Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00004 * 2 1 4 4 C 1.53000 * 109.47266 * 59.99728 * 3 2 1 5 5 C 1.53001 * 109.47024 * 300.00158 * 3 2 1 6 6 C 1.52995 * 109.47465 * 179.97438 * 3 2 1 7 7 C 1.50705 * 109.46967 * 57.23735 * 6 3 2 8 8 O 1.21289 * 119.99678 * 354.08825 * 7 6 3 9 9 N 1.34776 * 120.00174 * 174.09281 * 7 6 3 10 10 C 1.37136 * 120.00118 * 3.35483 * 9 7 6 11 11 H 1.08000 * 119.99765 * 305.64870 * 10 9 7 12 12 C 1.38887 * 120.00254 * 125.64422 * 10 9 7 13 13 N 1.31420 * 120.00103 * 181.69030 * 12 10 9 14 14 Si 1.86800 * 119.99652 * 1.68567 * 12 10 9 15 15 H 1.48501 * 109.47195 * 95.22137 * 14 12 10 16 16 H 1.48505 * 109.47339 * 215.21828 * 14 12 10 17 17 H 1.48495 * 109.47546 * 335.21905 * 14 12 10 18 18 C 1.39789 * 120.00010 * 183.35401 * 9 7 6 19 19 C 1.38961 * 120.07926 * 172.02465 * 18 9 7 20 20 C 1.38074 * 119.92281 * 179.97438 * 19 18 9 21 21 C 1.38309 * 120.08207 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.15146 * 359.97438 * 21 20 19 23 23 C 1.38085 * 120.07920 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47254 * 299.99949 * 1 2 3 25 25 H 1.09003 * 109.47225 * 60.00175 * 1 2 3 26 26 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47526 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47298 * 300.00222 * 4 3 2 29 29 H 1.09008 * 109.47005 * 60.00112 * 4 3 2 30 30 H 1.09002 * 109.47065 * 306.37699 * 5 3 2 31 31 H 1.08998 * 109.47671 * 66.38097 * 5 3 2 32 32 H 1.09005 * 109.47333 * 186.38254 * 5 3 2 33 33 H 1.08996 * 109.47115 * 297.23616 * 6 3 2 34 34 H 1.08998 * 109.47433 * 177.23022 * 6 3 2 35 35 H 0.96999 * 119.99750 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.03464 * 359.71114 * 19 18 9 37 37 H 1.08003 * 119.96341 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.92733 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.96160 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9760 0.3783 -1.1939 8 8 3.1493 -0.1470 -1.9092 9 7 5.2885 0.2409 -1.4672 10 6 6.2250 0.7765 -0.6206 11 1 6.1814 1.8237 -0.3602 12 6 7.2295 -0.0278 -0.0979 13 7 8.1072 0.4778 0.7394 14 14 7.3327 -1.8282 -0.5852 15 1 8.2895 -1.9824 -1.7104 16 1 7.7998 -2.6290 0.5749 17 1 5.9912 -2.3045 -1.0074 18 6 5.6954 -0.4476 -2.6137 19 6 7.0340 -0.4498 -2.9866 20 6 7.4323 -1.1314 -4.1194 21 6 6.5008 -1.8111 -4.8830 22 6 5.1676 -1.8111 -4.5149 23 6 4.7621 -1.1316 -3.3833 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0017 3.0607 1.2490 28 1 0.4721 2.1508 1.2492 29 1 1.8804 1.5238 2.1393 30 1 1.7796 1.4699 -2.1356 31 1 0.4860 2.2500 -1.1940 32 1 2.0890 3.0152 -1.3083 33 1 3.8601 0.6874 0.9146 34 1 3.9787 2.1793 -0.0490 35 1 8.8089 -0.0839 1.1041 36 1 7.7613 0.0847 -2.3934 37 1 8.4725 -1.1331 -4.4101 38 1 6.8150 -2.3430 -5.7688 39 1 4.4428 -2.3432 -5.1132 40 1 3.7208 -1.1317 -3.0966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278256631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -46.457072 kcal Electronic energy + Delta-G solvation = -22734.220592 eV Core-core repulsion = 19514.587721 eV Total energy + Delta-G solvation = -3219.632871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85665 -40.02720 -38.71355 -36.83714 -34.32107 -34.11587 -31.71894 -31.14552 -29.03965 -28.23254 -27.40605 -26.93923 -23.70832 -23.04034 -21.37057 -20.75964 -19.74678 -18.09526 -17.70225 -17.29701 -16.96617 -16.45871 -16.16628 -15.91905 -15.68306 -15.15296 -14.99747 -14.66335 -14.50747 -14.24309 -14.15243 -13.83515 -13.52023 -13.16932 -13.16048 -12.89773 -12.67317 -12.58478 -12.47478 -12.32819 -12.12384 -12.05984 -11.83578 -11.39066 -11.20882 -10.82102 -10.39202 -9.89544 -9.64329 -8.82120 -8.49439 -6.48093 0.46097 0.55725 1.23368 1.29290 1.40387 1.92111 2.14289 2.51524 2.74648 2.97800 3.12596 3.79302 3.88173 4.09664 4.14869 4.19280 4.34977 4.48377 4.52648 4.61309 4.66570 4.68858 4.71593 4.74858 4.80079 4.84476 4.91378 4.93634 4.96892 5.13603 5.22996 5.26166 5.49034 5.53514 5.61333 5.68580 5.75176 6.02100 6.05133 6.43682 6.51098 6.86957 7.29196 7.63437 8.50689 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.007479 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.335314 B = 3742.993402 C = 4668.925619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.123 3.877 4 C -0.170 4.170 5 C -0.175 4.175 6 C -0.104 4.104 7 C 0.495 3.505 8 O -0.546 6.546 9 N -0.431 5.431 10 C -0.354 4.354 11 H 0.093 0.907 12 C 0.055 3.945 13 N -0.891 5.891 14 Si 0.917 3.083 15 H -0.240 1.240 16 H -0.294 1.294 17 H -0.282 1.282 18 C 0.135 3.865 19 C -0.188 4.188 20 C -0.105 4.105 21 C -0.162 4.162 22 C -0.104 4.104 23 C -0.208 4.208 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.282 0.718 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 0.526 -3.520 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C 0.084 3.916 4 C -0.227 4.227 5 C -0.232 4.232 6 C -0.143 4.143 7 C 0.289 3.711 8 O -0.428 6.428 9 N -0.142 5.142 10 C -0.481 4.481 11 H 0.110 0.890 12 C -0.151 4.151 13 N -0.526 5.526 14 Si 0.744 3.256 15 H -0.164 1.164 16 H -0.222 1.222 17 H -0.208 1.208 18 C 0.038 3.962 19 C -0.209 4.209 20 C -0.124 4.124 21 C -0.181 4.181 22 C -0.123 4.123 23 C -0.228 4.228 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.617 0.155 -3.660 10.291 hybrid contribution 0.541 -0.452 0.208 0.734 sum -9.077 -0.297 -3.452 9.715 Atomic orbital electron populations 1.22856 0.80807 1.02878 1.00632 1.88064 1.20577 1.27726 1.95087 1.21308 0.90774 0.83728 0.95803 1.22359 1.02736 1.01102 0.96489 1.22434 1.02116 1.00350 0.98288 1.21553 0.94781 1.01399 0.96562 1.21348 0.81174 0.81708 0.86917 1.90188 1.52706 1.49066 1.50804 1.41669 1.06204 1.47858 1.18490 1.18833 1.09025 0.96069 1.24129 0.88968 1.25830 0.95169 1.00713 0.93437 1.69689 1.15748 1.38340 1.28823 0.86312 0.79657 0.81499 0.78102 1.16381 1.22164 1.20792 1.18791 0.94138 0.94923 0.88306 1.21019 0.94928 1.04641 1.00299 1.21218 1.00674 0.96710 0.93769 1.21364 0.92903 1.02336 1.01534 1.21430 0.96827 0.98023 0.96006 1.22831 1.02995 0.99900 0.97060 0.92387 0.93692 0.89827 0.90082 0.90236 0.92020 0.92726 0.90680 0.91348 0.89218 0.87250 0.90776 0.86419 0.84094 0.83020 0.83736 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.21 113.37 1.16 1.77 16 2 O -0.39 -13.98 8.91 -129.25 -1.15 -15.13 16 3 C 0.12 3.91 0.71 -10.79 -0.01 3.90 16 4 C -0.17 -4.03 8.25 71.98 0.59 -3.44 16 5 C -0.17 -5.12 7.68 71.98 0.55 -4.57 16 6 C -0.10 -3.98 3.81 29.85 0.11 -3.87 16 7 C 0.50 22.96 7.11 87.66 0.62 23.58 16 8 O -0.55 -25.83 9.60 16.67 0.16 -25.67 16 9 N -0.43 -21.55 2.31 -458.89 -1.06 -22.61 16 10 C -0.35 -18.57 8.02 84.02 0.67 -17.90 16 11 H 0.09 5.01 7.67 -2.91 -0.02 4.99 16 12 C 0.06 2.94 4.61 84.91 0.39 3.34 16 13 N -0.89 -48.99 13.96 21.65 0.30 -48.69 16 14 Si 0.92 45.07 23.80 68.60 1.63 46.70 16 15 H -0.24 -11.01 6.10 99.48 0.61 -10.41 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.28 -15.00 6.46 99.48 0.64 -14.35 16 18 C 0.13 6.51 4.13 38.22 0.16 6.67 16 19 C -0.19 -8.56 5.53 22.40 0.12 -8.44 16 20 C -0.11 -3.94 9.74 22.25 0.22 -3.72 16 21 C -0.16 -5.40 10.04 22.30 0.22 -5.18 16 22 C -0.10 -3.80 10.04 22.25 0.22 -3.57 16 23 C -0.21 -9.33 9.03 22.41 0.20 -9.12 16 24 H 0.06 1.18 6.42 -2.39 -0.02 1.17 16 25 H 0.04 1.07 6.56 -2.39 -0.02 1.05 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.54 6.54 -2.38 -0.02 1.52 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.05 1.95 6.13 -2.39 -0.01 1.94 16 31 H 0.07 1.78 6.90 -2.39 -0.02 1.77 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.11 3.93 7.70 -2.39 -0.02 3.91 16 35 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.12 5.75 5.65 -2.91 -0.02 5.74 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.17 7.86 4.57 -59.29 -0.27 7.58 16 Total: -1.00 -63.75 308.50 5.74 -58.01 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.61 Total: 27.93 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.25 Total: -20.55 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -0.76 Total: -71.30 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.99 Total: -40.80 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.63 Total: 46.70 kcal Total: -63.75 5.74 -58.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278256631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.552 kcal (2) G-P(sol) polarization free energy of solvation -63.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds