Wall clock time and date at job start Mon Mar 30 2020 01:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 C 1.53001 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47096 * 304.99401 * 4 3 2 6 6 N 1.46492 * 109.47696 * 64.99745 * 4 3 2 7 7 C 1.34777 * 120.00306 * 275.00404 * 6 4 3 8 8 O 1.21689 * 119.99711 * 359.97438 * 7 6 4 9 9 C 1.46371 * 120.00461 * 179.97438 * 7 6 4 10 10 H 1.08001 * 119.99940 * 353.93308 * 9 7 6 11 11 C 1.40043 * 120.00436 * 173.93532 * 9 7 6 12 12 N 1.30674 * 119.99716 * 6.14717 * 11 9 7 13 13 Si 1.86800 * 120.00445 * 186.14768 * 11 9 7 14 14 H 1.48500 * 109.47202 * 94.98006 * 13 11 9 15 15 H 1.48505 * 109.47281 * 214.98365 * 13 11 9 16 16 H 1.48500 * 109.46772 * 334.98038 * 13 11 9 17 17 C 1.53002 * 109.46951 * 185.00154 * 4 3 2 18 18 H 1.08991 * 109.47500 * 64.99724 * 17 4 3 19 19 O 1.42903 * 109.47140 * 304.99199 * 17 4 3 20 20 C 1.50702 * 109.46916 * 184.99958 * 17 4 3 21 21 C 1.38235 * 120.00204 * 84.72533 * 20 17 4 22 22 C 1.38238 * 119.99969 * 179.80937 * 21 20 17 23 23 C 1.38239 * 119.99970 * 0.39561 * 22 21 20 24 24 C 1.38234 * 120.00140 * 359.85700 * 23 22 21 25 25 C 1.38241 * 119.99753 * 264.99468 * 20 17 4 26 26 H 1.08997 * 109.47382 * 300.00218 * 1 2 3 27 27 H 1.09001 * 109.46807 * 60.00253 * 1 2 3 28 28 H 1.08996 * 109.46993 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46807 * 119.99747 * 2 1 3 30 30 H 1.08997 * 109.47382 * 239.99782 * 2 1 3 31 31 H 1.09001 * 109.47157 * 299.99533 * 3 2 1 32 32 H 1.08997 * 109.47253 * 59.99703 * 3 2 1 33 33 H 0.97003 * 120.00447 * 94.99510 * 6 4 3 34 34 H 0.97007 * 119.99840 * 180.02562 * 12 11 9 35 35 H 0.96698 * 113.99938 * 300.00543 * 19 17 4 36 36 H 1.08002 * 120.00175 * 359.97438 * 21 20 17 37 37 H 1.07995 * 119.99777 * 180.22798 * 22 21 20 38 38 H 1.07996 * 119.99754 * 179.83381 * 23 22 21 39 39 H 1.07996 * 120.00387 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00190 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8533 0.8428 6 7 4.0589 0.8586 -1.2507 7 6 4.1877 -0.4781 -1.3656 8 8 3.8982 -1.1999 -0.4297 9 6 4.6758 -1.0616 -2.6162 10 1 4.8394 -0.4319 -3.4782 11 6 4.9305 -2.4364 -2.6950 12 7 4.6200 -3.2168 -1.6939 13 14 5.7140 -3.1548 -4.2310 14 1 7.1831 -3.2530 -4.0377 15 1 5.1565 -4.5076 -4.4848 16 1 5.4252 -2.2747 -5.3918 17 6 4.0799 2.8795 0.1264 18 1 3.7911 3.2840 1.0964 19 8 3.5106 3.6796 -0.9119 20 6 5.5819 2.8921 0.0038 21 6 6.1732 2.9264 -1.2452 22 6 7.5509 2.9419 -1.3575 23 6 8.3374 2.9149 -0.2209 24 6 7.7461 2.8753 1.0280 25 6 6.3683 2.8637 1.1404 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 4.2900 1.4339 -1.9968 34 1 4.7968 -4.1691 -1.7483 35 1 3.7267 3.3772 -1.8046 36 1 5.5588 2.9438 -2.1333 37 1 8.0128 2.9724 -2.3332 38 1 9.4137 2.9243 -0.3087 39 1 8.3605 2.8537 1.9159 40 1 5.9064 2.8329 2.1161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280736802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:28 Heat of formation + Delta-G solvation = -100.367096 kcal Electronic energy + Delta-G solvation = -22277.944771 eV Core-core repulsion = 19055.974186 eV Total energy + Delta-G solvation = -3221.970585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07520 -39.40944 -37.90080 -35.86541 -34.53621 -33.88889 -32.41043 -31.66220 -30.35105 -28.02213 -26.86998 -23.76926 -23.46027 -22.31376 -21.77209 -20.96227 -19.43111 -18.43424 -17.49357 -17.20779 -16.70363 -16.33037 -16.12511 -15.62754 -15.41911 -14.98490 -14.87374 -14.51725 -14.27612 -13.95477 -13.89432 -13.68923 -13.26073 -13.19961 -12.77116 -12.72825 -12.52757 -12.45192 -12.31031 -12.08406 -11.96492 -11.87445 -11.68321 -11.37990 -10.95242 -10.84923 -9.78343 -9.68650 -9.58176 -9.25889 -8.23585 -6.76318 0.46270 0.55004 1.39203 1.39519 1.54191 2.24984 2.56228 2.85431 3.10950 3.47780 3.63510 3.73621 3.94054 3.97701 4.16573 4.22810 4.28800 4.35909 4.41253 4.50768 4.60319 4.65493 4.81014 4.83890 4.91159 5.04371 5.11602 5.13291 5.17632 5.34376 5.36771 5.48373 5.58062 5.64148 5.66827 5.72087 5.96223 6.14870 6.28491 6.36562 6.63180 6.94337 7.63204 8.58661 8.78001 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.007733 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.949921 B = 3619.947420 C = 5261.281727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.108 4.108 4 C 0.131 3.869 5 H 0.050 0.950 6 N -0.741 5.741 7 C 0.552 3.448 8 O -0.613 6.613 9 C -0.574 4.574 10 H 0.080 0.920 11 C 0.034 3.966 12 N -0.819 5.819 13 Si 0.985 3.015 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.249 1.249 17 C 0.155 3.845 18 H 0.127 0.873 19 O -0.552 6.552 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.129 4.129 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.385 0.615 34 H 0.270 0.730 35 H 0.379 0.621 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 13.398 0.831 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.146 4.146 4 C 0.024 3.976 5 H 0.068 0.932 6 N -0.396 5.396 7 C 0.356 3.644 8 O -0.499 6.499 9 C -0.611 4.611 10 H 0.098 0.902 11 C -0.181 4.181 12 N -0.449 5.449 13 Si 0.806 3.194 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.172 1.172 17 C 0.096 3.904 18 H 0.145 0.855 19 O -0.359 6.359 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.092 13.052 2.105 13.385 hybrid contribution 0.724 -1.008 -1.205 1.730 sum 2.817 12.044 0.900 12.401 Atomic orbital electron populations 1.21730 0.94958 1.00979 1.02108 1.21406 0.95692 0.97052 1.00733 1.21812 0.94491 0.95807 1.02509 1.21312 0.94082 0.93178 0.88996 0.93220 1.45756 1.72089 1.06976 1.14827 1.18250 0.77039 0.80502 0.88651 1.90578 1.55499 1.60960 1.42873 1.21368 1.47767 0.93980 0.97963 0.90190 1.26777 0.93775 0.97341 1.00204 1.70185 1.36949 1.05086 1.32667 0.85190 0.78480 0.77853 0.77927 1.19187 1.20103 1.17244 1.21060 0.87435 0.88934 0.93009 0.85549 1.86550 1.75892 1.55520 1.17934 1.20583 0.96478 1.00537 0.94474 1.21031 0.95679 0.99743 0.96889 1.21408 0.93715 0.99712 0.99756 1.21469 1.00949 0.99959 0.92577 1.21411 0.94742 0.99984 0.98598 1.21225 0.94542 1.00517 0.98421 0.91382 0.92360 0.94019 0.95119 0.94607 0.91240 0.90345 0.78081 0.91995 0.77148 0.85567 0.84372 0.84079 0.84117 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.91 71.98 0.71 -3.86 16 2 C -0.11 -4.58 4.53 30.59 0.14 -4.44 16 3 C -0.11 -3.66 4.61 30.59 0.14 -3.51 16 4 C 0.13 4.75 2.15 44.99 0.10 4.85 16 5 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 6 N -0.74 -30.80 4.21 -446.83 -1.88 -32.68 16 7 C 0.55 30.26 6.31 86.36 0.54 30.80 16 8 O -0.61 -38.65 12.18 -4.31 -0.05 -38.70 16 9 C -0.57 -31.67 9.53 24.83 0.24 -31.43 16 10 H 0.08 4.00 7.85 -2.91 -0.02 3.97 16 11 C 0.03 1.88 5.49 85.30 0.47 2.35 16 12 N -0.82 -49.63 11.85 21.83 0.26 -49.37 16 13 Si 0.98 41.04 29.56 68.60 2.03 43.07 16 14 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 16 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 17 C 0.16 4.41 3.12 29.85 0.09 4.50 16 18 H 0.13 3.15 8.05 -2.39 -0.02 3.13 16 19 O -0.55 -14.56 12.36 -148.98 -1.84 -16.40 16 20 C -0.12 -3.54 4.78 -19.86 -0.09 -3.63 16 21 C -0.12 -3.27 8.17 22.27 0.18 -3.09 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 24 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 25 C -0.13 -3.60 9.68 22.27 0.22 -3.38 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 30 H 0.04 1.81 5.65 -2.39 -0.01 1.80 16 31 H 0.07 2.24 7.73 -2.39 -0.02 2.22 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.38 13.85 5.59 -92.71 -0.52 13.33 16 34 H 0.27 15.01 8.29 -92.70 -0.77 14.24 16 35 H 0.38 8.67 6.26 -74.06 -0.46 8.20 16 36 H 0.13 3.15 5.62 -2.91 -0.02 3.13 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -73.32 325.17 1.99 -71.33 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: 0.07 Total: 42.91 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.41 Total: -20.16 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.62 Total: -82.05 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.89 Total: -55.10 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -73.32 1.99 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280736802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.037 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds