Wall clock time and date at job start Mon Mar 30 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47337 * 2 1 4 4 C 1.52999 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47213 * 304.99871 * 4 3 2 6 6 N 1.46502 * 109.47296 * 64.99955 * 4 3 2 7 7 C 1.34783 * 119.99871 * 275.00568 * 6 4 3 8 8 O 1.21688 * 119.99885 * 359.97438 * 7 6 4 9 9 C 1.46371 * 119.99958 * 179.97438 * 7 6 4 10 10 H 1.08005 * 119.99822 * 359.97438 * 9 7 6 11 11 C 1.40046 * 120.00277 * 179.97438 * 9 7 6 12 12 N 1.30674 * 119.99449 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00221 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47208 * 60.00015 * 13 11 9 15 15 H 1.48506 * 109.47059 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46861 * 299.99860 * 13 11 9 17 17 C 1.52995 * 109.47313 * 185.00165 * 4 3 2 18 18 H 1.09002 * 109.47366 * 184.99967 * 17 4 3 19 19 O 1.42897 * 109.47111 * 304.99717 * 17 4 3 20 20 C 1.50696 * 109.47341 * 65.00095 * 17 4 3 21 21 C 1.38230 * 120.00328 * 100.00049 * 20 17 4 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 17 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 119.99689 * 359.90912 * 24 23 22 26 26 H 1.09005 * 109.46905 * 59.99929 * 1 2 3 27 27 H 1.08995 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47156 * 300.00146 * 1 2 3 29 29 H 1.08998 * 109.47156 * 239.99854 * 2 1 3 30 30 H 1.09005 * 109.46905 * 120.00071 * 2 1 3 31 31 H 1.08998 * 109.47116 * 59.99830 * 3 2 1 32 32 H 1.09005 * 109.47181 * 299.99902 * 3 2 1 33 33 H 0.96997 * 119.99762 * 94.99754 * 6 4 3 34 34 H 0.97009 * 119.99640 * 180.02562 * 12 11 9 35 35 H 0.96706 * 113.99830 * 60.00182 * 19 17 4 36 36 H 1.08000 * 120.00376 * 0.02562 * 21 20 17 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.99852 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8428 6 7 4.0589 0.8585 -1.2509 7 6 4.1876 -0.4782 -1.3658 8 8 3.8981 -1.2000 -0.4298 9 6 4.6755 -1.0617 -2.6163 10 1 4.9321 -0.4211 -3.4472 11 6 4.8098 -2.4506 -2.7356 12 7 4.4999 -3.2256 -1.7302 13 14 5.4318 -3.1952 -4.3319 14 1 6.7928 -2.6771 -4.6225 15 1 5.4830 -4.6737 -4.2015 16 1 4.5147 -2.8270 -5.4402 17 6 4.0800 2.8794 0.1264 18 1 5.1664 2.8885 0.0378 19 8 3.5107 3.6794 -0.9118 20 6 3.6808 3.4386 1.4676 21 6 4.5978 3.4767 2.5013 22 6 4.2318 3.9901 3.7315 23 6 2.9489 4.4659 3.9278 24 6 2.0315 4.4269 2.8944 25 6 2.3977 3.9139 1.6641 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.2899 1.4339 -1.9968 34 1 4.5932 -4.1876 -1.8126 35 1 2.5446 3.7170 -0.8944 36 1 5.6006 3.1061 2.3476 37 1 4.9469 4.0158 4.5404 38 1 2.6627 4.8667 4.8890 39 1 1.0291 4.7983 3.0480 40 1 1.6812 3.8838 0.8567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280736800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:25 Heat of formation + Delta-G solvation = -100.925075 kcal Electronic energy + Delta-G solvation = -21976.634545 eV Core-core repulsion = 18754.639763 eV Total energy + Delta-G solvation = -3221.994781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13554 -39.51006 -37.95498 -35.82169 -34.56063 -33.91799 -32.58187 -31.79251 -30.01694 -27.95213 -27.20459 -23.79846 -23.55668 -22.16463 -21.86998 -21.02287 -19.17757 -18.59702 -17.46595 -16.99978 -16.80132 -16.52972 -16.20710 -15.66592 -15.59787 -15.02399 -14.78452 -14.46988 -14.26482 -14.15778 -13.97983 -13.72236 -13.16949 -13.09446 -12.83338 -12.68710 -12.61718 -12.53373 -12.30535 -12.07280 -11.95653 -11.89979 -11.65907 -11.40212 -10.99088 -10.86444 -9.79945 -9.73827 -9.68867 -9.24923 -8.24071 -6.79722 0.39952 0.50498 1.39520 1.42569 1.53324 2.25480 2.53577 2.79029 3.13805 3.47725 3.67690 3.73645 3.87644 3.91915 4.14555 4.16726 4.19611 4.29830 4.37795 4.52432 4.56066 4.65039 4.72442 4.81932 4.88766 5.03039 5.03896 5.07887 5.16164 5.33792 5.35215 5.42467 5.56032 5.62213 5.66442 5.69133 5.95220 6.10931 6.28612 6.36669 6.68243 6.91940 7.63404 8.56695 8.74817 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.004619 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.954739 B = 6060.291390 C = 6417.094381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.122 4.122 4 C 0.133 3.867 5 H 0.044 0.956 6 N -0.747 5.747 7 C 0.546 3.454 8 O -0.613 6.613 9 C -0.578 4.578 10 H 0.079 0.921 11 C 0.034 3.966 12 N -0.819 5.819 13 Si 0.990 3.010 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.257 1.257 17 C 0.156 3.844 18 H 0.099 0.901 19 O -0.555 6.555 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.383 0.617 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 15.632 6.511 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.161 4.161 4 C 0.027 3.973 5 H 0.063 0.937 6 N -0.400 5.400 7 C 0.350 3.650 8 O -0.499 6.499 9 C -0.615 4.615 10 H 0.097 0.903 11 C -0.181 4.181 12 N -0.449 5.449 13 Si 0.810 3.190 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.181 1.181 17 C 0.096 3.904 18 H 0.117 0.883 19 O -0.363 6.363 20 C -0.123 4.123 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.868 15.024 7.121 17.325 hybrid contribution 0.139 -0.781 -0.703 1.060 sum -4.729 14.243 6.418 16.323 Atomic orbital electron populations 1.21734 0.94573 1.01112 1.02310 1.21351 0.95935 0.96885 1.00513 1.22081 0.94689 0.96770 1.02513 1.21210 0.94622 0.93090 0.88409 0.93732 1.45817 1.72050 1.06973 1.15209 1.18349 0.77439 0.80552 0.88702 1.90572 1.55933 1.60936 1.42476 1.21393 1.47594 0.92988 0.99513 0.90278 1.26815 0.92865 0.97422 1.00991 1.70176 1.36859 1.05008 1.32820 0.85189 0.79637 0.76989 0.77200 1.18133 1.19972 1.18073 1.20857 0.98076 0.87180 0.84278 0.88313 1.86568 1.26545 1.71142 1.52059 1.20421 0.95634 1.00446 0.95788 1.21220 0.99693 0.99987 0.93837 1.21416 0.97629 0.98480 0.96901 1.21539 0.93285 0.99277 1.00122 1.21470 1.00818 0.99067 0.92660 1.21175 0.95108 0.98509 0.98797 0.91945 0.94128 0.91183 0.94808 0.95512 0.89322 0.90764 0.77461 0.91843 0.76632 0.86149 0.84175 0.83527 0.83367 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.72 16 2 C -0.11 -4.51 4.53 30.59 0.14 -4.37 16 3 C -0.12 -4.02 3.70 30.59 0.11 -3.91 16 4 C 0.13 5.03 2.12 44.99 0.10 5.12 16 5 H 0.04 2.04 7.58 -2.38 -0.02 2.02 16 6 N -0.75 -33.51 5.01 -446.82 -2.24 -35.75 16 7 C 0.55 31.19 6.31 86.36 0.55 31.74 16 8 O -0.61 -39.55 12.15 -4.31 -0.05 -39.60 16 9 C -0.58 -33.09 9.54 24.83 0.24 -32.85 16 10 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 11 C 0.03 1.92 5.50 85.30 0.47 2.39 16 12 N -0.82 -50.24 11.83 21.84 0.26 -49.98 16 13 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 14 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 C 0.16 4.66 3.18 29.85 0.09 4.76 16 18 H 0.10 3.12 8.00 -2.39 -0.02 3.10 16 19 O -0.56 -15.12 12.83 -148.98 -1.91 -17.03 16 20 C -0.12 -3.19 4.82 -19.87 -0.10 -3.29 16 21 C -0.13 -3.26 9.67 22.27 0.22 -3.05 16 22 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 23 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.12 -2.54 7.28 22.27 0.16 -2.38 16 26 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 1.73 5.65 -2.39 -0.01 1.72 16 30 H 0.03 1.25 7.84 -2.38 -0.02 1.23 16 31 H 0.09 2.44 5.17 -2.39 -0.01 2.43 16 32 H 0.07 2.15 7.00 -2.38 -0.02 2.14 16 33 H 0.39 16.10 8.36 -92.71 -0.78 15.33 16 34 H 0.27 15.25 8.29 -92.70 -0.77 14.48 16 35 H 0.38 8.08 5.78 -74.05 -0.43 7.65 16 36 H 0.12 2.96 8.04 -2.91 -0.02 2.94 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.14 2.41 5.80 -2.91 -0.02 2.40 16 Total: -1.00 -75.28 323.36 1.30 -73.97 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.14 Total: 40.58 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 3.36 Total: -15.97 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.98 Total: -85.73 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -1.96 Total: -56.64 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -75.28 1.30 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.953 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds