318 0.80749 0.80735 0.78677 1.18719 1.20205 1.18974 1.21644 0.99626 0.90990 0.99011 0.91111 0.91936 0.91106 0.92293 0.91712 0.91510 0.77708 0.90383 0.91020 0.91691 0.91255 0.76785 0.89319 0.88942 0.88636 0.90345 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.49 37.16 0.32 -1.07 16 2 C 0.13 1.20 1.09 -90.62 -0.10 1.11 16 3 C -0.18 -1.26 8.82 37.16 0.33 -0.93 16 4 O -0.56 -5.88 12.31 -35.23 -0.43 -6.32 16 5 C -0.16 -1.55 4.57 -26.73 -0.12 -1.67 16 6 C 0.12 1.77 5.18 -4.05 -0.02 1.75 16 7 N -0.74 -12.42 5.51 -61.24 -0.34 -12.76 16 8 C 0.56 12.61 7.77 -12.31 -0.10 12.52 16 9 O -0.55 -14.13 16.33 5.33 0.09 -14.04 16 10 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 11 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.09 10.01 -39.72 -0.40 -2.48 16 13 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 14 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 15 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 16 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.86 5.14 -17.35 -0.09 1.78 16 18 N -0.78 -20.93 10.96 55.55 0.61 -20.33 16 19 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 23 C -0.09 -2.50 8.24 -38.44 -0.32 -2.82 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.38 2.69 9.05 45.56 0.41 3.10 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 34 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 35 H 0.40 5.67 6.49 -40.82 -0.26 5.41 16 36 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 40 H 0.13 3.91 5.74 -52.49 -0.30 3.61 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -31.28 332.64 -7.80 -39.09 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.91 Total: 11.92 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.80 Total: -16.46 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.27 Total: -33.08 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.35 Total: -20.36 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.28 -7.80 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274812498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.038 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds