Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00004 * 2 1 4 4 C 1.53000 * 109.47266 * 59.99728 * 3 2 1 5 5 C 1.53001 * 109.47024 * 300.00158 * 3 2 1 6 6 C 1.52995 * 109.47465 * 179.97438 * 3 2 1 7 7 C 1.50705 * 109.46967 * 57.23735 * 6 3 2 8 8 O 1.21289 * 119.99678 * 354.08825 * 7 6 3 9 9 N 1.34776 * 120.00174 * 174.09281 * 7 6 3 10 10 C 1.37136 * 120.00118 * 3.35483 * 9 7 6 11 11 H 1.08000 * 119.99765 * 305.64870 * 10 9 7 12 12 C 1.38887 * 120.00254 * 125.64422 * 10 9 7 13 13 N 1.31420 * 120.00103 * 181.69030 * 12 10 9 14 14 Si 1.86800 * 119.99652 * 1.68567 * 12 10 9 15 15 H 1.48501 * 109.47195 * 95.22137 * 14 12 10 16 16 H 1.48505 * 109.47339 * 215.21828 * 14 12 10 17 17 H 1.48495 * 109.47546 * 335.21905 * 14 12 10 18 18 C 1.39789 * 120.00010 * 183.35401 * 9 7 6 19 19 C 1.38961 * 120.07926 * 172.02465 * 18 9 7 20 20 C 1.38074 * 119.92281 * 179.97438 * 19 18 9 21 21 C 1.38309 * 120.08207 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.15146 * 359.97438 * 21 20 19 23 23 C 1.38085 * 120.07920 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47254 * 299.99949 * 1 2 3 25 25 H 1.09003 * 109.47225 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47526 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47298 * 300.00222 * 4 3 2 29 29 H 1.09008 * 109.47005 * 60.00112 * 4 3 2 30 30 H 1.09002 * 109.47065 * 306.37699 * 5 3 2 31 31 H 1.08998 * 109.47671 * 66.38097 * 5 3 2 32 32 H 1.09005 * 109.47333 * 186.38254 * 5 3 2 33 33 H 1.08996 * 109.47115 * 297.23616 * 6 3 2 34 34 H 1.08998 * 109.47433 * 177.23022 * 6 3 2 35 35 H 0.96999 * 119.99750 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.03464 * 359.71114 * 19 18 9 37 37 H 1.08003 * 119.96341 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.92733 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.96160 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9760 0.3783 -1.1939 8 8 3.1493 -0.1470 -1.9092 9 7 5.2885 0.2409 -1.4672 10 6 6.2250 0.7765 -0.6206 11 1 6.1814 1.8237 -0.3602 12 6 7.2295 -0.0278 -0.0979 13 7 8.1072 0.4778 0.7394 14 14 7.3327 -1.8282 -0.5852 15 1 8.2895 -1.9824 -1.7104 16 1 7.7998 -2.6290 0.5749 17 1 5.9912 -2.3045 -1.0074 18 6 5.6954 -0.4476 -2.6137 19 6 7.0340 -0.4498 -2.9866 20 6 7.4323 -1.1314 -4.1194 21 6 6.5008 -1.8111 -4.8830 22 6 5.1676 -1.8111 -4.5149 23 6 4.7621 -1.1316 -3.3833 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0017 3.0607 1.2490 28 1 0.4721 2.1508 1.2492 29 1 1.8804 1.5238 2.1393 30 1 1.7796 1.4699 -2.1356 31 1 0.4860 2.2500 -1.1940 32 1 2.0890 3.0152 -1.3083 33 1 3.8601 0.6874 0.9146 34 1 3.9787 2.1793 -0.0490 35 1 8.8089 -0.0839 1.1041 36 1 7.7613 0.0847 -2.3934 37 1 8.4725 -1.1331 -4.4101 38 1 6.8150 -2.3430 -5.7688 39 1 4.4428 -2.3432 -5.1132 40 1 3.7208 -1.1317 -3.0966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278256631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = -29.967851 kcal Electronic energy + Delta-G solvation = -22733.505566 eV Core-core repulsion = 19514.587721 eV Total energy + Delta-G solvation = -3218.917845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16693 -38.64459 -37.16074 -35.03260 -33.00779 -32.15847 -30.08122 -29.57056 -27.64528 -27.11375 -26.10201 -25.12246 -22.08470 -21.39607 -19.85140 -19.15552 -18.01772 -16.45727 -16.07424 -15.70207 -15.37461 -14.93764 -14.85129 -14.50627 -13.88497 -13.63119 -13.36072 -13.09769 -12.89129 -12.77978 -12.49204 -12.25704 -12.12912 -11.87193 -11.78989 -11.34565 -11.32932 -11.16251 -10.93190 -10.82109 -10.59934 -10.26483 -10.12928 -10.04095 -9.31958 -9.18651 -8.94528 -8.20947 -7.98354 -7.00384 -6.51727 -4.47063 2.10477 2.21205 3.19414 3.28779 3.40110 3.65087 4.11040 4.16375 4.20325 4.63838 4.90485 5.05018 5.21195 5.33091 5.53730 5.62491 5.64866 5.67445 5.72983 5.80107 5.90207 5.92638 5.93948 6.03410 6.13620 6.22970 6.29504 6.34508 6.44683 6.46080 6.62712 6.72599 6.88333 7.21834 7.31446 7.36809 7.42031 7.66681 7.78384 8.02307 8.23188 8.83530 9.15075 9.45707 10.49938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.007479 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.335314 B = 3742.993402 C = 4668.925619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.125 3.875 4 C -0.177 4.177 5 C -0.181 4.181 6 C -0.105 4.105 7 C 0.505 3.495 8 O -0.538 6.538 9 N -0.415 5.415 10 C -0.366 4.366 11 H 0.108 0.892 12 C 0.082 3.918 13 N -0.861 5.861 14 Si 0.874 3.126 15 H -0.255 1.255 16 H -0.292 1.292 17 H -0.257 1.257 18 C 0.164 3.836 19 C -0.166 4.166 20 C -0.104 4.104 21 C -0.176 4.176 22 C -0.109 4.109 23 C -0.187 4.187 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.278 0.722 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 1.041 -2.220 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.085 3.915 4 C -0.234 4.234 5 C -0.238 4.238 6 C -0.145 4.145 7 C 0.297 3.703 8 O -0.420 6.420 9 N -0.124 5.124 10 C -0.492 4.492 11 H 0.125 0.875 12 C -0.128 4.128 13 N -0.494 5.494 14 Si 0.700 3.300 15 H -0.180 1.180 16 H -0.220 1.220 17 H -0.181 1.181 18 C 0.067 3.933 19 C -0.186 4.186 20 C -0.123 4.123 21 C -0.195 4.195 22 C -0.127 4.127 23 C -0.206 4.206 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.883 0.668 -2.345 9.212 hybrid contribution 0.389 -0.590 -0.064 0.710 sum -8.494 0.078 -2.409 8.830 Atomic orbital electron populations 1.22664 0.82920 1.01871 0.99289 1.88127 1.18120 1.26619 1.94745 1.21255 0.92873 0.83613 0.93770 1.22423 1.01297 1.01101 0.98604 1.22518 1.00372 1.00749 1.00177 1.21478 0.92133 1.01938 0.98913 1.20735 0.81731 0.81676 0.86115 1.90195 1.52748 1.48764 1.50280 1.41524 1.05852 1.47078 1.17995 1.18979 1.09053 0.96754 1.24417 0.87462 1.25485 0.95111 0.98857 0.93330 1.69650 1.14812 1.37427 1.27505 0.86963 0.80974 0.83890 0.78161 1.17996 1.21959 1.18080 1.18506 0.93206 0.93899 0.87729 1.21013 0.95680 1.03141 0.98792 1.20795 0.98675 0.97865 0.94981 1.20884 0.93850 1.03821 1.00944 1.21016 0.95315 0.99255 0.97162 1.22818 1.03655 0.98608 0.95563 0.94697 0.94257 0.90472 0.91449 0.92430 0.91686 0.89605 0.93187 0.92288 0.88012 0.88003 0.91141 0.84488 0.87031 0.87513 0.87118 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.21 101.05 1.03 1.43 16 2 O -0.36 -6.38 8.91 -55.86 -0.50 -6.88 16 3 C 0.12 2.01 0.71 -90.62 -0.06 1.95 16 4 C -0.18 -2.28 8.25 37.16 0.31 -1.97 16 5 C -0.18 -2.74 7.68 37.16 0.29 -2.45 16 6 C -0.11 -1.97 3.81 -27.88 -0.11 -2.08 16 7 C 0.51 11.34 7.11 -10.98 -0.08 11.27 16 8 O -0.54 -12.38 9.60 -15.08 -0.14 -12.52 16 9 N -0.41 -10.06 2.31 -58.98 -0.14 -10.20 16 10 C -0.37 -9.29 8.02 -14.94 -0.12 -9.41 16 11 H 0.11 2.79 7.67 -52.49 -0.40 2.39 16 12 C 0.08 2.14 4.61 -17.49 -0.08 2.06 16 13 N -0.86 -23.20 13.96 55.49 0.77 -22.43 16 14 Si 0.87 21.47 23.80 -169.99 -4.05 17.42 16 15 H -0.26 -6.04 6.10 56.52 0.34 -5.69 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.26 -6.71 6.46 56.52 0.36 -6.35 16 18 C 0.16 3.91 4.13 -83.69 -0.35 3.57 16 19 C -0.17 -3.80 5.53 -39.37 -0.22 -4.02 16 20 C -0.10 -2.09 9.74 -39.62 -0.39 -2.48 16 21 C -0.18 -3.27 10.04 -39.53 -0.40 -3.67 16 22 C -0.11 -2.12 10.04 -39.61 -0.40 -2.52 16 23 C -0.19 -4.21 9.03 -39.37 -0.36 -4.56 16 24 H 0.03 0.40 6.42 -51.93 -0.33 0.07 16 25 H 0.04 0.50 6.56 -51.93 -0.34 0.16 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 29 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.09 1.53 6.13 -51.93 -0.32 1.21 16 31 H 0.05 0.65 6.90 -51.93 -0.36 0.29 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 34 H 0.10 1.78 7.70 -51.93 -0.40 1.38 16 35 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.14 3.30 5.65 -52.48 -0.30 3.00 16 37 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.18 4.17 4.57 -56.05 -0.26 3.91 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -28.82 308.50 -5.98 -34.80 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.66 Total: 8.04 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.93 Total: -12.88 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.64 Total: -32.62 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.64 Total: -19.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.05 Total: 17.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.82 -5.98 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278256631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.836 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds