Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 H 1.08996 * 109.47252 * 305.00224 * 3 2 1 5 5 C 1.50702 * 109.47205 * 184.99608 * 3 2 1 6 6 C 1.38287 * 119.96851 * 111.04792 * 5 3 2 7 7 C 1.38245 * 120.11117 * 179.72526 * 6 5 3 8 8 C 1.38175 * 120.05314 * 0.55176 * 7 6 5 9 9 C 1.38714 * 119.93920 * 359.72600 * 8 7 6 10 10 O 1.35902 * 120.04934 * 179.97438 * 9 8 7 11 11 C 1.42895 * 117.00083 * 0.02562 * 10 9 8 12 12 C 1.38119 * 119.97134 * 291.32547 * 5 3 2 13 13 N 1.46509 * 109.46745 * 64.99745 * 3 2 1 14 14 C 1.46502 * 119.99619 * 53.95301 * 13 3 2 15 15 C 1.34777 * 119.99838 * 233.94252 * 13 3 2 16 16 O 1.21688 * 120.00146 * 0.02562 * 15 13 3 17 17 C 1.46375 * 119.99700 * 180.02562 * 15 13 3 18 18 H 1.07999 * 120.00091 * 0.02562 * 17 15 13 19 19 C 1.40047 * 119.99510 * 180.02562 * 17 15 13 20 20 N 1.30668 * 120.00668 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99542 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47233 * 60.00013 * 21 19 17 23 23 H 1.48500 * 109.46882 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46987 * 300.00009 * 21 19 17 25 25 H 1.09001 * 109.47301 * 60.00039 * 1 2 3 26 26 H 1.09002 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47166 * 299.99963 * 1 2 3 28 28 H 1.08999 * 109.47166 * 240.00037 * 2 1 3 29 29 H 1.09003 * 109.46817 * 120.00143 * 2 1 3 30 30 H 1.07997 * 119.94592 * 359.97438 * 6 5 3 31 31 H 1.07990 * 119.97648 * 180.25566 * 7 6 5 32 32 H 1.07997 * 120.02953 * 179.70430 * 8 7 6 33 33 H 1.09006 * 109.47550 * 180.02562 * 11 10 9 34 34 H 1.08996 * 109.47657 * 300.00477 * 11 10 9 35 35 H 1.08997 * 109.47135 * 60.00367 * 11 10 9 36 36 H 1.07994 * 120.03421 * 0.02562 * 12 5 3 37 37 H 1.08992 * 109.47349 * 94.71800 * 14 13 3 38 38 H 1.09006 * 109.46588 * 214.71370 * 14 13 3 39 39 H 1.08999 * 109.47298 * 334.70617 * 14 13 3 40 40 H 0.96995 * 120.00631 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1237 6 6 4.1391 1.9077 -1.2818 7 6 5.5168 1.9160 -1.3962 8 6 6.3002 1.4505 -0.3577 9 6 5.7034 0.9798 0.8027 10 8 6.4718 0.5209 1.8254 11 6 7.8880 0.5527 1.6376 12 6 4.3206 0.9779 0.9173 13 7 1.6523 2.0975 1.2519 14 6 2.0013 1.4864 2.5368 15 6 0.9749 3.2622 1.2213 16 8 0.6848 3.7696 0.1540 17 6 0.5880 3.9168 2.4721 18 1 0.8458 3.4667 3.4194 19 6 -0.1164 5.1268 2.4403 20 7 -0.4287 5.6712 1.2942 21 14 -0.6094 5.9626 4.0365 22 1 0.6076 6.2766 4.8274 23 1 -1.3404 7.2189 3.7322 24 1 -1.4880 5.0564 4.8189 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5283 2.2674 -2.0965 31 1 5.9809 2.2822 -2.2999 32 1 7.3763 1.4527 -0.4494 33 1 8.3814 0.1593 2.5265 34 1 8.1540 -0.0576 0.7747 35 1 8.2091 1.5805 1.4684 36 1 3.8537 0.6116 1.8196 37 1 2.9355 1.9139 2.9007 38 1 1.2076 1.6799 3.2586 39 1 2.1200 0.4106 2.4073 40 1 -0.9169 6.5091 1.2722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291730638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -45.946620 kcal Electronic energy + Delta-G solvation = -22025.484255 eV Core-core repulsion = 18805.873519 eV Total energy + Delta-G solvation = -3219.610737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07447 -38.48535 -36.86767 -34.85050 -32.44124 -31.96067 -30.72692 -30.08448 -27.30606 -26.81576 -26.01298 -24.58453 -22.32355 -21.55028 -20.67481 -18.84193 -17.46138 -16.59425 -16.13824 -15.66102 -15.63249 -15.50225 -14.87353 -14.44202 -14.10981 -13.78359 -13.45609 -13.21648 -12.75694 -12.51477 -12.38409 -12.18726 -11.66593 -11.61763 -11.43679 -11.41608 -11.20310 -11.05179 -10.92425 -10.80873 -10.62167 -10.37309 -10.23556 -10.20367 -10.08172 -8.82400 -8.52800 -7.95502 -7.54462 -7.18883 -6.16583 -4.61667 1.60333 1.73566 3.17114 3.22083 3.23747 3.37125 3.99006 4.13781 4.58036 4.66003 4.92021 5.00239 5.09072 5.14860 5.25574 5.39376 5.51695 5.58257 5.64693 5.75601 5.79732 5.84375 5.92059 5.99519 6.20619 6.25876 6.30996 6.39995 6.52099 6.55843 6.57486 6.66507 6.70707 6.83257 7.00519 7.05065 7.46897 7.58022 7.66172 8.16841 8.38891 9.04958 9.45274 10.60349 10.79225 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.005350 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.978411 B = 5232.741504 C = 5753.411234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.182 3.818 4 H 0.104 0.896 5 C -0.037 4.037 6 C -0.145 4.145 7 C -0.085 4.085 8 C -0.219 4.219 9 C 0.119 3.881 10 O -0.320 6.320 11 C 0.030 3.970 12 C -0.145 4.145 13 N -0.634 5.634 14 C 0.096 3.904 15 C 0.560 3.440 16 O -0.577 6.577 17 C -0.541 4.541 18 H 0.071 0.929 19 C 0.088 3.912 20 N -0.767 5.767 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.398 -10.736 -0.674 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.077 3.923 4 H 0.122 0.878 5 C -0.039 4.039 6 C -0.163 4.163 7 C -0.103 4.103 8 C -0.238 4.238 9 C 0.074 3.926 10 O -0.233 6.233 11 C -0.065 4.065 12 C -0.163 4.163 13 N -0.371 5.371 14 C -0.048 4.048 15 C 0.366 3.634 16 O -0.459 6.459 17 C -0.578 4.578 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.396 5.396 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.063 -10.359 -1.168 15.201 hybrid contribution 0.245 0.551 0.738 0.953 sum 11.308 -9.807 -0.429 14.975 Atomic orbital electron populations 1.21660 0.95196 1.00233 1.03042 1.21855 0.96690 0.96387 1.01465 1.19671 0.87705 0.93185 0.91789 0.87843 1.20346 0.96962 0.94042 0.92520 1.21025 0.94520 1.02336 0.98457 1.20843 0.93657 0.97931 0.97858 1.21100 0.99753 1.07853 0.95049 1.19011 0.91055 0.95447 0.87069 1.86055 1.18162 1.79825 1.39304 1.22975 0.79253 1.01530 1.02786 1.20615 0.89922 1.04930 1.00870 1.47936 1.61003 1.25342 1.02806 1.21531 1.00002 0.95812 0.87418 1.18221 0.76680 0.77830 0.90675 1.90582 1.58661 1.64272 1.32424 1.20962 1.38022 1.06819 0.92009 0.91083 1.25717 0.94016 0.96672 0.96747 1.70005 1.28583 1.15445 1.25549 0.86478 0.79203 0.78761 0.82592 1.19309 1.20590 1.19267 0.92825 0.93688 0.91827 0.92012 0.91976 0.85887 0.86207 0.86148 0.88604 0.92998 0.92880 0.84557 0.94663 0.91398 0.93405 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.80 37.16 0.36 -2.02 16 2 C -0.13 -2.02 5.12 -26.73 -0.14 -2.16 16 3 C 0.18 3.58 2.34 -69.08 -0.16 3.42 16 4 H 0.10 2.32 6.68 -51.93 -0.35 1.97 16 5 C -0.04 -0.67 4.95 -104.65 -0.52 -1.19 16 6 C -0.14 -2.43 9.67 -39.56 -0.38 -2.81 16 7 C -0.08 -1.23 10.04 -39.60 -0.40 -1.63 16 8 C -0.22 -3.10 9.04 -39.43 -0.36 -3.45 16 9 C 0.12 1.87 6.69 -39.22 -0.26 1.61 16 10 O -0.32 -4.57 10.50 -19.43 -0.20 -4.78 16 11 C 0.03 0.29 9.81 101.05 0.99 1.28 16 12 C -0.14 -2.49 8.44 -39.44 -0.33 -2.82 16 13 N -0.63 -14.28 2.20 -176.92 -0.39 -14.67 16 14 C 0.10 1.82 7.78 59.85 0.47 2.29 16 15 C 0.56 15.80 7.61 -12.99 -0.10 15.70 16 16 O -0.58 -18.40 14.36 5.20 0.07 -18.33 16 17 C -0.54 -15.22 8.73 -35.63 -0.31 -15.53 16 18 H 0.07 1.83 6.10 -52.49 -0.32 1.51 16 19 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 20 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 21 Si 0.90 20.23 29.56 -169.99 -5.02 15.21 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.20 7.75 -51.93 -0.40 0.80 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.94 6.17 -51.93 -0.32 0.62 16 30 H 0.12 1.98 7.96 -52.49 -0.42 1.56 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 35 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.14 2.28 4.70 -52.49 -0.25 2.03 16 37 H 0.03 0.66 7.27 -51.93 -0.38 0.29 16 38 H 0.07 1.31 6.37 -51.93 -0.33 0.98 16 39 H 0.05 0.76 5.12 -51.93 -0.27 0.49 16 40 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -34.13 323.93 -6.64 -40.77 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.40 Total: 4.16 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.23 Total: -4.95 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.27 Total: -36.96 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.13 Total: -23.11 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.13 -6.64 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291730638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.177 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds