Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46731 * 55.00163 * 4 3 2 6 6 N 1.46496 * 109.47017 * 295.00322 * 4 3 2 7 7 C 1.34773 * 120.00226 * 85.00086 * 6 4 3 8 8 O 1.21689 * 120.00303 * 359.97438 * 7 6 4 9 9 C 1.46377 * 120.00061 * 179.97438 * 7 6 4 10 10 H 1.07991 * 119.99955 * 359.97438 * 9 7 6 11 11 C 1.40050 * 119.99928 * 179.97438 * 9 7 6 12 12 N 1.30676 * 120.00070 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99991 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47213 * 90.00257 * 13 11 9 15 15 H 1.48500 * 109.47286 * 210.00065 * 13 11 9 16 16 H 1.48497 * 109.46932 * 330.00123 * 13 11 9 17 17 C 1.52997 * 109.47242 * 174.99869 * 4 3 2 18 18 H 1.09002 * 109.47153 * 175.00232 * 17 4 3 19 19 O 1.42896 * 109.46906 * 55.00515 * 17 4 3 20 20 C 1.50701 * 109.47212 * 295.00231 * 17 4 3 21 21 C 1.38237 * 119.99605 * 84.72864 * 20 17 4 22 22 C 1.38236 * 119.99544 * 179.81222 * 21 20 17 23 23 C 1.38237 * 120.00196 * 0.39148 * 22 21 20 24 24 C 1.38230 * 119.99861 * 359.86039 * 23 22 21 25 25 C 1.38229 * 120.00169 * 265.00276 * 20 17 4 26 26 H 1.09001 * 109.47080 * 299.99846 * 1 2 3 27 27 H 1.08997 * 109.47495 * 60.00177 * 1 2 3 28 28 H 1.09002 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47225 * 240.00214 * 2 1 3 30 30 H 1.09002 * 109.46829 * 120.00068 * 2 1 3 31 31 H 1.09001 * 109.47061 * 60.00142 * 3 2 1 32 32 H 1.08997 * 109.46835 * 300.00228 * 3 2 1 33 33 H 0.96996 * 120.00110 * 264.99221 * 6 4 3 34 34 H 0.97003 * 119.99865 * 179.97438 * 12 11 9 35 35 H 0.96708 * 114.00101 * 299.99268 * 19 17 4 36 36 H 1.08002 * 120.00277 * 359.97438 * 21 20 17 37 37 H 1.08001 * 119.99795 * 180.23017 * 22 21 20 38 38 H 1.08002 * 120.00265 * 179.83609 * 23 22 21 39 39 H 1.08000 * 120.00485 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99905 * 359.97433 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0578 0.8590 1.2527 7 6 4.1865 -0.4776 1.3680 8 8 3.8972 -1.1998 0.4324 9 6 4.6745 -1.0606 2.6189 10 1 4.9317 -0.4197 3.4491 11 6 4.8077 -2.4496 2.7389 12 7 4.4969 -3.2251 1.7341 13 14 5.4297 -3.1937 4.3354 14 1 4.2794 -3.4763 5.2311 15 1 6.1522 -4.4579 4.0440 16 1 6.3519 -2.2385 5.0005 17 6 4.0800 2.8795 -0.1251 18 1 5.1663 2.8887 -0.0356 19 8 3.5099 3.6798 0.9124 20 6 3.6819 3.4383 -1.4669 21 6 2.4313 4.0022 -1.6372 22 6 2.0675 4.5182 -2.8669 23 6 2.9512 4.4631 -3.9285 24 6 4.1998 3.8946 -3.7595 25 6 4.5650 3.3819 -2.5287 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 4.2882 1.4346 1.9986 34 1 4.5896 -4.1871 1.8171 35 1 2.5437 3.7174 0.8942 36 1 1.7394 4.0419 -0.8088 37 1 1.0918 4.9621 -2.9990 38 1 2.6660 4.8639 -4.8900 39 1 4.8902 3.8511 -4.5889 40 1 5.5406 2.9378 -2.3967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280736797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = -78.780767 kcal Electronic energy + Delta-G solvation = -21972.391342 eV Core-core repulsion = 18751.356810 eV Total energy + Delta-G solvation = -3221.034532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95947 -38.01202 -36.45991 -34.24577 -32.57653 -32.14756 -31.42554 -30.88561 -28.48342 -26.04790 -25.88056 -22.61504 -22.44046 -20.89169 -20.31138 -19.26846 -17.56238 -17.25810 -15.89818 -15.58156 -15.45015 -15.08731 -14.90992 -14.25727 -14.05121 -13.65592 -13.50840 -13.33008 -12.92298 -12.76540 -12.42313 -12.26413 -11.80271 -11.56680 -11.45505 -11.15692 -11.07457 -11.00580 -10.81128 -10.49809 -10.44821 -10.36770 -10.16888 -9.85421 -9.65675 -8.90253 -8.82894 -8.70047 -7.56470 -7.39137 -6.16071 -4.60889 1.32044 1.38652 3.15250 3.22558 3.25760 3.73651 4.12209 4.53135 4.58164 4.65007 4.84003 4.94661 5.04376 5.15786 5.21237 5.35090 5.47299 5.57764 5.67630 5.79718 5.83242 5.92101 5.96838 5.98208 6.03757 6.19302 6.30736 6.41622 6.46679 6.47612 6.53167 6.62614 6.77151 6.96855 7.02123 7.38311 7.46043 7.70284 7.98875 8.15607 8.37023 9.05589 9.58985 10.62532 10.82051 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004611 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.713917 B = 6071.058658 C = 6405.746886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.132 3.868 5 H 0.083 0.917 6 N -0.757 5.757 7 C 0.556 3.444 8 O -0.573 6.573 9 C -0.546 4.546 10 H 0.066 0.934 11 C 0.089 3.911 12 N -0.768 5.768 13 Si 0.904 3.096 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.138 3.862 18 H 0.110 0.890 19 O -0.553 6.553 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.109 4.109 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.383 0.617 34 H 0.267 0.733 35 H 0.370 0.630 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 13.531 -6.787 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.025 3.975 5 H 0.101 0.899 6 N -0.412 5.412 7 C 0.360 3.640 8 O -0.456 6.456 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.130 4.130 12 N -0.396 5.396 13 Si 0.729 3.271 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.078 3.922 18 H 0.128 0.872 19 O -0.359 6.359 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.216 0.784 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.727 12.866 -7.398 15.302 hybrid contribution -0.201 -0.217 0.889 0.937 sum -3.928 12.649 -6.509 14.758 Atomic orbital electron populations 1.21814 0.97844 1.00821 1.00115 1.21516 0.93078 0.95695 1.04783 1.22121 0.96282 0.98519 1.00171 1.21099 0.93289 0.91556 0.91531 0.89924 1.46127 1.72966 1.08426 1.13677 1.18137 0.77769 0.78979 0.89068 1.90607 1.54353 1.59320 1.41329 1.20896 1.46840 0.91809 0.98747 0.91605 1.25664 0.93344 0.97179 0.96822 1.70018 1.35436 1.04413 1.29776 0.86428 0.79356 0.78768 0.82531 1.19825 1.20550 1.18962 1.21237 0.98692 0.89487 0.82759 0.87244 1.86583 1.25289 1.71718 1.52313 1.20549 0.94628 0.98481 0.96576 1.20894 0.95756 0.98490 0.97558 1.21082 0.99535 1.00078 0.93143 1.21120 0.94275 1.00209 0.98753 1.21121 0.96689 0.98692 0.97208 1.21040 0.99679 0.99281 0.92706 0.93687 0.94022 0.93310 0.91955 0.89667 0.92850 0.92383 0.78444 0.92243 0.78100 0.86170 0.86183 0.86329 0.86106 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.11 -2.27 4.53 -26.73 -0.12 -2.39 16 3 C -0.13 -2.22 3.83 -26.73 -0.10 -2.32 16 4 C 0.13 2.43 2.12 -67.93 -0.14 2.28 16 5 H 0.08 1.76 7.58 -51.92 -0.39 1.37 16 6 N -0.76 -16.39 5.01 -55.22 -0.28 -16.66 16 7 C 0.56 15.13 6.31 -12.99 -0.08 15.05 16 8 O -0.57 -17.34 12.15 5.20 0.06 -17.28 16 9 C -0.55 -15.19 9.54 -35.63 -0.34 -15.53 16 10 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 11 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 12 N -0.77 -22.61 11.83 55.55 0.66 -21.95 16 13 Si 0.90 20.13 29.56 -169.99 -5.02 15.11 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 C 0.14 2.06 3.16 -27.88 -0.09 1.98 16 18 H 0.11 1.68 8.05 -51.93 -0.42 1.26 16 19 O -0.55 -7.93 12.77 -35.23 -0.45 -8.38 16 20 C -0.10 -1.37 4.74 -104.62 -0.50 -1.87 16 21 C -0.11 -1.31 7.34 -39.58 -0.29 -1.60 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.11 -1.40 9.68 -39.58 -0.38 -1.78 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.39 7.84 -51.93 -0.41 0.98 16 30 H 0.08 2.09 5.64 -51.93 -0.29 1.80 16 31 H 0.05 0.83 7.00 -51.93 -0.36 0.47 16 32 H 0.06 0.86 5.52 -51.93 -0.29 0.58 16 33 H 0.38 7.75 8.36 -40.82 -0.34 7.41 16 34 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 35 H 0.37 4.38 5.67 45.56 0.26 4.63 16 36 H 0.12 1.25 6.09 -52.49 -0.32 0.93 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -32.49 323.99 -8.19 -40.68 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -5.07 Total: 14.64 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.97 Total: -11.04 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.38 Total: -38.61 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.39 Total: -25.66 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.49 -8.19 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.101 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds