Wall clock time and date at job start Mon Mar 30 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53007 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99619 * 90.00069 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00051 * 6 5 4 8 8 C 1.38164 * 120.02855 * 259.99731 * 7 6 5 9 9 C 1.38239 * 120.05874 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.10991 * 0.02562 * 9 8 7 11 11 C 1.38127 * 120.05699 * 0.02562 * 10 9 8 12 12 C 1.38707 * 120.03045 * 79.72186 * 7 6 5 13 13 O 1.35909 * 120.05375 * 359.97438 * 12 7 6 14 14 C 1.34774 * 120.00119 * 269.99893 * 5 4 3 15 15 O 1.21688 * 119.99667 * 180.02562 * 14 5 4 16 16 C 1.46368 * 120.00005 * 0.02562 * 14 5 4 17 17 H 1.07998 * 120.00162 * 359.97438 * 16 14 5 18 18 C 1.40051 * 119.99686 * 179.97438 * 16 14 5 19 19 N 1.30668 * 120.00120 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47134 * 89.99936 * 20 18 16 22 22 H 1.48494 * 109.46938 * 210.00113 * 20 18 16 23 23 H 1.48496 * 109.46873 * 330.00104 * 20 18 16 24 24 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46606 * 299.99700 * 1 2 3 26 26 H 1.09000 * 109.47479 * 59.99335 * 1 2 3 27 27 H 1.09002 * 109.46606 * 240.00300 * 2 1 3 28 28 H 1.08993 * 109.47515 * 120.00225 * 2 1 3 29 29 H 1.09002 * 109.47165 * 60.00642 * 3 2 1 30 30 H 1.08997 * 109.47215 * 299.99937 * 3 2 1 31 31 H 1.09006 * 109.46834 * 59.99650 * 4 3 2 32 32 H 1.09003 * 109.46788 * 300.00337 * 4 3 2 33 33 H 1.09002 * 109.47068 * 210.00020 * 6 5 4 34 34 H 1.09001 * 109.47372 * 330.00108 * 6 5 4 35 35 H 1.08004 * 119.96993 * 359.97438 * 8 7 6 36 36 H 1.08007 * 119.94869 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.97368 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.02558 * 179.97438 * 11 10 9 39 39 H 0.96696 * 113.99606 * 89.99706 * 13 12 7 40 40 H 0.97002 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3031 3.5146 1.2672 7 6 5.7266 3.2778 1.7017 8 6 6.0073 2.3230 2.6601 9 6 7.3129 2.1050 3.0587 10 6 8.3410 2.8419 2.5001 11 6 8.0656 3.7984 1.5424 12 6 6.7567 4.0144 1.1358 13 8 6.4839 4.9499 0.1885 14 6 4.2826 3.4586 -1.1687 15 8 4.6887 4.6058 -1.1691 16 6 4.0376 2.7685 -2.4360 17 1 3.6776 1.7503 -2.4356 18 6 4.2700 3.4286 -3.6491 19 7 4.7051 4.6607 -3.6496 20 14 3.9567 2.5481 -5.2666 21 1 2.5538 2.7820 -5.6938 22 1 4.8834 3.0710 -6.3024 23 1 4.1837 1.0913 -5.0891 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9284 0.8891 33 1 4.1361 4.5838 1.1367 34 1 3.6226 3.1307 2.0273 35 1 5.2059 1.7464 3.0982 36 1 7.5303 1.3578 3.8077 37 1 9.3602 2.6700 2.8135 38 1 8.8689 4.3740 1.1068 39 1 6.3138 5.8325 0.5450 40 1 4.8658 5.1180 -4.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282480586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:59 Heat of formation + Delta-G solvation = -82.689176 kcal Electronic energy + Delta-G solvation = -22133.216785 eV Core-core repulsion = 18912.012772 eV Total energy + Delta-G solvation = -3221.204013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82774 -39.26675 -37.30518 -36.69452 -35.06466 -34.27975 -32.51948 -30.67200 -29.32734 -28.63402 -26.37656 -24.29167 -23.31449 -22.55201 -21.89526 -20.76219 -19.01420 -18.24492 -17.65217 -16.87385 -16.58507 -16.38520 -16.16231 -15.75898 -15.63106 -15.08114 -14.63360 -14.28974 -14.15447 -13.70363 -13.64562 -13.32274 -13.21279 -12.95087 -12.87953 -12.77614 -12.68696 -12.32617 -12.13647 -12.00542 -11.98063 -11.93027 -11.61960 -11.31685 -11.08498 -10.80916 -9.81929 -9.50353 -9.28745 -8.86166 -8.14486 -6.67505 0.43251 0.46967 1.37168 1.38855 1.51810 2.26701 2.62304 2.73486 3.17226 3.59677 3.79696 3.98003 4.03675 4.14359 4.20969 4.28262 4.37040 4.40280 4.51851 4.64662 4.70188 4.79657 4.81880 4.99054 5.04193 5.06914 5.09276 5.16419 5.19235 5.37007 5.44697 5.50757 5.52426 5.59751 5.61621 5.72046 5.96735 6.07062 6.27078 6.58830 7.00985 7.13325 7.62112 8.65853 8.89450 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.007473 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.355740 B = 3746.133235 C = 5426.734952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.130 3.870 5 N -0.638 5.638 6 C 0.173 3.827 7 C -0.144 4.144 8 C -0.097 4.097 9 C -0.135 4.135 10 C -0.106 4.106 11 C -0.174 4.174 12 C 0.096 3.904 13 O -0.479 6.479 14 C 0.541 3.459 15 O -0.579 6.579 16 C -0.569 4.569 17 H 0.079 0.921 18 C 0.032 3.968 19 N -0.818 5.818 20 Si 0.979 3.021 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.254 1.254 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.380 0.620 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -8.926 12.853 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.164 4.164 4 C 0.006 3.994 5 N -0.373 5.373 6 C 0.049 3.951 7 C -0.146 4.146 8 C -0.116 4.116 9 C -0.153 4.153 10 C -0.124 4.124 11 C -0.193 4.193 12 C 0.051 3.949 13 O -0.288 6.288 14 C 0.345 3.655 15 O -0.462 6.462 16 C -0.606 4.606 17 H 0.097 0.903 18 C -0.182 4.182 19 N -0.449 5.449 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.177 1.177 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.236 0.764 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.080 -8.586 12.356 15.047 hybrid contribution -0.052 0.694 -0.891 1.130 sum -0.133 -7.893 11.466 13.920 Atomic orbital electron populations 1.21739 0.95227 1.02057 1.01505 1.21430 0.96383 0.95179 1.02375 1.21924 0.95752 0.97733 1.00996 1.21313 0.93718 0.82964 1.01379 1.47963 1.70458 1.14388 1.04517 1.19798 0.91330 0.97364 0.86579 1.20996 0.96723 0.99189 0.97662 1.21230 0.98239 0.96135 0.95983 1.21463 0.91984 1.00581 1.01239 1.21325 1.00821 0.94782 0.95498 1.21650 0.95649 1.02153 0.99803 1.19044 0.92759 0.93701 0.89421 1.85349 1.91942 1.20650 1.30858 1.18434 0.77412 0.86057 0.83639 1.90562 1.49348 1.19501 1.86749 1.21443 1.47845 1.00846 0.90457 0.90346 1.26765 0.92194 0.95060 1.04197 1.70198 1.34434 1.12265 1.27968 0.85295 0.78797 0.79411 0.76528 1.18718 1.20133 1.17704 0.91384 0.92422 0.93922 0.92515 0.90405 0.92159 0.94457 0.92618 0.90570 0.93371 0.89047 0.83605 0.82534 0.83126 0.85947 0.76414 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.51 16 2 C -0.12 -2.86 5.93 30.59 0.18 -2.68 16 3 C -0.12 -4.06 5.54 30.60 0.17 -3.89 16 4 C 0.13 4.81 5.12 86.38 0.44 5.25 16 5 N -0.64 -29.19 2.46 -831.23 -2.04 -31.23 16 6 C 0.17 6.79 5.38 85.63 0.46 7.25 16 7 C -0.14 -5.25 5.47 -19.77 -0.11 -5.36 16 8 C -0.10 -2.70 9.66 22.25 0.22 -2.49 16 9 C -0.13 -3.21 10.04 22.28 0.22 -2.98 16 10 C -0.11 -2.76 10.04 22.25 0.22 -2.53 16 11 C -0.17 -5.84 9.99 22.37 0.22 -5.62 16 12 C 0.10 3.89 6.68 22.50 0.15 4.04 16 13 O -0.48 -22.96 9.20 -69.33 -0.64 -23.60 16 14 C 0.54 31.53 7.53 86.36 0.65 32.18 16 15 O -0.58 -37.46 11.15 18.88 0.21 -37.25 16 16 C -0.57 -33.16 8.74 24.83 0.22 -32.95 16 17 H 0.08 4.22 6.00 -2.91 -0.02 4.20 16 18 C 0.03 1.86 5.50 85.31 0.47 2.33 16 19 N -0.82 -51.39 11.83 21.84 0.26 -51.13 16 20 Si 0.98 43.13 29.56 68.60 2.03 45.16 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.29 6.09 -2.38 -0.01 2.28 16 32 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.05 2.15 7.14 -2.39 -0.02 2.14 16 34 H 0.09 2.86 7.93 -2.39 -0.02 2.84 16 35 H 0.15 3.14 8.04 -2.91 -0.02 3.12 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.38 15.37 9.06 -74.06 -0.67 14.70 16 40 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -78.63 332.85 4.41 -74.22 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.36 Total: 33.78 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.23 Total: -9.94 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -1.78 Total: -82.36 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.43 Total: -60.86 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.63 4.41 -74.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282480586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.468 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds