Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47506 * 2 1 4 4 O 1.42901 * 109.47240 * 239.99894 * 2 1 3 5 5 C 1.53005 * 109.46990 * 120.00395 * 2 1 3 6 6 C 1.52990 * 109.47350 * 59.99885 * 5 2 1 7 7 N 1.46498 * 109.47234 * 180.02562 * 6 5 2 8 8 C 1.34782 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.47891 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.39923 * 120.02411 * 359.72358 * 10 8 7 12 12 C 1.38333 * 120.35611 * 179.74075 * 11 10 8 13 13 C 1.37755 * 120.40861 * 0.56181 * 12 11 10 14 14 C 1.40744 * 120.04191 * 359.69635 * 13 12 11 15 15 C 1.41438 * 120.17967 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99591 * 24.43812 * 15 14 13 17 17 C 1.39935 * 120.00120 * 204.44034 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.87513 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.88047 * 17 15 14 20 20 H 1.48502 * 109.47323 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46963 * 299.99731 * 19 17 15 23 23 C 1.38991 * 120.02263 * 179.97438 * 10 8 7 24 24 H 1.08995 * 109.47203 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.47369 * 60.00022 * 1 2 3 26 26 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47436 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46788 * 300.00333 * 3 2 1 29 29 H 1.09006 * 109.46584 * 60.00096 * 3 2 1 30 30 H 0.96695 * 114.00506 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46815 * 299.99616 * 5 2 1 32 32 H 1.09006 * 109.46845 * 180.02562 * 5 2 1 33 33 H 1.09006 * 109.47437 * 299.99993 * 6 5 2 34 34 H 1.09004 * 109.47381 * 60.00078 * 6 5 2 35 35 H 0.97000 * 120.00134 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.81786 * 0.02562 * 11 10 8 37 37 H 1.07999 * 119.78886 * 180.28122 * 12 11 10 38 38 H 1.07995 * 119.97665 * 179.72109 * 13 12 11 39 39 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.20608 * 359.95800 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7214 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0178 -2.8543 2.4456 8 6 1.6916 -4.1445 2.6592 9 8 0.9924 -4.7349 1.8593 10 6 2.1846 -4.8416 3.8667 11 6 2.9943 -4.1640 4.7849 12 6 3.4548 -4.8079 5.9194 13 6 3.1313 -6.1264 6.1526 14 6 2.3223 -6.8259 5.2376 15 6 1.9879 -8.1796 5.4744 16 1 1.9935 -8.5689 6.4818 17 6 1.6498 -9.0145 4.4035 18 7 1.9699 -8.6735 3.1818 19 14 0.7411 -10.6159 4.7185 20 1 -0.5603 -10.3264 5.3725 21 1 0.5023 -11.3116 3.4285 22 1 1.5585 -11.4827 5.6050 23 6 1.8481 -6.1720 4.0877 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 2.9702 -0.7122 -1.2327 31 1 1.6766 -0.2075 2.1393 32 1 3.1300 -0.7210 1.2495 33 1 0.4399 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3592 35 1 2.5749 -2.3827 3.0845 36 1 3.2574 -3.1314 4.6092 37 1 4.0755 -4.2747 6.6242 38 1 3.4983 -6.6236 7.0383 39 1 1.7352 -9.2520 2.4395 40 1 1.2261 -6.6999 3.3800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274812498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = -110.439102 kcal Electronic energy + Delta-G solvation = -20911.757662 eV Core-core repulsion = 17689.350321 eV Total energy + Delta-G solvation = -3222.407340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96135 -39.54462 -38.74557 -36.04298 -35.55292 -33.66351 -32.16094 -31.28709 -29.95569 -28.28358 -27.20898 -25.11461 -23.38095 -22.72672 -21.52146 -20.94827 -19.52904 -18.03340 -17.43430 -17.04669 -16.79073 -16.69797 -16.38457 -15.82531 -15.63450 -15.15891 -14.86893 -14.69259 -14.36618 -14.26807 -13.71834 -13.48022 -13.19239 -13.01788 -12.94168 -12.80930 -12.72224 -12.53768 -12.47061 -12.25547 -12.19113 -11.92259 -11.55774 -11.51569 -11.07114 -11.03728 -10.67500 -10.13926 -9.47311 -9.38686 -8.67028 -6.38716 0.37645 1.01172 1.35670 1.47711 1.50354 2.09397 2.18864 2.23939 2.78419 3.34839 3.69691 3.75944 3.84356 3.99851 4.07629 4.23306 4.35274 4.43824 4.59506 4.60356 4.75253 4.86604 4.88449 4.90890 5.01429 5.02679 5.08344 5.14439 5.19698 5.30469 5.31361 5.37541 5.46737 5.52143 5.86518 5.92252 6.05132 6.28544 6.51240 6.69339 6.87277 6.90230 6.94591 7.31418 8.29516 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.003581 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.450916 B = 7816.146946 C = 8573.641288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 C -0.170 4.170 4 O -0.581 6.581 5 C -0.145 4.145 6 C 0.122 3.878 7 N -0.712 5.712 8 C 0.556 3.444 9 O -0.593 6.593 10 C -0.140 4.140 11 C -0.197 4.197 12 C -0.095 4.095 13 C -0.218 4.218 14 C 0.067 3.933 15 C -0.499 4.499 16 H 0.085 0.915 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.251 1.251 23 C -0.133 4.133 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.389 0.611 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.414 0.586 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 18.042 -2.543 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.088 3.912 3 C -0.227 4.227 4 O -0.389 6.389 5 C -0.183 4.183 6 C -0.001 4.001 7 N -0.365 5.365 8 C 0.346 3.654 9 O -0.475 6.475 10 C -0.143 4.143 11 C -0.217 4.217 12 C -0.113 4.113 13 C -0.237 4.237 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.154 4.154 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.238 0.762 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.014 17.527 -3.484 17.899 hybrid contribution 0.319 -0.949 0.127 1.009 sum 1.332 16.578 -3.358 16.967 Atomic orbital electron populations 1.21908 0.93339 1.02141 1.03319 1.21211 0.94753 0.91676 0.83602 1.22408 1.02245 0.94623 1.03429 1.86568 1.28112 1.79920 1.44343 1.22471 1.02685 0.92702 1.00453 1.21354 0.98734 0.93321 0.86681 1.45765 1.53918 1.10793 1.26048 1.18821 0.78919 0.82182 0.85471 1.90674 1.40506 1.67670 1.48620 1.19800 1.03494 0.95083 0.95937 1.20865 1.04515 0.99991 0.96289 1.20940 0.99185 0.94062 0.97075 1.21421 1.03714 0.96438 1.02175 1.17946 0.90076 0.93879 0.91629 1.19855 1.42883 0.94926 0.95124 0.89692 1.26876 0.93948 1.03902 0.93910 1.69889 1.35304 1.38789 1.01124 0.85233 0.79303 0.76360 0.78738 1.18509 1.19732 1.17489 1.21446 1.01576 0.92737 0.99597 0.89358 0.91772 0.93639 0.91005 0.91866 0.90232 0.76181 0.88406 0.89073 0.92916 0.93272 0.74808 0.84325 0.84143 0.87283 0.90333 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.49 71.98 0.61 -2.08 16 2 C 0.13 2.08 1.09 -10.79 -0.01 2.06 16 3 C -0.17 -1.82 8.82 71.98 0.63 -1.19 16 4 O -0.58 -11.54 12.31 -148.98 -1.83 -13.37 16 5 C -0.15 -2.39 4.57 30.59 0.14 -2.25 16 6 C 0.12 3.38 5.18 86.38 0.45 3.83 16 7 N -0.71 -22.62 5.51 -465.93 -2.57 -25.19 16 8 C 0.56 25.18 7.77 86.80 0.67 25.85 16 9 O -0.59 -32.26 16.33 -3.86 -0.06 -32.32 16 10 C -0.14 -6.71 5.87 -20.13 -0.12 -6.83 16 11 C -0.20 -7.65 9.55 22.70 0.22 -7.44 16 12 C -0.09 -3.71 10.01 22.18 0.22 -3.48 16 13 C -0.22 -10.18 9.78 22.77 0.22 -9.95 16 14 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 15 C -0.50 -27.47 9.05 23.47 0.21 -27.26 16 16 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 17 C 0.03 1.52 5.14 85.25 0.44 1.96 16 18 N -0.83 -46.98 10.96 21.82 0.24 -46.74 16 19 Si 0.98 40.21 29.59 68.60 2.03 42.24 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.13 -7.53 8.24 23.01 0.19 -7.34 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 1.03 6.43 -2.39 -0.02 1.02 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.39 4.91 9.05 -74.06 -0.67 4.24 16 31 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.62 6.43 -2.38 -0.02 1.60 16 34 H 0.05 1.58 7.68 -2.38 -0.02 1.57 16 35 H 0.41 10.13 6.49 -92.71 -0.60 9.53 16 36 H 0.14 3.95 6.38 -2.91 -0.02 3.93 16 37 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 40 H 0.10 6.12 5.74 -2.91 -0.02 6.10 16 Total: -1.00 -73.80 332.64 1.36 -72.45 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.21 Total: 33.47 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.76 Total: -30.54 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.33 Total: -71.92 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.90 Total: -45.69 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -73.80 1.36 -72.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274812498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.993 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds