Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 H 1.08996 * 109.47252 * 305.00224 * 3 2 1 5 5 C 1.50702 * 109.47205 * 184.99608 * 3 2 1 6 6 C 1.38287 * 119.96851 * 111.04792 * 5 3 2 7 7 C 1.38245 * 120.11117 * 179.72526 * 6 5 3 8 8 C 1.38175 * 120.05314 * 0.55176 * 7 6 5 9 9 C 1.38714 * 119.93920 * 359.72600 * 8 7 6 10 10 O 1.35902 * 120.04934 * 179.97438 * 9 8 7 11 11 C 1.42895 * 117.00083 * 0.02562 * 10 9 8 12 12 C 1.38119 * 119.97134 * 291.32547 * 5 3 2 13 13 N 1.46509 * 109.46745 * 64.99745 * 3 2 1 14 14 C 1.46502 * 119.99619 * 53.95301 * 13 3 2 15 15 C 1.34777 * 119.99838 * 233.94252 * 13 3 2 16 16 O 1.21688 * 120.00146 * 0.02562 * 15 13 3 17 17 C 1.46375 * 119.99700 * 180.02562 * 15 13 3 18 18 H 1.07999 * 120.00091 * 0.02562 * 17 15 13 19 19 C 1.40047 * 119.99510 * 180.02562 * 17 15 13 20 20 N 1.30668 * 120.00668 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99542 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47233 * 60.00013 * 21 19 17 23 23 H 1.48500 * 109.46882 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46987 * 300.00009 * 21 19 17 25 25 H 1.09001 * 109.47301 * 60.00039 * 1 2 3 26 26 H 1.09002 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47166 * 299.99963 * 1 2 3 28 28 H 1.08999 * 109.47166 * 240.00037 * 2 1 3 29 29 H 1.09003 * 109.46817 * 120.00143 * 2 1 3 30 30 H 1.07997 * 119.94592 * 359.97438 * 6 5 3 31 31 H 1.07990 * 119.97648 * 180.25566 * 7 6 5 32 32 H 1.07997 * 120.02953 * 179.70430 * 8 7 6 33 33 H 1.09006 * 109.47550 * 180.02562 * 11 10 9 34 34 H 1.08996 * 109.47657 * 300.00477 * 11 10 9 35 35 H 1.08997 * 109.47135 * 60.00367 * 11 10 9 36 36 H 1.07994 * 120.03421 * 0.02562 * 12 5 3 37 37 H 1.08992 * 109.47349 * 94.71800 * 14 13 3 38 38 H 1.09006 * 109.46588 * 214.71370 * 14 13 3 39 39 H 1.08999 * 109.47298 * 334.70617 * 14 13 3 40 40 H 0.96995 * 120.00631 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1237 6 6 4.1391 1.9077 -1.2818 7 6 5.5168 1.9160 -1.3962 8 6 6.3002 1.4505 -0.3577 9 6 5.7034 0.9798 0.8027 10 8 6.4718 0.5209 1.8254 11 6 7.8880 0.5527 1.6376 12 6 4.3206 0.9779 0.9173 13 7 1.6523 2.0975 1.2519 14 6 2.0013 1.4864 2.5368 15 6 0.9749 3.2622 1.2213 16 8 0.6848 3.7696 0.1540 17 6 0.5880 3.9168 2.4721 18 1 0.8458 3.4667 3.4194 19 6 -0.1164 5.1268 2.4403 20 7 -0.4287 5.6712 1.2942 21 14 -0.6094 5.9626 4.0365 22 1 0.6076 6.2766 4.8274 23 1 -1.3404 7.2189 3.7322 24 1 -1.4880 5.0564 4.8189 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5283 2.2674 -2.0965 31 1 5.9809 2.2822 -2.2999 32 1 7.3763 1.4527 -0.4494 33 1 8.3814 0.1593 2.5265 34 1 8.1540 -0.0576 0.7747 35 1 8.2091 1.5805 1.4684 36 1 3.8537 0.6116 1.8196 37 1 2.9355 1.9139 2.9007 38 1 1.2076 1.6799 3.2586 39 1 2.1200 0.4106 2.4073 40 1 -0.9169 6.5091 1.2722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291730638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -67.655029 kcal Electronic energy + Delta-G solvation = -22026.425603 eV Core-core repulsion = 18805.873519 eV Total energy + Delta-G solvation = -3220.552084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30929 -40.01981 -38.35839 -36.56995 -34.59245 -33.60900 -31.98330 -31.27833 -28.71625 -28.06066 -27.83557 -26.17122 -23.55608 -22.87476 -22.29669 -20.46204 -18.66778 -18.50319 -17.78586 -17.14574 -16.81550 -16.60833 -16.49603 -15.96059 -15.84046 -15.13460 -14.72658 -14.56316 -14.36157 -14.17880 -13.62916 -13.39520 -13.29537 -13.10363 -13.05756 -12.94516 -12.71561 -12.65378 -12.27410 -12.20283 -12.14315 -11.99896 -11.86004 -11.64948 -11.56276 -10.90189 -9.86904 -9.65834 -9.14181 -9.03819 -8.26085 -6.81543 0.36583 0.50698 1.39080 1.42533 1.53545 2.24334 2.38762 2.49197 2.70663 3.02742 3.60494 3.74594 3.90126 4.07565 4.19802 4.22537 4.34599 4.37979 4.42729 4.46181 4.53897 4.58281 4.62254 4.75297 4.78749 4.85448 4.98491 5.02265 5.05551 5.11492 5.23475 5.33470 5.37298 5.42404 5.47449 5.70526 5.80636 5.82001 6.15774 6.46583 6.49985 6.90034 7.45077 8.50872 8.70332 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.005350 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.978411 B = 5232.741504 C = 5753.411234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.181 3.819 4 H 0.063 0.937 5 C -0.056 4.056 6 C -0.168 4.168 7 C -0.079 4.079 8 C -0.212 4.212 9 C 0.116 3.884 10 O -0.335 6.335 11 C 0.018 3.982 12 C -0.160 4.160 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.544 3.456 16 O -0.629 6.629 17 C -0.569 4.569 18 H 0.089 0.911 19 C 0.030 3.970 20 N -0.821 5.821 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.253 1.253 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 -12.038 0.922 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.058 4.058 6 C -0.187 4.187 7 C -0.097 4.097 8 C -0.231 4.231 9 C 0.071 3.929 10 O -0.249 6.249 11 C -0.076 4.076 12 C -0.179 4.179 13 N -0.367 5.367 14 C -0.045 4.045 15 C 0.350 3.650 16 O -0.516 6.516 17 C -0.605 4.605 18 H 0.107 0.893 19 C -0.185 4.185 20 N -0.450 5.450 21 Si 0.811 3.189 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.177 1.177 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.264 -11.725 0.445 17.709 hybrid contribution -0.276 0.869 0.196 0.933 sum 12.988 -10.856 0.642 16.939 Atomic orbital electron populations 1.21622 0.95692 1.01669 1.00706 1.21802 0.96075 0.94138 1.03316 1.19724 0.89263 0.94384 0.88987 0.91877 1.20173 0.95754 0.96008 0.93835 1.21154 0.95981 1.03329 0.98247 1.21179 0.92553 0.96811 0.99182 1.21483 1.01498 1.06159 0.93947 1.19103 0.90837 0.95005 0.87921 1.86039 1.20458 1.79444 1.38967 1.23343 0.76725 1.02605 1.04906 1.20606 0.91005 1.05766 1.00516 1.47726 1.59731 1.24122 1.05152 1.21646 0.99661 0.97622 0.85565 1.18565 0.76981 0.79216 0.90238 1.90530 1.60843 1.66296 1.33955 1.21484 1.38577 1.07716 0.92757 0.89284 1.26939 0.93301 0.97147 1.01070 1.70186 1.29773 1.16233 1.28854 0.85161 0.79249 0.77530 0.76932 1.18088 1.19947 1.17670 0.94648 0.90235 0.94692 0.89791 0.90220 0.86619 0.83149 0.82710 0.86237 0.91319 0.92147 0.84546 0.94484 0.91921 0.89992 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.80 71.98 0.71 -3.97 16 2 C -0.12 -3.68 5.12 30.59 0.16 -3.52 16 3 C 0.18 7.41 2.34 44.24 0.10 7.51 16 4 H 0.06 3.07 6.68 -2.39 -0.02 3.05 16 5 C -0.06 -2.06 4.95 -19.88 -0.10 -2.16 16 6 C -0.17 -5.72 9.67 22.28 0.22 -5.51 16 7 C -0.08 -2.16 10.04 22.26 0.22 -1.94 16 8 C -0.21 -5.39 9.04 22.37 0.20 -5.19 16 9 C 0.12 3.43 6.69 22.51 0.15 3.58 16 10 O -0.33 -8.69 10.50 -92.45 -0.97 -9.66 16 11 C 0.02 0.28 9.81 113.37 1.11 1.40 16 12 C -0.16 -5.37 8.44 22.36 0.19 -5.18 16 13 N -0.63 -29.44 2.20 -831.87 -1.83 -31.27 16 14 C 0.10 3.68 7.78 127.77 0.99 4.67 16 15 C 0.54 32.22 7.61 86.36 0.66 32.88 16 16 O -0.63 -42.83 14.36 -4.31 -0.06 -42.89 16 17 C -0.57 -32.82 8.73 24.83 0.22 -32.60 16 18 H 0.09 4.62 6.10 -2.91 -0.02 4.61 16 19 C 0.03 1.73 5.50 85.30 0.47 2.20 16 20 N -0.82 -51.13 11.83 21.83 0.26 -50.87 16 21 Si 0.99 41.80 29.56 68.60 2.03 43.83 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.03 1.35 7.75 -2.39 -0.02 1.33 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.26 6.17 -2.39 -0.01 2.25 16 30 H 0.12 3.96 7.96 -2.91 -0.02 3.94 16 31 H 0.15 3.09 8.06 -2.92 -0.02 3.07 16 32 H 0.16 2.80 6.30 -2.91 -0.02 2.78 16 33 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 35 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 36 H 0.14 4.40 4.70 -2.91 -0.01 4.39 16 37 H 0.04 1.38 7.27 -2.39 -0.02 1.36 16 38 H 0.06 2.40 6.37 -2.38 -0.02 2.39 16 39 H 0.08 2.48 5.12 -2.39 -0.01 2.47 16 40 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 Total: -1.00 -78.89 323.93 5.77 -73.12 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 1.05 Total: 25.58 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.30 Total: -7.83 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.57 Total: -82.14 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.03 Total: -52.55 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -78.89 5.77 -73.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291730638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.462 kcal (2) G-P(sol) polarization free energy of solvation -78.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds