Wall clock time and date at job start Mon Mar 30 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46731 * 55.00163 * 4 3 2 6 6 N 1.46496 * 109.47017 * 295.00322 * 4 3 2 7 7 C 1.34773 * 120.00226 * 85.00086 * 6 4 3 8 8 O 1.21689 * 120.00303 * 359.97438 * 7 6 4 9 9 C 1.46377 * 120.00061 * 179.97438 * 7 6 4 10 10 H 1.07991 * 119.99955 * 359.97438 * 9 7 6 11 11 C 1.40050 * 119.99928 * 179.97438 * 9 7 6 12 12 N 1.30676 * 120.00070 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99991 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47213 * 90.00257 * 13 11 9 15 15 H 1.48500 * 109.47286 * 210.00065 * 13 11 9 16 16 H 1.48497 * 109.46932 * 330.00123 * 13 11 9 17 17 C 1.52997 * 109.47242 * 174.99869 * 4 3 2 18 18 H 1.09002 * 109.47153 * 175.00232 * 17 4 3 19 19 O 1.42896 * 109.46906 * 55.00515 * 17 4 3 20 20 C 1.50701 * 109.47212 * 295.00231 * 17 4 3 21 21 C 1.38237 * 119.99605 * 84.72864 * 20 17 4 22 22 C 1.38236 * 119.99544 * 179.81222 * 21 20 17 23 23 C 1.38237 * 120.00196 * 0.39148 * 22 21 20 24 24 C 1.38230 * 119.99861 * 359.86039 * 23 22 21 25 25 C 1.38229 * 120.00169 * 265.00276 * 20 17 4 26 26 H 1.09001 * 109.47080 * 299.99846 * 1 2 3 27 27 H 1.08997 * 109.47495 * 60.00177 * 1 2 3 28 28 H 1.09002 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47225 * 240.00214 * 2 1 3 30 30 H 1.09002 * 109.46829 * 120.00068 * 2 1 3 31 31 H 1.09001 * 109.47061 * 60.00142 * 3 2 1 32 32 H 1.08997 * 109.46835 * 300.00228 * 3 2 1 33 33 H 0.96996 * 120.00110 * 264.99221 * 6 4 3 34 34 H 0.97003 * 119.99865 * 179.97438 * 12 11 9 35 35 H 0.96708 * 114.00101 * 299.99268 * 19 17 4 36 36 H 1.08002 * 120.00277 * 359.97438 * 21 20 17 37 37 H 1.08001 * 119.99795 * 180.23017 * 22 21 20 38 38 H 1.08002 * 120.00265 * 179.83609 * 23 22 21 39 39 H 1.08000 * 120.00485 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99905 * 359.97433 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0578 0.8590 1.2527 7 6 4.1865 -0.4776 1.3680 8 8 3.8972 -1.1998 0.4324 9 6 4.6745 -1.0606 2.6189 10 1 4.9317 -0.4197 3.4491 11 6 4.8077 -2.4496 2.7389 12 7 4.4969 -3.2251 1.7341 13 14 5.4297 -3.1937 4.3354 14 1 4.2794 -3.4763 5.2311 15 1 6.1522 -4.4579 4.0440 16 1 6.3519 -2.2385 5.0005 17 6 4.0800 2.8795 -0.1251 18 1 5.1663 2.8887 -0.0356 19 8 3.5099 3.6798 0.9124 20 6 3.6819 3.4383 -1.4669 21 6 2.4313 4.0022 -1.6372 22 6 2.0675 4.5182 -2.8669 23 6 2.9512 4.4631 -3.9285 24 6 4.1998 3.8946 -3.7595 25 6 4.5650 3.3819 -2.5287 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 4.2882 1.4346 1.9986 34 1 4.5896 -4.1871 1.8171 35 1 2.5437 3.7174 0.8942 36 1 1.7394 4.0419 -0.8088 37 1 1.0918 4.9621 -2.9990 38 1 2.6660 4.8639 -4.8900 39 1 4.8902 3.8511 -4.5889 40 1 5.5406 2.9378 -2.3967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280736797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:19 Heat of formation + Delta-G solvation = -101.745562 kcal Electronic energy + Delta-G solvation = -21973.387170 eV Core-core repulsion = 18751.356810 eV Total energy + Delta-G solvation = -3222.030360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12350 -39.51459 -37.95735 -35.82451 -34.55974 -33.92065 -32.58109 -31.76885 -30.03036 -27.95586 -27.19019 -23.79927 -23.53539 -22.19882 -21.85668 -21.01495 -19.17759 -18.61457 -17.46931 -17.01315 -16.78094 -16.52553 -16.18918 -15.67138 -15.60139 -15.00917 -14.81368 -14.46135 -14.24079 -14.17004 -13.98581 -13.73011 -13.18352 -13.08645 -12.82775 -12.71884 -12.60035 -12.53746 -12.31305 -12.04306 -11.94653 -11.90994 -11.66455 -11.40729 -11.01009 -10.87745 -9.80026 -9.73757 -9.68516 -9.24883 -8.24309 -6.79754 0.40274 0.50678 1.39566 1.40581 1.55109 2.25374 2.53430 2.79365 3.13450 3.46371 3.67604 3.73585 3.87475 3.93463 4.14349 4.16924 4.19245 4.30125 4.37968 4.51968 4.55968 4.65017 4.72552 4.81858 4.88469 5.03176 5.03845 5.07736 5.16139 5.33570 5.35239 5.42291 5.56259 5.62386 5.66526 5.68970 5.95284 6.11029 6.28674 6.36650 6.68148 6.91987 7.63314 8.56632 8.74769 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004611 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.713917 B = 6071.058658 C = 6405.746886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.120 4.120 4 C 0.133 3.867 5 H 0.045 0.955 6 N -0.746 5.746 7 C 0.546 3.454 8 O -0.613 6.613 9 C -0.577 4.577 10 H 0.079 0.921 11 C 0.034 3.966 12 N -0.819 5.819 13 Si 0.990 3.010 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.252 1.252 17 C 0.156 3.844 18 H 0.099 0.901 19 O -0.555 6.555 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.130 4.130 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.383 0.617 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 15.657 -6.481 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.158 4.158 4 C 0.027 3.973 5 H 0.063 0.937 6 N -0.400 5.400 7 C 0.349 3.651 8 O -0.499 6.499 9 C -0.614 4.614 10 H 0.097 0.903 11 C -0.181 4.181 12 N -0.449 5.449 13 Si 0.810 3.190 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.176 1.176 17 C 0.096 3.904 18 H 0.117 0.883 19 O -0.363 6.363 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.148 4.148 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.865 15.053 -7.090 17.336 hybrid contribution 0.129 -0.798 0.690 1.063 sum -4.736 14.255 -6.399 16.328 Atomic orbital electron populations 1.21734 0.94591 1.01109 1.02293 1.21352 0.95925 0.96879 1.00530 1.22016 0.94677 0.96719 1.02396 1.21213 0.94608 0.93074 0.88413 0.93691 1.45815 1.72074 1.06978 1.15173 1.18355 0.77432 0.80554 0.88717 1.90572 1.55916 1.60907 1.42508 1.21418 1.47513 0.92974 0.99510 0.90284 1.26817 0.92877 0.97432 1.00979 1.70181 1.36957 1.04974 1.32768 0.85132 0.79005 0.77847 0.77012 1.18777 1.19879 1.17579 1.20854 0.98059 0.87184 0.84295 0.88291 1.86569 1.26544 1.71105 1.52100 1.20421 0.95961 1.00222 0.95589 1.21144 0.95229 0.98247 0.98872 1.21467 1.00746 0.99256 0.92479 1.21533 0.93637 0.99047 1.00034 1.21409 0.97708 0.98277 0.97015 1.21202 0.99840 1.00148 0.93645 0.91944 0.91228 0.94117 0.95506 0.94769 0.90780 0.89586 0.77454 0.91848 0.76614 0.84472 0.83343 0.83535 0.84242 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.11 -4.51 4.53 30.60 0.14 -4.37 16 3 C -0.12 -3.95 3.83 30.59 0.12 -3.83 16 4 C 0.13 5.03 2.12 44.99 0.10 5.12 16 5 H 0.04 2.05 7.58 -2.38 -0.02 2.03 16 6 N -0.75 -33.47 5.01 -446.83 -2.24 -35.70 16 7 C 0.55 31.16 6.31 86.36 0.55 31.70 16 8 O -0.61 -39.51 12.15 -4.31 -0.05 -39.56 16 9 C -0.58 -33.03 9.54 24.83 0.24 -32.79 16 10 H 0.08 4.15 7.85 -2.92 -0.02 4.12 16 11 C 0.03 1.91 5.50 85.30 0.47 2.38 16 12 N -0.82 -50.21 11.83 21.84 0.26 -49.96 16 13 Si 0.99 41.76 29.56 68.60 2.03 43.78 16 14 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 17 C 0.16 4.66 3.16 29.85 0.09 4.75 16 18 H 0.10 3.13 8.05 -2.39 -0.02 3.11 16 19 O -0.56 -15.05 12.77 -148.98 -1.90 -16.96 16 20 C -0.12 -3.16 4.74 -19.87 -0.09 -3.26 16 21 C -0.12 -2.50 7.34 22.27 0.16 -2.34 16 22 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.13 -3.32 9.68 22.27 0.22 -3.10 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 30 H 0.03 1.76 5.64 -2.39 -0.01 1.74 16 31 H 0.07 2.15 7.00 -2.39 -0.02 2.14 16 32 H 0.09 2.39 5.52 -2.39 -0.01 2.38 16 33 H 0.39 16.09 8.36 -92.71 -0.78 15.31 16 34 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 35 H 0.38 8.03 5.67 -74.05 -0.42 7.61 16 36 H 0.14 2.36 6.09 -2.91 -0.02 2.34 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -75.18 323.99 1.33 -73.85 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.13 Total: 40.43 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.37 Total: -15.89 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.98 Total: -85.66 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -1.96 Total: -56.52 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -75.18 1.33 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.895 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds