Wall clock time and date at job start Mon Mar 30 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53007 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99619 * 90.00069 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00051 * 6 5 4 8 8 C 1.38164 * 120.02855 * 259.99731 * 7 6 5 9 9 C 1.38239 * 120.05874 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.10991 * 0.02562 * 9 8 7 11 11 C 1.38127 * 120.05699 * 0.02562 * 10 9 8 12 12 C 1.38707 * 120.03045 * 79.72186 * 7 6 5 13 13 O 1.35909 * 120.05375 * 359.97438 * 12 7 6 14 14 C 1.34774 * 120.00119 * 269.99893 * 5 4 3 15 15 O 1.21688 * 119.99667 * 180.02562 * 14 5 4 16 16 C 1.46368 * 120.00005 * 0.02562 * 14 5 4 17 17 H 1.07998 * 120.00162 * 359.97438 * 16 14 5 18 18 C 1.40051 * 119.99686 * 179.97438 * 16 14 5 19 19 N 1.30668 * 120.00120 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47134 * 89.99936 * 20 18 16 22 22 H 1.48494 * 109.46938 * 210.00113 * 20 18 16 23 23 H 1.48496 * 109.46873 * 330.00104 * 20 18 16 24 24 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46606 * 299.99700 * 1 2 3 26 26 H 1.09000 * 109.47479 * 59.99335 * 1 2 3 27 27 H 1.09002 * 109.46606 * 240.00300 * 2 1 3 28 28 H 1.08993 * 109.47515 * 120.00225 * 2 1 3 29 29 H 1.09002 * 109.47165 * 60.00642 * 3 2 1 30 30 H 1.08997 * 109.47215 * 299.99937 * 3 2 1 31 31 H 1.09006 * 109.46834 * 59.99650 * 4 3 2 32 32 H 1.09003 * 109.46788 * 300.00337 * 4 3 2 33 33 H 1.09002 * 109.47068 * 210.00020 * 6 5 4 34 34 H 1.09001 * 109.47372 * 330.00108 * 6 5 4 35 35 H 1.08004 * 119.96993 * 359.97438 * 8 7 6 36 36 H 1.08007 * 119.94869 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.97368 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.02558 * 179.97438 * 11 10 9 39 39 H 0.96696 * 113.99606 * 89.99706 * 13 12 7 40 40 H 0.97002 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3031 3.5146 1.2672 7 6 5.7266 3.2778 1.7017 8 6 6.0073 2.3230 2.6601 9 6 7.3129 2.1050 3.0587 10 6 8.3410 2.8419 2.5001 11 6 8.0656 3.7984 1.5424 12 6 6.7567 4.0144 1.1358 13 8 6.4839 4.9499 0.1885 14 6 4.2826 3.4586 -1.1687 15 8 4.6887 4.6058 -1.1691 16 6 4.0376 2.7685 -2.4360 17 1 3.6776 1.7503 -2.4356 18 6 4.2700 3.4286 -3.6491 19 7 4.7051 4.6607 -3.6496 20 14 3.9567 2.5481 -5.2666 21 1 2.5538 2.7820 -5.6938 22 1 4.8834 3.0710 -6.3024 23 1 4.1837 1.0913 -5.0891 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9284 0.8891 33 1 4.1361 4.5838 1.1367 34 1 3.6226 3.1307 2.0273 35 1 5.2059 1.7464 3.0982 36 1 7.5303 1.3578 3.8077 37 1 9.3602 2.6700 2.8135 38 1 8.8689 4.3740 1.1068 39 1 6.3138 5.8325 0.5450 40 1 4.8658 5.1180 -4.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282480586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:59 Heat of formation + Delta-G solvation = -61.739971 kcal Electronic energy + Delta-G solvation = -22132.308360 eV Core-core repulsion = 18912.012772 eV Total energy + Delta-G solvation = -3220.295588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41645 -37.50580 -35.83406 -35.09180 -33.46966 -32.22647 -31.14321 -29.37485 -27.97094 -26.69082 -24.72976 -22.85650 -22.03461 -21.10627 -20.64253 -18.92990 -17.55772 -16.38321 -15.75989 -15.49476 -15.15089 -14.79649 -14.76204 -14.27856 -13.91682 -13.74185 -13.28527 -12.93841 -12.53713 -12.28343 -12.19984 -11.82040 -11.75286 -11.43204 -11.39129 -11.07809 -11.01551 -10.83229 -10.71767 -10.65343 -10.59117 -10.17122 -10.06620 -9.82357 -9.59604 -8.71810 -8.51389 -8.08088 -7.29891 -7.05873 -6.04517 -4.48157 1.70829 1.73017 3.19074 3.26264 3.29002 4.01564 4.21309 4.70754 4.75334 4.95491 5.22983 5.26643 5.31798 5.36934 5.41585 5.49790 5.61933 5.79310 5.85283 5.94141 6.00171 6.08431 6.15898 6.18632 6.22047 6.35025 6.37521 6.43114 6.49144 6.56219 6.75825 6.79653 6.82057 6.97834 7.05245 7.28310 7.56777 7.77626 8.28481 8.48926 8.57579 9.16456 9.60044 10.73687 10.96800 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.007473 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.355740 B = 3746.133235 C = 5426.734952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.131 3.869 5 N -0.636 5.636 6 C 0.170 3.830 7 C -0.122 4.122 8 C -0.101 4.101 9 C -0.145 4.145 10 C -0.113 4.113 11 C -0.160 4.160 12 C 0.136 3.864 13 O -0.443 6.443 14 C 0.556 3.444 15 O -0.542 6.542 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.089 3.911 19 N -0.766 5.766 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.375 0.625 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -5.625 11.069 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.006 3.994 5 N -0.373 5.373 6 C 0.046 3.954 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.163 4.163 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.089 3.911 13 O -0.251 6.251 14 C 0.360 3.640 15 O -0.421 6.421 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.130 4.130 19 N -0.396 5.396 20 Si 0.723 3.277 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.230 0.770 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.038 -5.245 10.524 11.759 hybrid contribution -0.137 -0.316 -0.509 0.615 sum -0.099 -5.561 10.015 11.455 Atomic orbital electron populations 1.21756 0.96460 1.00782 1.01697 1.21466 0.95340 0.97665 1.01489 1.22054 0.97504 0.95559 1.02313 1.21158 0.92301 0.84949 1.00960 1.48165 1.71186 1.13193 1.04720 1.19731 0.89292 0.99126 0.87253 1.21043 0.98003 0.97511 0.95869 1.20903 0.96415 0.97297 0.97386 1.20972 0.93020 1.00805 1.01522 1.20886 0.98692 0.96418 0.97188 1.21499 0.96710 1.00939 0.98747 1.18618 0.91007 0.93139 0.88297 1.85385 1.91540 1.19590 1.28625 1.18188 0.77649 0.86198 0.81929 1.90595 1.48004 1.17958 1.85562 1.20971 1.47464 1.00106 0.89409 0.91464 1.25655 0.93026 0.94385 0.99889 1.70020 1.32697 1.10135 1.26715 0.86531 0.78540 0.80440 0.82185 1.19908 1.20640 1.19070 0.93409 0.93175 0.92692 0.92019 0.92708 0.93079 0.90906 0.90504 0.93734 0.90343 0.92505 0.86519 0.86695 0.86615 0.86158 0.76964 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.81 16 3 C -0.14 -2.26 5.54 -26.73 -0.15 -2.41 16 4 C 0.13 2.48 5.12 -4.04 -0.02 2.46 16 5 N -0.64 -14.26 2.46 -176.72 -0.43 -14.70 16 6 C 0.17 3.31 5.38 -5.19 -0.03 3.28 16 7 C -0.12 -2.25 5.47 -104.47 -0.57 -2.82 16 8 C -0.10 -1.57 9.66 -39.61 -0.38 -1.95 16 9 C -0.15 -2.04 10.04 -39.56 -0.40 -2.44 16 10 C -0.11 -1.65 10.04 -39.61 -0.40 -2.04 16 11 C -0.16 -2.71 9.99 -39.43 -0.39 -3.10 16 12 C 0.14 2.65 6.68 -39.22 -0.26 2.39 16 13 O -0.44 -9.81 9.20 -43.71 -0.40 -10.21 16 14 C 0.56 15.46 7.53 -12.99 -0.10 15.36 16 15 O -0.54 -16.45 11.15 -19.05 -0.21 -16.66 16 16 C -0.54 -15.27 8.74 -35.63 -0.31 -15.58 16 17 H 0.07 1.76 6.00 -52.49 -0.31 1.45 16 18 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 19 N -0.77 -22.97 11.83 55.55 0.66 -22.32 16 20 Si 0.90 20.57 29.56 -169.99 -5.02 15.54 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.58 6.09 -51.93 -0.32 1.27 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.08 1.65 7.14 -51.93 -0.37 1.28 16 34 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 35 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 36 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.38 6.69 9.06 45.56 0.41 7.11 16 40 H 0.26 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -33.89 332.85 -8.50 -42.39 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.20 Total: 8.61 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.90 Total: -7.69 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.22 Total: -37.01 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.61 Total: -26.87 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.89 -8.50 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282480586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.345 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds