Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46675 * 2 1 4 4 H 1.09004 * 109.47256 * 55.00374 * 3 2 1 5 5 C 1.50707 * 109.46915 * 174.99915 * 3 2 1 6 6 C 1.38281 * 119.97355 * 65.31034 * 5 3 2 7 7 C 1.38243 * 120.11487 * 180.02562 * 6 5 3 8 8 C 1.38169 * 120.05220 * 359.95382 * 7 6 5 9 9 C 1.38706 * 119.94479 * 0.02562 * 8 7 6 10 10 O 1.35899 * 120.05451 * 180.02562 * 9 8 7 11 11 C 1.42896 * 117.00084 * 0.02562 * 10 9 8 12 12 C 1.38126 * 119.96820 * 245.03073 * 5 3 2 13 13 N 1.46497 * 109.47657 * 294.99849 * 3 2 1 14 14 C 1.46503 * 119.99811 * 305.99821 * 13 3 2 15 15 C 1.34776 * 120.00493 * 125.99289 * 13 3 2 16 16 O 1.21696 * 119.99603 * 0.02562 * 15 13 3 17 17 C 1.46373 * 120.00271 * 180.02562 * 15 13 3 18 18 H 1.07995 * 119.99847 * 0.02562 * 17 15 13 19 19 C 1.40047 * 119.99928 * 180.02562 * 17 15 13 20 20 N 1.30680 * 120.00150 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00238 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47031 * 59.99980 * 21 19 17 23 23 H 1.48500 * 109.47465 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47381 * 300.00612 * 21 19 17 25 25 H 1.09006 * 109.46865 * 60.00370 * 1 2 3 26 26 H 1.08996 * 109.46560 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47575 * 299.99889 * 1 2 3 28 28 H 1.08996 * 109.47251 * 240.00503 * 2 1 3 29 29 H 1.08996 * 109.46791 * 119.99695 * 2 1 3 30 30 H 1.08007 * 119.94322 * 359.97181 * 6 5 3 31 31 H 1.07994 * 119.97528 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.02264 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47368 * 59.99008 * 11 10 9 34 34 H 1.09001 * 109.47393 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.46760 * 299.99329 * 11 10 9 36 36 H 1.07999 * 120.03068 * 359.97438 * 12 5 3 37 37 H 1.08997 * 109.46847 * 264.89892 * 14 13 3 38 38 H 1.09003 * 109.47391 * 144.90031 * 14 13 3 39 39 H 1.08996 * 109.47328 * 24.89790 * 14 13 3 40 40 H 0.96995 * 119.99752 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 6 4.3193 0.9135 -0.8890 7 6 5.6973 0.9132 -0.7782 8 6 6.3012 1.4446 0.3451 9 6 5.5237 1.9781 1.3624 10 8 6.1154 2.5018 2.4680 11 6 7.5432 2.4704 2.5162 12 6 4.1410 1.9817 1.2465 13 7 1.6524 2.0976 -1.2518 14 6 2.0024 1.4872 -2.5368 15 6 0.9738 3.2616 -1.2213 16 8 0.6834 3.7688 -0.1539 17 6 0.5862 3.9158 -2.4720 18 1 0.8436 3.4654 -3.4192 19 6 -0.1185 5.1256 -2.4403 20 7 -0.4295 5.6708 -1.2941 21 14 -0.6139 5.9602 -4.0364 22 1 -1.4933 5.0532 -4.8170 23 1 -1.3447 7.2165 -3.7321 24 1 0.6020 6.2738 -4.8291 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8490 0.4975 -1.7679 31 1 6.3022 0.4976 -1.5705 32 1 7.3777 1.4445 0.4310 33 1 7.9476 3.0317 1.6738 34 1 7.8853 2.9189 3.4489 35 1 7.8859 1.4371 2.4623 36 1 3.5336 2.4006 2.0351 37 1 2.9330 1.9205 -2.9033 38 1 1.2060 1.6745 -3.2570 39 1 2.1287 0.4125 -2.4061 40 1 -0.9178 6.5086 -1.2722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291730641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = -46.868609 kcal Electronic energy + Delta-G solvation = -21935.292389 eV Core-core repulsion = 18715.641672 eV Total energy + Delta-G solvation = -3219.650717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04951 -38.53612 -36.83762 -34.79743 -32.44017 -32.01216 -30.91493 -29.85974 -27.44840 -26.72395 -25.94137 -24.65541 -22.17930 -21.68276 -20.68018 -18.91985 -17.33711 -16.62461 -16.02439 -15.89698 -15.64408 -15.38843 -14.73409 -14.59160 -14.12276 -13.65835 -13.50044 -13.21577 -12.76614 -12.54374 -12.38307 -12.13303 -11.95531 -11.63113 -11.44949 -11.30487 -11.17501 -10.98476 -10.94139 -10.73059 -10.62237 -10.46050 -10.24156 -10.16814 -10.11629 -8.82727 -8.55039 -7.94698 -7.54242 -7.19987 -6.16750 -4.62185 1.60187 1.73483 3.16489 3.21619 3.23106 3.37906 3.98826 4.13472 4.57713 4.67166 4.92011 5.01772 5.10196 5.15114 5.29113 5.39446 5.43990 5.58604 5.63212 5.69198 5.81146 5.82644 5.93031 6.05665 6.19340 6.25356 6.33525 6.37183 6.50663 6.54322 6.56984 6.63180 6.70104 6.82587 6.95422 7.11226 7.46336 7.58988 7.65643 8.15973 8.38047 9.04462 9.44933 10.60215 10.79084 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.005147 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.178310 B = 5438.947351 C = 5953.171104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.181 3.819 4 H 0.102 0.898 5 C -0.037 4.037 6 C -0.149 4.149 7 C -0.087 4.087 8 C -0.218 4.218 9 C 0.121 3.879 10 O -0.319 6.319 11 C 0.030 3.970 12 C -0.138 4.138 13 N -0.633 5.633 14 C 0.098 3.902 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.542 4.542 18 H 0.071 0.929 19 C 0.088 3.912 20 N -0.767 5.767 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -10.413 1.351 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.076 3.924 4 H 0.120 0.880 5 C -0.038 4.038 6 C -0.167 4.167 7 C -0.105 4.105 8 C -0.237 4.237 9 C 0.076 3.924 10 O -0.233 6.233 11 C -0.065 4.065 12 C -0.157 4.157 13 N -0.370 5.370 14 C -0.046 4.046 15 C 0.365 3.635 16 O -0.458 6.458 17 C -0.578 4.578 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.395 5.395 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.997 -9.867 2.206 14.939 hybrid contribution 0.263 0.404 -1.066 1.170 sum 11.260 -9.463 1.141 14.752 Atomic orbital electron populations 1.21661 0.95206 1.00224 1.03062 1.21843 0.96689 0.96356 1.01414 1.19651 0.87758 0.93207 0.91787 0.87974 1.20321 0.97155 0.93935 0.92424 1.21194 0.93317 1.02598 0.99586 1.20852 0.94798 0.98208 0.96631 1.21089 0.99314 1.07065 0.96236 1.18979 0.92447 0.94644 0.86310 1.86072 1.21418 1.77114 1.38702 1.22980 0.79089 1.01453 1.03022 1.20382 0.91280 1.04006 1.00055 1.47934 1.60912 1.25414 1.02760 1.21507 0.99963 0.95746 0.87424 1.18235 0.76713 0.77840 0.90687 1.90592 1.58602 1.64199 1.32415 1.20951 1.38074 1.06849 0.91964 0.91100 1.25723 0.94042 0.96679 0.96748 1.70013 1.28545 1.15420 1.25545 0.86475 0.79194 0.78770 0.82568 1.19278 1.20586 1.19317 0.91842 0.93693 0.92800 0.91998 0.92013 0.85413 0.86285 0.86146 0.92877 0.88591 0.92976 0.85264 0.94795 0.91471 0.93444 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.80 37.16 0.36 -2.01 16 2 C -0.12 -1.99 5.08 -26.73 -0.14 -2.12 16 3 C 0.18 3.57 2.34 -69.08 -0.16 3.41 16 4 H 0.10 2.32 6.66 -51.93 -0.35 1.98 16 5 C -0.04 -0.66 4.96 -104.64 -0.52 -1.18 16 6 C -0.15 -2.36 8.33 -39.56 -0.33 -2.69 16 7 C -0.09 -1.22 10.04 -39.60 -0.40 -1.61 16 8 C -0.22 -3.08 9.04 -39.43 -0.36 -3.44 16 9 C 0.12 1.97 6.69 -39.22 -0.26 1.70 16 10 O -0.32 -4.81 10.50 -19.42 -0.20 -5.01 16 11 C 0.03 0.30 9.81 101.05 0.99 1.29 16 12 C -0.14 -2.51 9.61 -39.43 -0.38 -2.89 16 13 N -0.63 -14.11 2.20 -176.92 -0.39 -14.50 16 14 C 0.10 1.78 7.82 59.85 0.47 2.25 16 15 C 0.56 15.76 7.61 -12.99 -0.10 15.66 16 16 O -0.58 -18.45 14.36 5.19 0.07 -18.37 16 17 C -0.54 -15.15 8.73 -35.63 -0.31 -15.46 16 18 H 0.07 1.81 6.11 -52.49 -0.32 1.49 16 19 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 20 N -0.77 -22.99 11.83 55.55 0.66 -22.33 16 21 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H 0.06 1.19 7.75 -51.93 -0.40 0.79 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.90 6.01 -51.93 -0.31 0.59 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.13 1.86 4.90 -52.48 -0.26 1.60 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.36 6.30 -52.49 -0.33 1.02 16 33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.13 2.39 7.95 -52.49 -0.42 1.97 16 37 H 0.03 0.60 7.49 -51.93 -0.39 0.22 16 38 H 0.07 1.26 6.39 -51.93 -0.33 0.93 16 39 H 0.05 0.71 4.98 -51.93 -0.26 0.45 16 40 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -34.29 323.92 -6.64 -40.93 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.41 Total: 4.01 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.22 Total: -4.74 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.27 Total: -36.83 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.13 Total: -23.39 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.29 -6.64 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291730641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.939 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds