Wall clock time and date at job start Mon Mar 30 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32997 * 120.00544 * 2 1 4 4 C 1.50698 * 120.00174 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47349 * 54.96213 * 4 3 2 6 6 C 1.47101 * 119.99695 * 0.02562 * 3 2 1 7 7 O 1.21616 * 120.00028 * 54.61408 * 6 3 2 8 8 N 1.34777 * 120.00209 * 234.61378 * 6 3 2 9 9 C 1.46502 * 119.99477 * 7.76852 * 8 6 3 10 10 C 1.50694 * 109.47390 * 75.88448 * 9 8 6 11 11 H 1.08007 * 119.99963 * 356.09503 * 10 9 8 12 12 C 1.37872 * 120.00234 * 176.09954 * 10 9 8 13 13 N 1.31515 * 120.00385 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00164 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47053 * 89.99679 * 14 12 10 16 16 H 1.48491 * 109.47338 * 210.00444 * 14 12 10 17 17 H 1.48505 * 109.46680 * 330.00283 * 14 12 10 18 18 C 1.46496 * 120.00088 * 187.76850 * 8 6 3 19 19 C 1.50698 * 109.47087 * 85.15123 * 18 8 6 20 20 C 1.34518 * 125.78510 * 94.98020 * 19 18 8 21 21 C 1.41393 * 106.83665 * 179.97438 * 20 19 18 22 22 C 1.34509 * 106.84093 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.79236 * 274.67175 * 19 18 8 24 24 H 1.09001 * 109.46874 * 59.99322 * 1 2 3 25 25 H 1.09006 * 109.46743 * 300.00208 * 1 2 3 26 26 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99948 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46956 * 174.96205 * 4 3 2 29 29 H 1.09002 * 109.47276 * 294.95796 * 4 3 2 30 30 H 1.08999 * 109.46966 * 31.61224 * 5 4 3 31 31 H 1.08994 * 109.47382 * 151.61232 * 5 4 3 32 32 H 1.08995 * 109.47228 * 271.61262 * 5 4 3 33 33 H 1.09000 * 109.46825 * 195.88105 * 9 8 6 34 34 H 1.09005 * 109.47277 * 315.87775 * 9 8 6 35 35 H 0.96998 * 120.00497 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47150 * 205.15247 * 18 8 6 37 37 H 1.08998 * 109.47055 * 325.15189 * 18 8 6 38 38 H 1.08001 * 126.58342 * 0.03197 * 20 19 18 39 39 H 1.07996 * 126.58050 * 179.97438 * 21 20 19 40 40 H 1.08001 * 125.79310 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1516 -0.0006 5 6 4.1886 0.3237 -1.1820 6 6 1.4366 2.4257 0.0006 7 8 0.6047 2.6472 0.8596 8 7 1.6847 3.3475 -0.9509 9 6 2.5577 3.0177 -2.0802 10 6 1.8111 2.1425 -3.0535 11 1 0.8107 1.8081 -2.8215 12 6 2.4051 1.7684 -4.2401 13 7 1.7538 1.0041 -5.0894 14 14 4.1353 2.3471 -4.6417 15 1 5.1191 1.3615 -4.1260 16 1 4.2859 2.4732 -6.1136 17 1 4.3761 3.6667 -4.0046 18 6 1.0813 4.6790 -0.8558 19 6 1.9419 5.5595 0.0132 20 6 2.8911 6.4075 -0.4220 21 6 3.4440 7.0259 0.7230 22 6 2.7991 6.5193 1.7892 23 8 1.8872 5.6351 1.3530 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0470 -0.9353 0.0004 28 1 4.0424 2.1754 -0.0907 29 1 4.0427 0.7178 0.9309 30 1 3.4843 0.4009 -2.0103 31 1 5.1619 0.7001 -1.4965 32 1 4.2825 -0.7196 -0.8809 33 1 2.8670 3.9355 -2.5803 34 1 3.4381 2.4879 -1.7163 35 1 2.1718 0.7406 -5.9240 36 1 1.0045 5.1151 -1.8518 37 1 0.0867 4.5968 -0.4175 38 1 3.1757 6.5830 -1.4489 39 1 4.2327 7.7635 0.7386 40 1 2.9810 6.7819 2.8209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276567029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:45 Heat of formation + Delta-G solvation = -21.042712 kcal Electronic energy + Delta-G solvation = -22594.518083 eV Core-core repulsion = 19375.987261 eV Total energy + Delta-G solvation = -3218.530822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.47505 -41.04639 -37.02749 -36.80687 -34.60829 -33.88113 -32.73402 -31.86824 -29.71360 -28.32717 -26.64171 -24.62725 -23.81941 -22.61785 -22.52347 -21.26513 -19.11531 -19.02647 -18.28255 -17.61486 -17.06335 -16.70268 -16.30126 -15.93691 -15.65391 -15.48483 -15.06534 -14.60817 -14.16510 -14.06697 -13.86277 -13.69947 -13.61798 -13.41740 -13.30895 -13.18369 -12.90878 -12.73983 -12.57060 -12.47603 -12.07713 -11.92618 -11.79992 -11.63552 -10.86617 -10.76571 -10.62260 -9.76101 -9.60683 -9.39787 -8.23861 -6.28327 0.65718 0.88049 1.39949 1.42061 1.49343 1.67937 1.88129 2.18458 2.36677 2.52385 3.10536 3.62769 3.84194 3.93846 4.09056 4.15645 4.29832 4.34093 4.41226 4.51521 4.52660 4.60015 4.66090 4.76783 4.89057 4.90609 4.91800 5.01495 5.05184 5.13808 5.18313 5.20489 5.47236 5.50661 5.58296 5.62422 5.64954 5.81701 6.23282 6.27138 6.54867 6.75030 7.22700 7.36419 8.92268 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.008013 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.395780 B = 3493.434456 C = 4477.689746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C -0.172 4.172 4 C -0.067 4.067 5 C -0.157 4.157 6 C 0.561 3.439 7 O -0.585 6.585 8 N -0.591 5.591 9 C 0.209 3.791 10 C -0.519 4.519 11 H 0.029 0.971 12 C 0.031 3.969 13 N -0.940 5.940 14 Si 0.918 3.082 15 H -0.253 1.253 16 H -0.290 1.290 17 H -0.241 1.241 18 C 0.190 3.810 19 C -0.046 4.046 20 C -0.202 4.202 21 C -0.220 4.220 22 C -0.046 4.046 23 O -0.194 6.194 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 6.167 10.147 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.117 4.117 3 C -0.175 4.175 4 C -0.105 4.105 5 C -0.214 4.214 6 C 0.352 3.648 7 O -0.467 6.467 8 N -0.321 5.321 9 C 0.088 3.912 10 C -0.558 4.558 11 H 0.047 0.953 12 C -0.168 4.168 13 N -0.580 5.580 14 Si 0.741 3.259 15 H -0.177 1.177 16 H -0.216 1.216 17 H -0.165 1.165 18 C 0.067 3.933 19 C -0.097 4.097 20 C -0.222 4.222 21 C -0.239 4.239 22 C -0.113 4.113 23 O -0.090 6.090 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.176 0.824 39 H 0.193 0.807 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.633 6.043 10.565 13.862 hybrid contribution 0.328 0.224 -0.937 1.018 sum 6.962 6.268 9.629 13.433 Atomic orbital electron populations 1.20859 0.93425 1.02809 1.01002 1.23379 0.96165 0.97370 0.94738 1.21416 0.97212 0.92349 1.06480 1.20442 0.88983 1.00936 1.00091 1.21995 1.01158 1.00200 0.98011 1.18879 0.81311 0.84517 0.80086 1.90665 1.35795 1.80273 1.39987 1.48040 1.48830 1.11209 1.23979 1.19974 0.90715 0.96690 0.83864 1.21300 1.01484 1.30488 1.02529 0.95254 1.25535 1.01357 0.94450 0.95435 1.70034 1.39749 1.37486 1.10717 0.86168 0.80875 0.81101 0.77709 1.17728 1.21598 1.16471 1.19792 0.94485 0.80915 0.98131 1.22990 1.03049 1.02439 0.81211 1.21937 0.98694 1.00117 1.01489 1.22149 1.04962 1.05457 0.91314 1.24886 0.91626 0.92979 1.01814 1.84103 1.50377 1.51988 1.22509 0.94559 0.91442 0.89741 0.83640 0.92230 0.88865 0.92726 0.92084 0.90992 0.93873 0.92555 0.92469 0.85882 0.90384 0.82404 0.80672 0.74769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.99 71.23 0.64 -3.91 16 2 C -0.10 -3.49 9.52 24.52 0.23 -3.26 16 3 C -0.17 -6.62 4.09 -18.70 -0.08 -6.70 16 4 C -0.07 -2.16 5.25 29.85 0.16 -2.01 16 5 C -0.16 -5.00 8.43 71.98 0.61 -4.39 16 6 C 0.56 24.55 6.13 86.57 0.53 25.08 16 7 O -0.58 -27.94 15.11 -4.08 -0.06 -28.00 16 8 N -0.59 -24.88 2.51 -834.80 -2.10 -26.98 16 9 C 0.21 9.01 3.89 85.63 0.33 9.34 16 10 C -0.52 -27.02 8.38 25.60 0.21 -26.80 16 11 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 12 C 0.03 1.64 5.29 84.65 0.45 2.09 16 13 N -0.94 -54.59 13.96 21.45 0.30 -54.29 16 14 Si 0.92 38.90 27.55 68.60 1.89 40.79 16 15 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.24 -9.28 6.43 99.48 0.64 -8.64 16 18 C 0.19 7.08 5.91 85.63 0.51 7.59 16 19 C -0.05 -1.57 6.87 24.83 0.17 -1.40 16 20 C -0.20 -5.89 10.81 22.19 0.24 -5.65 16 21 C -0.22 -5.28 10.91 22.19 0.24 -5.04 16 22 C -0.05 -1.13 12.09 66.97 0.81 -0.32 16 23 O -0.19 -6.67 10.65 -2.51 -0.03 -6.70 16 24 H 0.04 1.55 8.09 -2.39 -0.02 1.53 16 25 H 0.07 2.56 7.04 -2.38 -0.02 2.54 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.15 4.26 7.85 -2.91 -0.02 4.24 16 28 H 0.06 1.98 6.70 -2.39 -0.02 1.96 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 2.18 6.13 -2.39 -0.01 2.17 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.79 6.70 -2.39 -0.02 1.77 16 34 H 0.06 2.32 3.07 -2.38 -0.01 2.31 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.12 4.13 7.98 -2.39 -0.02 4.11 16 37 H 0.08 3.06 7.47 -2.39 -0.02 3.04 16 38 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.24 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -67.92 331.10 6.02 -61.90 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.96 Total: 28.66 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.05 Total: -15.38 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -1.80 Total: -81.27 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.09 Total: -34.70 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.89 Total: 40.79 kcal Total: -67.92 6.02 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276567029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.861 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds