Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47337 * 2 1 4 4 C 1.52999 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47213 * 304.99871 * 4 3 2 6 6 N 1.46502 * 109.47296 * 64.99955 * 4 3 2 7 7 C 1.34783 * 119.99871 * 275.00568 * 6 4 3 8 8 O 1.21688 * 119.99885 * 359.97438 * 7 6 4 9 9 C 1.46371 * 119.99958 * 179.97438 * 7 6 4 10 10 H 1.08005 * 119.99822 * 359.97438 * 9 7 6 11 11 C 1.40046 * 120.00277 * 179.97438 * 9 7 6 12 12 N 1.30674 * 119.99449 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00221 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47208 * 60.00015 * 13 11 9 15 15 H 1.48506 * 109.47059 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46861 * 299.99860 * 13 11 9 17 17 C 1.52995 * 109.47313 * 185.00165 * 4 3 2 18 18 H 1.09002 * 109.47366 * 184.99967 * 17 4 3 19 19 O 1.42897 * 109.47111 * 304.99717 * 17 4 3 20 20 C 1.50696 * 109.47341 * 65.00095 * 17 4 3 21 21 C 1.38230 * 120.00328 * 100.00049 * 20 17 4 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 17 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 119.99689 * 359.90912 * 24 23 22 26 26 H 1.09005 * 109.46905 * 59.99929 * 1 2 3 27 27 H 1.08995 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47156 * 300.00146 * 1 2 3 29 29 H 1.08998 * 109.47156 * 239.99854 * 2 1 3 30 30 H 1.09005 * 109.46905 * 120.00071 * 2 1 3 31 31 H 1.08998 * 109.47116 * 59.99830 * 3 2 1 32 32 H 1.09005 * 109.47181 * 299.99902 * 3 2 1 33 33 H 0.96997 * 119.99762 * 94.99754 * 6 4 3 34 34 H 0.97009 * 119.99640 * 180.02562 * 12 11 9 35 35 H 0.96706 * 113.99830 * 60.00182 * 19 17 4 36 36 H 1.08000 * 120.00376 * 0.02562 * 21 20 17 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.99852 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8428 6 7 4.0589 0.8585 -1.2509 7 6 4.1876 -0.4782 -1.3658 8 8 3.8981 -1.2000 -0.4298 9 6 4.6755 -1.0617 -2.6163 10 1 4.9321 -0.4211 -3.4472 11 6 4.8098 -2.4506 -2.7356 12 7 4.4999 -3.2256 -1.7302 13 14 5.4318 -3.1952 -4.3319 14 1 6.7928 -2.6771 -4.6225 15 1 5.4830 -4.6737 -4.2015 16 1 4.5147 -2.8270 -5.4402 17 6 4.0800 2.8794 0.1264 18 1 5.1664 2.8885 0.0378 19 8 3.5107 3.6794 -0.9118 20 6 3.6808 3.4386 1.4676 21 6 4.5978 3.4767 2.5013 22 6 4.2318 3.9901 3.7315 23 6 2.9489 4.4659 3.9278 24 6 2.0315 4.4269 2.8944 25 6 2.3977 3.9139 1.6641 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.2899 1.4339 -1.9968 34 1 4.5932 -4.1876 -1.8126 35 1 2.5446 3.7170 -0.8944 36 1 5.6006 3.1061 2.3476 37 1 4.9469 4.0158 4.5404 38 1 2.6627 4.8667 4.8890 39 1 1.0291 4.7983 3.0480 40 1 1.6812 3.8838 0.8567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280736800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -77.878741 kcal Electronic energy + Delta-G solvation = -21975.635181 eV Core-core repulsion = 18754.639763 eV Total energy + Delta-G solvation = -3220.995417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97156 -38.00754 -36.45518 -34.24650 -32.57696 -32.14254 -31.42741 -30.90747 -28.47078 -26.06612 -25.87720 -22.63422 -22.43695 -20.86989 -20.32703 -19.27037 -17.54278 -17.25555 -15.90559 -15.58590 -15.44342 -15.11987 -14.90195 -14.23155 -14.05865 -13.67110 -13.50544 -13.32939 -12.92428 -12.75985 -12.42343 -12.25755 -11.82072 -11.55944 -11.45210 -11.17768 -11.07166 -10.97399 -10.80595 -10.49865 -10.44195 -10.36736 -10.18986 -9.85261 -9.64014 -8.89698 -8.82124 -8.71027 -7.56456 -7.38960 -6.15757 -4.60769 1.31637 1.38412 3.17268 3.22282 3.24049 3.73264 4.12346 4.53952 4.58737 4.65854 4.83443 4.94518 5.04327 5.15490 5.20935 5.34296 5.47186 5.57689 5.67431 5.79474 5.83432 5.92205 5.96745 5.98159 6.03515 6.18871 6.30659 6.41166 6.46651 6.47372 6.53181 6.62880 6.77141 6.96677 7.02035 7.38276 7.46056 7.70625 7.98986 8.15715 8.36883 9.05622 9.59201 10.62803 10.82266 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.004619 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.954739 B = 6060.291390 C = 6417.094381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.134 4.134 4 C 0.132 3.868 5 H 0.083 0.917 6 N -0.757 5.757 7 C 0.557 3.443 8 O -0.573 6.573 9 C -0.546 4.546 10 H 0.065 0.935 11 C 0.090 3.910 12 N -0.768 5.768 13 Si 0.905 3.095 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.138 3.862 18 H 0.109 0.891 19 O -0.553 6.553 20 C -0.102 4.102 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.109 4.109 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.383 0.617 34 H 0.267 0.733 35 H 0.370 0.630 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 13.542 6.787 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.173 4.173 4 C 0.025 3.975 5 H 0.101 0.899 6 N -0.412 5.412 7 C 0.361 3.639 8 O -0.456 6.456 9 C -0.583 4.583 10 H 0.083 0.917 11 C -0.130 4.130 12 N -0.396 5.396 13 Si 0.730 3.270 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.078 3.922 18 H 0.127 0.873 19 O -0.359 6.359 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.215 0.785 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.759 12.872 7.401 15.316 hybrid contribution -0.185 -0.214 -0.893 0.937 sum -3.944 12.658 6.508 14.770 Atomic orbital electron populations 1.21814 0.97845 1.00827 1.00112 1.21515 0.93073 0.95698 1.04785 1.22178 0.96332 0.98566 1.00238 1.21094 0.93265 0.91590 0.91541 0.89930 1.46129 1.72937 1.08420 1.13713 1.18127 0.77775 0.78976 0.89047 1.90606 1.54369 1.59349 1.41292 1.20861 1.46931 0.91812 0.98730 0.91655 1.25660 0.93340 0.97169 0.96827 1.70008 1.35319 1.04488 1.29832 0.86486 0.79909 0.77966 0.82685 1.19357 1.20650 1.19350 1.21235 0.98702 0.89484 0.82742 0.87291 1.86583 1.25290 1.71746 1.52254 1.20544 0.94349 0.98699 0.96709 1.21046 0.99545 0.99120 0.92936 1.21122 0.96534 0.99007 0.97112 1.21124 0.93839 1.00445 0.98895 1.21088 0.99461 0.99993 0.93328 1.20939 0.95623 0.98605 0.97545 0.93687 0.93308 0.94020 0.89680 0.91949 0.92201 0.92831 0.78451 0.92185 0.78115 0.85826 0.86111 0.86325 0.86167 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.11 -2.27 4.53 -26.73 -0.12 -2.39 16 3 C -0.13 -2.25 3.70 -26.73 -0.10 -2.35 16 4 C 0.13 2.43 2.12 -67.93 -0.14 2.28 16 5 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 6 N -0.76 -16.40 5.01 -55.21 -0.28 -16.68 16 7 C 0.56 15.15 6.31 -12.99 -0.08 15.07 16 8 O -0.57 -17.36 12.15 5.20 0.06 -17.29 16 9 C -0.55 -15.21 9.54 -35.63 -0.34 -15.55 16 10 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 11 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 12 N -0.77 -22.62 11.83 55.55 0.66 -21.96 16 13 Si 0.90 20.14 29.56 -169.99 -5.02 15.12 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 17 C 0.14 2.07 3.18 -27.89 -0.09 1.98 16 18 H 0.11 1.67 8.00 -51.93 -0.42 1.26 16 19 O -0.55 -7.95 12.83 -35.23 -0.45 -8.40 16 20 C -0.10 -1.38 4.82 -104.63 -0.50 -1.88 16 21 C -0.11 -1.39 9.67 -39.59 -0.38 -1.77 16 22 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.11 -1.32 7.28 -39.58 -0.29 -1.60 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 2.09 5.65 -51.93 -0.29 1.80 16 30 H 0.06 1.39 7.84 -51.93 -0.41 0.98 16 31 H 0.06 0.88 5.17 -51.93 -0.27 0.61 16 32 H 0.05 0.83 7.00 -51.93 -0.36 0.47 16 33 H 0.38 7.75 8.36 -40.82 -0.34 7.41 16 34 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 35 H 0.37 4.39 5.78 45.56 0.26 4.65 16 36 H 0.12 1.46 8.04 -52.49 -0.42 1.04 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.28 5.80 -52.49 -0.30 0.98 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -32.51 323.36 -8.16 -40.67 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.97 Total: -11.06 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.38 Total: -38.64 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.39 Total: -25.69 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.51 -8.16 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.209 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds