Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46756 * 2 1 4 4 O 1.42896 * 109.47275 * 240.00278 * 2 1 3 5 5 C 1.53000 * 109.47160 * 119.99809 * 2 1 3 6 6 C 1.52999 * 109.47108 * 184.99755 * 5 2 1 7 7 N 1.46492 * 109.47134 * 180.02562 * 6 5 2 8 8 C 1.34777 * 120.00403 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99740 * 0.02562 * 8 7 6 10 10 C 1.47639 * 120.00339 * 180.02562 * 8 7 6 11 11 C 1.40007 * 119.89573 * 0.24611 * 10 8 7 12 12 C 1.36318 * 120.10468 * 180.25591 * 11 10 8 13 13 C 1.40884 * 119.89177 * 359.47662 * 12 11 10 14 14 C 1.41116 * 120.10368 * 180.29746 * 13 12 11 15 15 H 1.07997 * 120.00134 * 154.53831 * 14 13 12 16 16 C 1.40227 * 119.99714 * 334.53632 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.04996 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.05218 * 16 14 13 19 19 H 1.48501 * 109.47314 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47265 * 119.99809 * 18 16 14 21 21 H 1.48498 * 109.47305 * 239.99792 * 18 16 14 22 22 C 1.40889 * 119.79628 * 0.27580 * 13 12 11 23 23 C 1.36316 * 119.88883 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.47052 * 299.99785 * 1 2 3 25 25 H 1.08998 * 109.47206 * 60.00109 * 1 2 3 26 26 H 1.08997 * 109.46491 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46475 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47175 * 299.99911 * 3 2 1 29 29 H 1.08994 * 109.46969 * 60.00185 * 3 2 1 30 30 H 0.96700 * 114.00000 * 300.00167 * 4 2 1 31 31 H 1.08997 * 109.46730 * 65.00247 * 5 2 1 32 32 H 1.08995 * 109.47087 * 305.00602 * 5 2 1 33 33 H 1.09000 * 109.46513 * 60.00323 * 6 5 2 34 34 H 1.08994 * 109.47508 * 300.00819 * 6 5 2 35 35 H 0.97005 * 120.00342 * 0.02562 * 7 6 5 36 36 H 1.08000 * 119.95276 * 0.03420 * 11 10 8 37 37 H 1.08007 * 120.05277 * 179.74755 * 12 11 10 38 38 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.05358 * 180.02562 * 22 13 12 40 40 H 1.08002 * 119.94674 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 3.5649 -0.6133 1.3137 7 7 4.0533 -1.3043 2.5095 8 6 5.3741 -1.3398 2.7751 9 8 6.1604 -0.7979 2.0225 10 6 5.8664 -2.0368 3.9800 11 6 4.9596 -2.6646 4.8424 12 6 5.4089 -3.3048 5.9589 13 6 6.7892 -3.3436 6.2384 14 6 7.2598 -4.0106 7.3895 15 1 8.2660 -4.4020 7.4133 16 6 6.4208 -4.1650 8.5024 17 7 5.3481 -3.4285 8.6190 18 14 6.8370 -5.4238 9.8183 19 1 8.0944 -6.1245 9.4530 20 1 7.0139 -4.7364 11.1227 21 1 5.7335 -6.4117 9.9251 22 6 7.6983 -2.7149 5.3648 23 6 7.2391 -2.0727 4.2535 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.7211 -1.5951 -1.2330 31 1 1.7518 -1.7714 1.2056 32 1 1.6054 -0.2617 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0727 0.4259 35 1 3.4260 -1.7364 3.1102 36 1 3.9020 -2.6385 4.6248 37 1 4.7082 -3.7853 6.6257 38 1 4.7675 -3.5356 9.3888 39 1 8.7574 -2.7424 5.5748 40 1 7.9352 -1.5901 3.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274980671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -91.944805 kcal Electronic energy + Delta-G solvation = -20699.240935 eV Core-core repulsion = 17477.635568 eV Total energy + Delta-G solvation = -3221.605368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.32950 -38.50797 -37.06961 -34.56311 -33.86259 -32.70010 -30.47394 -29.45742 -28.86153 -27.60770 -25.90275 -23.38711 -21.67672 -20.89946 -20.47461 -19.54191 -17.53232 -17.07369 -16.26936 -15.80102 -15.66218 -15.37820 -14.64102 -14.39813 -14.04290 -13.75284 -13.33847 -13.17828 -12.99666 -12.67175 -12.45198 -12.28518 -12.11173 -11.99346 -11.90496 -11.62859 -11.42465 -11.30417 -11.19782 -10.94569 -10.78728 -10.64258 -10.17577 -10.02822 -9.56572 -9.36709 -8.93865 -8.54403 -7.72441 -7.53429 -7.03309 -4.60682 2.23322 2.90252 2.94677 3.00306 3.03075 3.73604 3.74290 3.88692 4.05937 4.55434 4.57904 4.62810 4.80726 5.10076 5.17622 5.37565 5.47594 5.55535 5.56751 5.68724 5.72519 5.85334 5.88235 5.99044 6.03721 6.17988 6.26341 6.32167 6.76567 6.82774 6.95688 7.06897 7.13165 7.43668 7.48691 7.65225 7.78854 7.85895 8.07059 8.26119 8.39810 8.63054 8.74976 9.10441 9.88885 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031666 B = 0.003161 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.014481 B = 8855.180497 C = 9475.615427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.146 4.146 4 O -0.558 6.558 5 C -0.158 4.158 6 C 0.125 3.875 7 N -0.744 5.744 8 C 0.570 3.430 9 O -0.575 6.575 10 C -0.283 4.283 11 C -0.064 4.064 12 C -0.177 4.177 13 C 0.128 3.872 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.238 4.238 23 C -0.023 4.023 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.375 0.625 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 2.418 -8.077 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.203 4.203 4 O -0.364 6.364 5 C -0.196 4.196 6 C 0.001 3.999 7 N -0.397 5.397 8 C 0.365 3.635 9 O -0.457 6.457 10 C -0.288 4.288 11 C -0.083 4.083 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.737 3.263 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.222 0.778 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.200 3.458 -8.564 13.760 hybrid contribution -0.640 -1.243 1.177 1.827 sum -10.840 2.216 -7.387 13.304 Atomic orbital electron populations 1.22490 0.95657 1.02467 1.02860 1.21127 0.92372 0.93195 0.84349 1.21856 1.02801 0.93305 1.02306 1.86581 1.77279 1.28846 1.43725 1.22504 0.96382 1.01554 0.99162 1.21195 0.92249 0.97696 0.88740 1.45942 1.08285 1.58666 1.26841 1.18590 0.80913 0.78617 0.85402 1.90637 1.55609 1.48370 1.51098 1.18929 0.94459 1.15651 0.99725 1.20469 0.96144 0.96976 0.94686 1.20973 0.96401 1.04924 0.97352 1.17795 0.91770 0.86893 0.91020 1.19874 1.00013 1.29979 0.97254 0.89694 1.26093 0.93890 0.95037 0.99673 1.69749 1.11139 1.30815 1.28014 0.86168 0.80114 0.80502 0.79541 1.18077 1.19682 1.19417 1.20736 0.98440 1.07318 0.99269 1.20373 0.93562 0.95097 0.95150 0.91473 0.91740 0.92300 0.91049 0.91978 0.91079 0.77761 0.91034 0.90385 0.91806 0.91554 0.76965 0.89383 0.86211 0.90336 0.88354 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.82 37.16 0.33 -0.98 16 2 C 0.13 1.23 1.09 -90.61 -0.10 1.13 16 3 C -0.15 -1.42 8.36 37.16 0.31 -1.11 16 4 O -0.56 -5.82 12.51 -35.23 -0.44 -6.26 16 5 C -0.16 -1.60 4.60 -26.73 -0.12 -1.73 16 6 C 0.13 1.80 5.08 -4.05 -0.02 1.78 16 7 N -0.74 -12.62 5.50 -61.32 -0.34 -12.96 16 8 C 0.57 12.42 7.76 -12.42 -0.10 12.33 16 9 O -0.58 -14.14 16.32 5.29 0.09 -14.05 16 10 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 12 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 13 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 14 C -0.44 -11.04 9.05 -37.74 -0.34 -11.38 16 15 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 16 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 17 N -0.77 -18.48 10.95 55.56 0.61 -17.87 16 18 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.38 2.61 9.05 45.56 0.41 3.02 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 34 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 35 H 0.40 5.90 6.47 -40.82 -0.26 5.63 16 36 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 37 H 0.12 2.96 6.18 -52.48 -0.32 2.63 16 38 H 0.29 6.10 8.29 -40.82 -0.34 5.77 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -29.76 332.38 -7.83 -37.59 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.91 Total: 12.73 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.82 Total: -16.38 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.27 Total: -30.83 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.35 Total: -20.31 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.76 -7.83 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274980671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.354 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds