Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 7 7 C 1.34777 * 120.00376 * 85.00350 * 6 4 3 8 8 O 1.21693 * 119.99491 * 0.02562 * 7 6 4 9 9 C 1.46367 * 120.00622 * 179.97438 * 7 6 4 10 10 H 1.08004 * 119.99521 * 359.97438 * 9 7 6 11 11 C 1.40046 * 120.00201 * 179.97438 * 9 7 6 12 12 N 1.30674 * 120.00213 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99918 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47420 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47333 * 119.99823 * 13 11 9 16 16 H 1.48497 * 109.47158 * 239.99736 * 13 11 9 17 17 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 18 18 H 1.09002 * 109.46818 * 299.99696 * 17 4 3 19 19 O 1.42898 * 109.47241 * 59.99386 * 17 4 3 20 20 C 1.50703 * 109.47186 * 179.97438 * 17 4 3 21 21 C 1.38227 * 119.99881 * 279.72390 * 20 17 4 22 22 C 1.38235 * 119.99620 * 179.78726 * 21 20 17 23 23 C 1.38230 * 120.00308 * 0.44300 * 22 21 20 24 24 C 1.38234 * 120.00004 * 359.81202 * 23 22 21 25 25 C 1.38236 * 119.99972 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 33 33 H 0.97002 * 120.00091 * 264.99863 * 6 4 3 34 34 H 0.96998 * 119.99831 * 180.02562 * 12 11 9 35 35 H 0.96702 * 113.99841 * 60.00376 * 19 17 4 36 36 H 1.07996 * 120.00447 * 359.97438 * 21 20 17 37 37 H 1.08007 * 120.00180 * 180.27616 * 22 21 20 38 38 H 1.08006 * 120.00180 * 179.83184 * 23 22 21 39 39 H 1.08001 * 120.00378 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.00406 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 7 4.0587 0.8586 1.2509 7 6 4.1875 -0.4781 1.3660 8 8 3.8982 -1.1999 0.4300 9 6 4.6764 -1.0614 2.6162 10 1 4.9343 -0.4206 3.4465 11 6 4.8096 -2.4504 2.7359 12 7 4.4971 -3.2257 1.7315 13 14 5.4342 -3.1947 4.3313 14 1 5.7168 -2.1107 5.3061 15 1 4.4033 -4.1064 4.8892 16 1 6.6797 -3.9589 4.0667 17 6 4.0800 2.8795 -0.1263 18 1 3.7163 3.3139 -1.0576 19 8 3.6040 3.6521 0.9775 20 6 5.5870 2.8795 -0.1264 21 6 6.2781 2.7809 1.0667 22 6 7.6605 2.7765 1.0663 23 6 8.3516 2.8799 -0.1264 24 6 7.6605 2.9838 -1.3190 25 6 6.2781 2.9837 -1.3190 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 4.2898 1.4340 1.9969 34 1 4.5891 -4.1877 1.8145 35 1 3.8897 3.3225 1.8405 36 1 5.7382 2.7042 1.9988 37 1 8.2006 2.6949 1.9980 38 1 9.4317 2.8791 -0.1264 39 1 8.2005 3.0650 -2.2508 40 1 5.7381 3.0645 -2.2508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280736799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = -99.728784 kcal Electronic energy + Delta-G solvation = -22254.748559 eV Core-core repulsion = 19032.805653 eV Total energy + Delta-G solvation = -3221.942906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07517 -39.42087 -37.89697 -35.87806 -34.53694 -33.86697 -32.44400 -31.66765 -30.36354 -28.03178 -26.84923 -23.80110 -23.43955 -22.31494 -21.76554 -20.98987 -19.45559 -18.42709 -17.50339 -17.21946 -16.70074 -16.31885 -16.13583 -15.60982 -15.41473 -14.99617 -14.84250 -14.52898 -14.28638 -13.96312 -13.88735 -13.68786 -13.27462 -13.19053 -12.78373 -12.73919 -12.54472 -12.46641 -12.31135 -12.07551 -11.95411 -11.87263 -11.68472 -11.38006 -10.95564 -10.85280 -9.78998 -9.69273 -9.60193 -9.25610 -8.22908 -6.77045 0.45292 0.54650 1.38529 1.39482 1.55289 2.24824 2.56249 2.84336 3.09214 3.49711 3.62406 3.74326 3.93061 3.98205 4.16567 4.22563 4.28900 4.35476 4.41089 4.51356 4.60271 4.64995 4.80588 4.84000 4.90237 5.03877 5.11136 5.12774 5.17427 5.34055 5.36599 5.48249 5.57694 5.63738 5.67063 5.71871 5.95785 6.14348 6.27373 6.35233 6.62718 6.94164 7.62466 8.58747 8.78026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.007390 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.560219 B = 3787.807489 C = 5331.095413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.109 4.109 4 C 0.131 3.869 5 H 0.050 0.950 6 N -0.741 5.741 7 C 0.552 3.448 8 O -0.613 6.613 9 C -0.573 4.573 10 H 0.080 0.920 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.985 3.015 14 H -0.248 1.248 15 H -0.272 1.272 16 H -0.273 1.273 17 C 0.155 3.845 18 H 0.128 0.872 19 O -0.553 6.553 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.384 0.616 34 H 0.270 0.730 35 H 0.378 0.622 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 13.330 -1.407 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.147 4.147 4 C 0.025 3.975 5 H 0.068 0.932 6 N -0.397 5.397 7 C 0.355 3.645 8 O -0.498 6.498 9 C -0.610 4.610 10 H 0.099 0.901 11 C -0.181 4.181 12 N -0.449 5.449 13 Si 0.806 3.194 14 H -0.171 1.171 15 H -0.197 1.197 16 H -0.198 1.198 17 C 0.096 3.904 18 H 0.146 0.854 19 O -0.360 6.360 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.062 13.005 -2.648 13.431 hybrid contribution 0.676 -1.049 1.259 1.772 sum 2.738 11.956 -1.389 12.344 Atomic orbital electron populations 1.21730 0.94969 1.00966 1.02111 1.21401 0.95679 0.97035 1.00734 1.21831 0.94547 0.95860 1.02480 1.21303 0.94052 0.93210 0.88967 0.93212 1.45766 1.72156 1.06997 1.14790 1.18257 0.77199 0.80451 0.88558 1.90582 1.55803 1.60892 1.42550 1.21403 1.47240 0.92782 0.99536 0.90140 1.26782 0.92998 0.97645 1.00724 1.70186 1.37134 1.04883 1.32690 0.85147 0.78073 0.78662 0.77523 1.17085 1.19694 1.19782 1.21081 0.88321 0.89389 0.91645 0.85417 1.86549 1.76736 1.55527 1.17141 1.20603 0.96536 1.00718 0.94533 1.21032 0.95061 0.99404 0.97698 1.21404 0.94244 0.99849 0.99363 1.21474 1.01038 0.99802 0.92522 1.21428 0.94146 0.99988 0.99128 1.21260 0.95169 1.00352 0.97697 0.92392 0.91338 0.94043 0.95096 0.94634 0.90248 0.91328 0.78125 0.92007 0.77221 0.85987 0.84626 0.84021 0.83865 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.11 -4.58 4.53 30.59 0.14 -4.44 16 3 C -0.11 -3.70 4.67 30.59 0.14 -3.56 16 4 C 0.13 4.77 2.08 44.99 0.09 4.87 16 5 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 6 N -0.74 -30.80 4.13 -446.83 -1.85 -32.64 16 7 C 0.55 30.19 6.31 86.36 0.55 30.74 16 8 O -0.61 -38.58 12.15 -4.33 -0.05 -38.63 16 9 C -0.57 -31.52 9.54 24.83 0.24 -31.28 16 10 H 0.08 4.01 7.85 -2.91 -0.02 3.98 16 11 C 0.03 1.84 5.50 85.30 0.47 2.31 16 12 N -0.82 -49.57 11.83 21.84 0.26 -49.31 16 13 Si 0.99 40.99 29.56 68.60 2.03 43.01 16 14 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 C 0.16 4.42 3.09 29.85 0.09 4.51 16 18 H 0.13 3.15 8.01 -2.39 -0.02 3.13 16 19 O -0.55 -14.85 12.60 -148.98 -1.88 -16.73 16 20 C -0.12 -3.64 4.88 -19.87 -0.10 -3.74 16 21 C -0.11 -3.32 8.32 22.27 0.19 -3.14 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 24 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 25 C -0.13 -3.43 9.67 22.27 0.22 -3.22 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 30 H 0.03 1.81 5.65 -2.39 -0.01 1.79 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.24 7.84 -2.39 -0.02 2.22 16 33 H 0.38 13.79 5.45 -92.71 -0.51 13.29 16 34 H 0.27 14.96 8.29 -92.71 -0.77 14.19 16 35 H 0.38 8.93 6.11 -74.06 -0.45 8.48 16 36 H 0.12 3.26 5.50 -2.91 -0.02 3.24 16 37 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.14 3.08 8.04 -2.91 -0.02 3.05 16 Total: -1.00 -73.28 325.14 2.01 -71.27 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: 0.10 Total: 43.14 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.41 Total: -20.12 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.59 Total: -81.95 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -1.93 Total: -55.35 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -73.28 2.01 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.461 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds