Wall clock time and date at job start Mon Mar 30 2020 01:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32997 * 120.00544 * 2 1 4 4 C 1.50698 * 120.00174 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47349 * 54.96213 * 4 3 2 6 6 C 1.47101 * 119.99695 * 0.02562 * 3 2 1 7 7 O 1.21616 * 120.00028 * 54.61408 * 6 3 2 8 8 N 1.34777 * 120.00209 * 234.61378 * 6 3 2 9 9 C 1.46502 * 119.99477 * 7.76852 * 8 6 3 10 10 C 1.50694 * 109.47390 * 75.88448 * 9 8 6 11 11 H 1.08007 * 119.99963 * 356.09503 * 10 9 8 12 12 C 1.37872 * 120.00234 * 176.09954 * 10 9 8 13 13 N 1.31515 * 120.00385 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00164 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47053 * 89.99679 * 14 12 10 16 16 H 1.48491 * 109.47338 * 210.00444 * 14 12 10 17 17 H 1.48505 * 109.46680 * 330.00283 * 14 12 10 18 18 C 1.46496 * 120.00088 * 187.76850 * 8 6 3 19 19 C 1.50698 * 109.47087 * 85.15123 * 18 8 6 20 20 C 1.34518 * 125.78510 * 94.98020 * 19 18 8 21 21 C 1.41393 * 106.83665 * 179.97438 * 20 19 18 22 22 C 1.34509 * 106.84093 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.79236 * 274.67175 * 19 18 8 24 24 H 1.09001 * 109.46874 * 59.99322 * 1 2 3 25 25 H 1.09006 * 109.46743 * 300.00208 * 1 2 3 26 26 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99948 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46956 * 174.96205 * 4 3 2 29 29 H 1.09002 * 109.47276 * 294.95796 * 4 3 2 30 30 H 1.08999 * 109.46966 * 31.61224 * 5 4 3 31 31 H 1.08994 * 109.47382 * 151.61232 * 5 4 3 32 32 H 1.08995 * 109.47228 * 271.61262 * 5 4 3 33 33 H 1.09000 * 109.46825 * 195.88105 * 9 8 6 34 34 H 1.09005 * 109.47277 * 315.87775 * 9 8 6 35 35 H 0.96998 * 120.00497 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47150 * 205.15247 * 18 8 6 37 37 H 1.08998 * 109.47055 * 325.15189 * 18 8 6 38 38 H 1.08001 * 126.58342 * 0.03197 * 20 19 18 39 39 H 1.07996 * 126.58050 * 179.97438 * 21 20 19 40 40 H 1.08001 * 125.79310 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1516 -0.0006 5 6 4.1886 0.3237 -1.1820 6 6 1.4366 2.4257 0.0006 7 8 0.6047 2.6472 0.8596 8 7 1.6847 3.3475 -0.9509 9 6 2.5577 3.0177 -2.0802 10 6 1.8111 2.1425 -3.0535 11 1 0.8107 1.8081 -2.8215 12 6 2.4051 1.7684 -4.2401 13 7 1.7538 1.0041 -5.0894 14 14 4.1353 2.3471 -4.6417 15 1 5.1191 1.3615 -4.1260 16 1 4.2859 2.4732 -6.1136 17 1 4.3761 3.6667 -4.0046 18 6 1.0813 4.6790 -0.8558 19 6 1.9419 5.5595 0.0132 20 6 2.8911 6.4075 -0.4220 21 6 3.4440 7.0259 0.7230 22 6 2.7991 6.5193 1.7892 23 8 1.8872 5.6351 1.3530 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0470 -0.9353 0.0004 28 1 4.0424 2.1754 -0.0907 29 1 4.0427 0.7178 0.9309 30 1 3.4843 0.4009 -2.0103 31 1 5.1619 0.7001 -1.4965 32 1 4.2825 -0.7196 -0.8809 33 1 2.8670 3.9355 -2.5803 34 1 3.4381 2.4879 -1.7163 35 1 2.1718 0.7406 -5.9240 36 1 1.0045 5.1151 -1.8518 37 1 0.0867 4.5968 -0.4175 38 1 3.1757 6.5830 -1.4489 39 1 4.2327 7.7635 0.7386 40 1 2.9810 6.7819 2.8209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276567029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:46 Heat of formation + Delta-G solvation = -3.809429 kcal Electronic energy + Delta-G solvation = -22593.770792 eV Core-core repulsion = 19375.987261 eV Total energy + Delta-G solvation = -3217.783531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28604 -39.43447 -35.35725 -35.32697 -32.81644 -32.53602 -31.30752 -30.46801 -27.93079 -26.92855 -25.21046 -22.79500 -22.42582 -21.45936 -21.06080 -19.97896 -17.52560 -17.18922 -16.90136 -16.10231 -15.62524 -15.19944 -14.80511 -14.27771 -14.18149 -14.08506 -13.60057 -12.84079 -12.62478 -12.59539 -12.53102 -12.45303 -12.26669 -12.02530 -11.79710 -11.58083 -11.42702 -11.24856 -10.92518 -10.84726 -10.57178 -10.35506 -10.23446 -9.71938 -9.63636 -9.07130 -8.71703 -8.28483 -8.25625 -7.85991 -6.21142 -4.20945 1.90883 2.32990 2.80363 3.15680 3.23380 3.24096 3.26030 3.59028 4.03863 4.25683 4.95080 5.09339 5.14994 5.23213 5.31055 5.36712 5.57123 5.69026 5.79025 5.89465 5.94974 5.99089 5.99530 6.13992 6.22821 6.31473 6.32349 6.35550 6.39056 6.50668 6.58428 6.70968 6.75698 7.00376 7.02697 7.19113 7.30034 7.41671 7.45108 8.11234 8.37727 8.82864 8.91653 9.37901 10.91378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.008013 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.395780 B = 3493.434456 C = 4477.689746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.160 4.160 6 C 0.570 3.430 7 O -0.558 6.558 8 N -0.587 5.587 9 C 0.198 3.802 10 C -0.529 4.529 11 H 0.078 0.922 12 C 0.080 3.920 13 N -0.890 5.890 14 Si 0.860 3.140 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.264 1.264 18 C 0.193 3.807 19 C -0.013 4.013 20 C -0.208 4.208 21 C -0.217 4.217 22 C -0.050 4.050 23 O -0.164 6.164 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 5.305 9.045 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.217 4.217 6 C 0.360 3.640 7 O -0.438 6.438 8 N -0.317 5.317 9 C 0.078 3.922 10 C -0.567 4.567 11 H 0.096 0.904 12 C -0.123 4.123 13 N -0.528 5.528 14 Si 0.686 3.314 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.189 1.189 18 C 0.069 3.931 19 C -0.065 4.065 20 C -0.228 4.228 21 C -0.236 4.236 22 C -0.119 4.119 23 O -0.059 6.059 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.670 5.156 9.451 11.374 hybrid contribution 1.359 0.467 -0.657 1.580 sum 5.029 5.623 8.794 11.587 Atomic orbital electron populations 1.20916 0.92946 1.01567 1.03122 1.23033 0.96180 0.96410 0.95947 1.21144 0.95684 0.93011 1.05437 1.20427 0.90887 1.01003 0.98707 1.22057 1.01775 0.98508 0.99400 1.18423 0.81471 0.83752 0.80374 1.90697 1.34551 1.79628 1.38945 1.47979 1.49028 1.10185 1.24547 1.20149 0.90736 0.97072 0.84274 1.21298 1.03360 1.30406 1.01637 0.90373 1.24790 0.97190 0.94552 0.95813 1.69878 1.37497 1.35432 1.09967 0.87119 0.85853 0.80195 0.78188 1.19473 1.21037 1.18864 1.19756 0.94792 0.81491 0.97059 1.23282 1.01486 1.00820 0.80961 1.21640 0.99805 1.01177 1.00197 1.21772 1.04378 1.05089 0.92401 1.23992 0.93321 0.94709 0.99832 1.84131 1.48845 1.50545 1.22369 0.91185 0.90604 0.92693 0.86598 0.91580 0.91701 0.88994 0.93304 0.93334 0.94891 0.93933 0.92429 0.87014 0.88948 0.83557 0.83848 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.99 36.00 0.32 -1.98 16 2 C -0.10 -1.75 9.52 -36.13 -0.34 -2.09 16 3 C -0.15 -2.92 4.09 -102.85 -0.42 -3.34 16 4 C -0.07 -1.25 5.25 -27.89 -0.15 -1.40 16 5 C -0.16 -2.77 8.43 37.16 0.31 -2.45 16 6 C 0.57 12.20 6.13 -12.66 -0.08 12.12 16 7 O -0.56 -12.87 15.11 5.26 0.08 -12.79 16 8 N -0.59 -12.16 2.51 -177.84 -0.45 -12.60 16 9 C 0.20 4.32 3.89 -5.20 -0.02 4.30 16 10 C -0.53 -13.41 8.38 -34.44 -0.29 -13.70 16 11 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 12 C 0.08 2.09 5.29 -17.82 -0.09 1.99 16 13 N -0.89 -25.15 13.96 55.43 0.77 -24.38 16 14 Si 0.86 19.37 27.55 -169.99 -4.68 14.68 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.26 -5.66 6.43 56.52 0.36 -5.30 16 18 C 0.19 3.50 5.91 -5.20 -0.03 3.47 16 19 C -0.01 -0.23 6.87 -35.62 -0.24 -0.48 16 20 C -0.21 -3.24 10.81 -39.70 -0.43 -3.67 16 21 C -0.22 -2.96 10.91 -39.70 -0.43 -3.39 16 22 C -0.05 -0.69 12.09 29.41 0.36 -0.33 16 23 O -0.16 -2.88 10.65 5.70 0.06 -2.82 16 24 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 25 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.12 1.82 7.85 -52.49 -0.41 1.41 16 28 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.90 6.13 -51.93 -0.32 1.59 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.71 6.70 -51.93 -0.35 0.36 16 34 H 0.04 0.91 3.07 -51.93 -0.16 0.75 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.11 1.83 7.98 -51.93 -0.41 1.42 16 37 H 0.09 1.70 7.47 -51.93 -0.39 1.31 16 38 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 39 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -30.17 331.10 -6.49 -36.66 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.73 Total: 7.22 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.54 Total: -10.96 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.33 Total: -36.98 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.14 Total: -15.61 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.68 Total: 14.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.17 -6.49 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276567029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.849 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds